Wall clock time and date at job start Mon Mar 30 2020 01:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48495 * 109.47431 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47327 * 300.00170 * 3 2 1 6 6 H 1.48504 * 109.46934 * 60.00111 * 3 2 1 7 7 C 1.37882 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46909 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99933 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47069 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47433 * 65.00379 * 12 11 10 14 14 C 1.34905 * 117.00415 * 179.97438 * 13 12 11 15 15 O 1.21616 * 119.99915 * 0.02562 * 14 13 12 16 16 C 1.46232 * 119.99977 * 179.97438 * 14 13 12 17 17 C 1.34919 * 119.99892 * 173.22646 * 16 14 13 18 18 C 1.47167 * 119.99859 * 348.84803 * 17 16 14 19 19 C 1.39851 * 120.17674 * 316.34675 * 18 17 16 20 20 C 1.37885 * 119.82986 * 179.74514 * 19 18 17 21 21 C 1.38413 * 120.16667 * 0.53153 * 20 19 18 22 22 C 1.38399 * 120.34838 * 359.74442 * 21 20 19 23 23 C 1.37888 * 120.17409 * 359.97386 * 22 21 20 24 24 H 0.96997 * 120.00013 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46801 * 60.00810 * 9 7 2 26 26 H 1.08997 * 109.46892 * 300.00218 * 9 7 2 27 27 H 1.09000 * 109.46359 * 60.00370 * 11 10 9 28 28 H 1.09000 * 109.47019 * 300.00575 * 11 10 9 29 29 H 1.08999 * 109.47496 * 305.00180 * 12 11 10 30 30 H 1.09001 * 109.46863 * 185.00373 * 12 11 10 31 31 H 1.07998 * 120.00104 * 352.95980 * 16 14 13 32 32 H 1.08001 * 119.99602 * 168.84931 * 17 16 14 33 33 H 1.08009 * 120.08433 * 0.02562 * 19 18 17 34 34 H 1.08003 * 119.91808 * 180.29174 * 20 19 18 35 35 H 1.08000 * 119.81903 * 179.76035 * 21 20 19 36 36 H 1.08000 * 119.91220 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.08368 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5650 -4.8755 -0.0013 12 6 2.6479 -5.9562 -0.0020 13 8 3.3882 -5.8897 1.2186 14 6 4.3873 -6.7819 1.3783 15 8 4.6232 -7.5937 0.5041 16 6 5.1875 -6.7722 2.6023 17 6 6.0942 -7.7466 2.8232 18 6 6.1114 -8.9435 1.9672 19 6 4.9135 -9.5751 1.6178 20 6 4.9376 -10.6931 0.8110 21 6 6.1439 -11.1969 0.3563 22 6 7.3340 -10.5809 0.7025 23 6 7.3261 -9.4587 1.5037 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 0.9440 -4.9823 -0.8906 28 1 0.9458 -4.9826 0.8894 29 1 3.3209 -5.7957 -0.8442 30 1 2.1818 -6.9375 -0.0913 31 1 5.0557 -5.9827 3.3273 32 1 6.8073 -7.6480 3.6283 33 1 3.9717 -9.1855 1.9752 34 1 4.0131 -11.1792 0.5364 35 1 6.1565 -12.0751 -0.2721 36 1 8.2712 -10.9797 0.3434 37 1 8.2556 -8.9790 1.7726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815172479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:33 Heat of formation + Delta-G solvation = -83.363297 kcal Electronic energy + Delta-G solvation = -20027.973658 eV Core-core repulsion = 16736.333229 eV Total energy + Delta-G solvation = -3291.640429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56294 -39.07113 -37.12011 -36.09847 -34.07692 -32.76672 -31.03912 -30.46866 -29.55006 -26.95757 -24.84988 -22.73804 -22.51847 -22.28335 -21.55811 -19.60996 -18.01045 -17.06422 -16.53245 -16.40900 -15.97591 -15.33491 -15.14514 -14.96389 -14.49554 -14.29632 -14.12796 -13.57714 -13.54377 -13.04814 -12.89723 -12.73955 -12.31897 -11.92050 -11.43247 -11.36583 -11.27856 -10.88403 -10.87040 -10.71830 -10.42342 -10.29796 -10.08163 -10.02651 -9.11171 -8.93910 -8.87777 -8.35419 -8.21059 -6.12057 -4.13547 0.44513 1.35489 1.64558 2.89857 3.02284 3.29068 3.35447 3.42344 3.73699 4.32961 4.47301 4.68341 4.75308 4.82614 4.90432 4.96557 5.19446 5.24626 5.26168 5.30589 5.43581 5.49435 5.72667 5.76011 5.88168 5.91345 5.93707 6.02784 6.13891 6.34718 6.39551 6.44713 6.65750 6.87359 7.05816 7.40053 7.78581 7.93626 8.12802 8.53043 8.99601 9.51276 10.99624 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.002884 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.728984 B = 9706.996628 C =10112.967980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.074 3.926 13 O -0.333 6.333 14 C 0.484 3.516 15 O -0.501 6.501 16 C -0.181 4.181 17 C -0.020 4.020 18 C -0.079 4.079 19 C -0.043 4.043 20 C -0.131 4.131 21 C -0.108 4.108 22 C -0.134 4.134 23 C -0.097 4.097 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.096 -21.347 5.109 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.015 4.015 12 C 0.000 4.000 13 O -0.248 6.248 14 C 0.330 3.670 15 O -0.392 6.392 16 C -0.200 4.200 17 C -0.038 4.038 18 C -0.079 4.079 19 C -0.062 4.062 20 C -0.149 4.149 21 C -0.126 4.126 22 C -0.152 4.152 23 C -0.115 4.115 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.166 -21.402 4.819 24.616 hybrid contribution -0.108 0.961 -0.236 0.996 sum 11.058 -20.440 4.583 23.688 Atomic orbital electron populations 1.69968 1.06110 1.27089 1.50662 1.24956 0.94993 0.99474 0.95130 0.86271 0.80047 0.82509 0.77625 1.19450 1.20831 1.20807 1.21096 0.94147 0.89289 1.50676 0.91451 1.20243 0.88762 0.83536 0.95495 1.87920 1.35311 1.12620 1.95217 1.22321 0.93267 0.85471 1.00477 1.22790 0.93733 0.98568 0.84909 1.86298 1.43170 1.54184 1.41183 1.21451 0.79032 0.78294 0.88211 1.90936 1.67504 1.37060 1.43715 1.22411 0.98202 1.02654 0.96714 1.22525 0.94132 0.90875 0.96289 1.18936 0.93833 0.95442 0.99656 1.21086 0.96489 0.93457 0.95131 1.20962 0.97946 0.97065 0.98901 1.21199 0.92641 0.99644 0.99161 1.20963 0.98065 0.96648 0.99545 1.21180 0.96702 0.95880 0.97777 0.92685 0.97622 0.97486 0.92070 0.93259 0.90819 0.90849 0.83330 0.83680 0.86965 0.86255 0.86379 0.86202 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -15.32 9.43 -34.44 -0.32 -15.64 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.37 5.69 36.01 0.20 5.57 16 10 O -0.39 -9.66 10.29 -40.08 -0.41 -10.08 16 11 C 0.06 1.17 6.32 37.15 0.23 1.40 16 12 C 0.07 1.22 5.76 37.15 0.21 1.43 16 13 O -0.33 -5.69 10.09 -44.17 -0.45 -6.14 16 14 C 0.48 7.27 6.91 33.94 0.23 7.50 16 15 O -0.50 -8.15 11.94 -19.35 -0.23 -8.38 16 16 C -0.18 -2.05 10.03 -37.55 -0.38 -2.43 16 17 C -0.02 -0.19 9.81 -37.14 -0.36 -0.55 16 18 C -0.08 -0.88 4.53 -105.07 -0.48 -1.36 16 19 C -0.04 -0.52 6.61 -39.11 -0.26 -0.78 16 20 C -0.13 -1.42 10.03 -39.65 -0.40 -1.82 16 21 C -0.11 -1.07 10.04 -39.46 -0.40 -1.46 16 22 C -0.13 -1.29 10.03 -39.65 -0.40 -1.69 16 23 C -0.10 -0.98 9.80 -39.11 -0.38 -1.37 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 30 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.11 1.33 7.02 -52.48 -0.37 0.96 16 34 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 327.23 15.07 4.93 4.93 Total: -1.00 -34.07 327.23 -8.01 -42.09 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -4.99 Total: -3.44 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.58 Total: -9.67 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.09 Total: -24.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.07 -8.01 -42.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.278 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds