Wall clock time and date at job start Mon Mar 30 2020 01:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99572 * 2 1 4 4 H 1.48501 * 109.47057 * 270.00283 * 3 2 1 5 5 H 1.48497 * 109.47290 * 30.00278 * 3 2 1 6 6 H 1.48500 * 109.46989 * 150.00493 * 3 2 1 7 7 C 1.37875 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99773 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99613 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46766 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99910 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47243 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47261 * 64.99825 * 12 11 10 14 14 C 1.34906 * 117.00044 * 180.02562 * 13 12 11 15 15 O 1.21618 * 120.00067 * 359.97438 * 14 13 12 16 16 C 1.46232 * 119.99757 * 179.97438 * 14 13 12 17 17 C 1.34915 * 119.99972 * 179.97438 * 16 14 13 18 18 C 1.47181 * 120.00006 * 179.97438 * 17 16 14 19 19 C 1.39858 * 120.16834 * 180.02562 * 18 17 16 20 20 C 1.37878 * 119.82204 * 179.97438 * 19 18 17 21 21 C 1.38405 * 120.17467 * 359.97438 * 20 19 18 22 22 C 1.38410 * 120.34651 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.17265 * 0.02562 * 22 21 20 24 24 H 0.96996 * 120.00582 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47091 * 60.00952 * 9 7 2 26 26 H 1.09003 * 109.47479 * 299.99921 * 9 7 2 27 27 H 1.09003 * 109.47539 * 59.99890 * 11 10 9 28 28 H 1.09004 * 109.46937 * 299.99894 * 11 10 9 29 29 H 1.08996 * 109.47024 * 304.99673 * 12 11 10 30 30 H 1.08997 * 109.47273 * 184.99761 * 12 11 10 31 31 H 1.08006 * 120.00497 * 0.02562 * 16 14 13 32 32 H 1.07996 * 120.00053 * 0.02562 * 17 16 14 33 33 H 1.08000 * 120.08660 * 359.95655 * 19 18 17 34 34 H 1.07997 * 119.91677 * 180.02562 * 20 19 18 35 35 H 1.07999 * 119.82948 * 179.74233 * 21 20 19 36 36 H 1.08006 * 119.91003 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.08722 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1938 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 2.1799 -3.5852 -0.0005 11 6 1.5654 -4.8753 -0.0011 12 6 2.6485 -5.9561 -0.0004 13 8 3.3870 -5.8896 1.2212 14 6 4.3867 -6.7811 1.3818 15 8 4.6238 -7.5929 0.5078 16 6 5.1852 -6.7714 2.6068 17 6 6.1846 -7.6632 2.7677 18 6 6.9887 -7.6531 4.0004 19 6 8.0259 -8.5757 4.1706 20 6 8.7749 -8.5594 5.3281 21 6 8.5030 -7.6330 6.3197 22 6 7.4782 -6.7167 6.1587 23 6 6.7195 -6.7208 5.0075 24 1 -0.4851 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8897 27 1 0.9455 -4.9822 -0.8913 28 1 0.9450 -4.9826 0.8887 29 1 3.3226 -5.7954 -0.8417 30 1 2.1826 -6.9374 -0.0904 31 1 4.9744 -6.0507 3.3832 32 1 6.3952 -8.3841 1.9916 33 1 8.2393 -9.2991 3.3976 34 1 9.5765 -9.2709 5.4610 35 1 9.0906 -7.6279 7.2259 36 1 7.2719 -5.9971 6.9373 37 1 5.9204 -6.0049 4.8831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815172476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:31 Heat of formation + Delta-G solvation = -116.893761 kcal Electronic energy + Delta-G solvation = -19370.973476 eV Core-core repulsion = 16077.879057 eV Total energy + Delta-G solvation = -3293.094419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57174 -40.10350 -38.80688 -37.60282 -35.20718 -34.95323 -31.98399 -31.81972 -30.63488 -29.03378 -26.01140 -24.56829 -23.86574 -23.42275 -22.49591 -20.48623 -19.18558 -18.69329 -17.97810 -17.83700 -17.46836 -17.04059 -16.40987 -16.27037 -16.12822 -15.67431 -15.22808 -14.57540 -14.46342 -14.29202 -14.25668 -13.92463 -13.75100 -13.30475 -13.10600 -12.93403 -12.70959 -12.45106 -12.21116 -12.03735 -11.86194 -11.71546 -11.65241 -11.46659 -11.28953 -10.90605 -10.28583 -9.90443 -9.33785 -8.33108 -6.45481 -0.64075 0.47481 0.81672 1.40010 1.42826 1.55038 1.70662 1.92529 2.34147 2.92869 3.00677 3.04987 3.52849 3.77921 3.92297 3.96940 4.07314 4.09309 4.17168 4.32188 4.40165 4.48371 4.49360 4.52788 4.64001 4.84168 4.93540 4.95031 5.13620 5.15935 5.19228 5.36991 5.52439 5.53406 5.57350 5.61293 5.94011 6.02143 6.48501 6.67442 6.78519 7.26113 8.79152 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.002897 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.772271 B = 9661.879202 C =10886.676078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.207 3.793 10 O -0.410 6.410 11 C 0.054 3.946 12 C 0.076 3.924 13 O -0.351 6.351 14 C 0.494 3.506 15 O -0.544 6.544 16 C -0.210 4.210 17 C 0.013 3.987 18 C -0.102 4.102 19 C -0.096 4.096 20 C -0.130 4.130 21 C -0.105 4.105 22 C -0.134 4.134 23 C -0.110 4.110 24 H 0.272 0.728 25 H -0.007 1.007 26 H -0.010 1.010 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.527 -18.036 12.095 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.023 4.023 12 C 0.002 3.998 13 O -0.267 6.267 14 C 0.344 3.656 15 O -0.437 6.437 16 C -0.228 4.228 17 C -0.005 4.005 18 C -0.102 4.102 19 C -0.114 4.114 20 C -0.148 4.148 21 C -0.123 4.123 22 C -0.151 4.151 23 C -0.127 4.127 24 H 0.080 0.920 25 H 0.010 0.990 26 H 0.008 0.992 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.171 0.829 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.589 -18.111 11.821 26.660 hybrid contribution -0.534 0.768 -0.418 1.025 sum 15.055 -17.343 11.402 25.640 Atomic orbital electron populations 1.70055 1.07682 1.28731 1.50362 1.25954 0.96001 1.03348 0.93847 0.85180 0.78365 0.76989 0.78864 1.19271 1.19728 1.18965 1.21381 0.94067 0.90940 1.52472 0.92235 1.19885 0.88572 0.84373 0.93917 1.87864 1.35582 1.14222 1.95334 1.22656 0.94441 0.83288 1.01877 1.22813 0.93293 0.99178 0.84490 1.86277 1.44108 1.54785 1.41524 1.21742 0.78590 0.77341 0.87970 1.90817 1.68999 1.39214 1.44700 1.22223 0.99125 1.05212 0.96284 1.22572 0.89364 0.93618 0.94946 1.19053 0.98170 0.98986 0.94040 1.21680 0.93689 0.97381 0.98650 1.21472 1.00310 0.99650 0.93375 1.21750 0.96716 0.94087 0.99774 1.21442 0.95986 0.99921 0.97792 1.21742 0.99689 0.97714 0.93594 0.91951 0.98951 0.99231 0.89945 0.92510 0.91361 0.87596 0.82920 0.84108 0.83770 0.83135 0.83364 0.83929 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.55 -33.42 9.43 25.60 0.24 -33.18 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.82 5.69 71.24 0.41 12.22 16 10 O -0.41 -20.73 10.29 -144.35 -1.49 -22.22 16 11 C 0.05 2.04 6.32 71.98 0.45 2.50 16 12 C 0.08 2.52 5.76 71.98 0.41 2.93 16 13 O -0.35 -12.42 10.09 -55.23 -0.56 -12.98 16 14 C 0.49 15.63 7.87 69.90 0.55 16.18 16 15 O -0.54 -18.75 16.00 19.45 0.31 -18.44 16 16 C -0.21 -5.14 9.54 23.58 0.22 -4.92 16 17 C 0.01 0.27 9.46 23.86 0.23 0.50 16 18 C -0.10 -1.82 5.87 -20.15 -0.12 -1.94 16 19 C -0.10 -1.34 9.80 22.58 0.22 -1.12 16 20 C -0.13 -1.46 10.03 22.22 0.22 -1.24 16 21 C -0.11 -1.19 10.04 22.35 0.22 -0.96 16 22 C -0.13 -1.84 10.03 22.23 0.22 -1.61 16 23 C -0.11 -1.87 9.41 22.57 0.21 -1.66 16 24 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 27 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.07 2.33 8.13 -2.39 -0.02 2.31 16 30 H 0.11 2.83 8.13 -2.39 -0.02 2.81 16 31 H 0.15 3.33 6.08 -2.91 -0.02 3.31 16 32 H 0.14 2.73 7.52 -2.91 -0.02 2.71 16 33 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 35 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 36 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 37 H 0.13 2.14 6.17 -2.91 -0.02 2.13 16 Total: -1.00 -73.19 332.17 5.60 -67.59 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.06 Total: 6.44 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 3.96 Total: -11.42 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.28 Total: -55.72 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -1.73 Total: -53.64 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -73.19 5.60 -67.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.306 kcal (2) G-P(sol) polarization free energy of solvation -73.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds