Wall clock time and date at job start Mon Mar 30 2020 01:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48495 * 109.47431 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47327 * 300.00170 * 3 2 1 6 6 H 1.48504 * 109.46934 * 60.00111 * 3 2 1 7 7 C 1.37882 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46909 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99933 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47069 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47433 * 65.00379 * 12 11 10 14 14 C 1.34905 * 117.00415 * 179.97438 * 13 12 11 15 15 O 1.21616 * 119.99915 * 0.02562 * 14 13 12 16 16 C 1.46232 * 119.99977 * 179.97438 * 14 13 12 17 17 C 1.34919 * 119.99892 * 173.22646 * 16 14 13 18 18 C 1.47167 * 119.99859 * 348.84803 * 17 16 14 19 19 C 1.39851 * 120.17674 * 316.34675 * 18 17 16 20 20 C 1.37885 * 119.82986 * 179.74514 * 19 18 17 21 21 C 1.38413 * 120.16667 * 0.53153 * 20 19 18 22 22 C 1.38399 * 120.34838 * 359.74442 * 21 20 19 23 23 C 1.37888 * 120.17409 * 359.97386 * 22 21 20 24 24 H 0.96997 * 120.00013 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46801 * 60.00810 * 9 7 2 26 26 H 1.08997 * 109.46892 * 300.00218 * 9 7 2 27 27 H 1.09000 * 109.46359 * 60.00370 * 11 10 9 28 28 H 1.09000 * 109.47019 * 300.00575 * 11 10 9 29 29 H 1.08999 * 109.47496 * 305.00180 * 12 11 10 30 30 H 1.09001 * 109.46863 * 185.00373 * 12 11 10 31 31 H 1.07998 * 120.00104 * 352.95980 * 16 14 13 32 32 H 1.08001 * 119.99602 * 168.84931 * 17 16 14 33 33 H 1.08009 * 120.08433 * 0.02562 * 19 18 17 34 34 H 1.08003 * 119.91808 * 180.29174 * 20 19 18 35 35 H 1.08000 * 119.81903 * 179.76035 * 21 20 19 36 36 H 1.08000 * 119.91220 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.08368 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5650 -4.8755 -0.0013 12 6 2.6479 -5.9562 -0.0020 13 8 3.3882 -5.8897 1.2186 14 6 4.3873 -6.7819 1.3783 15 8 4.6232 -7.5937 0.5041 16 6 5.1875 -6.7722 2.6023 17 6 6.0942 -7.7466 2.8232 18 6 6.1114 -8.9435 1.9672 19 6 4.9135 -9.5751 1.6178 20 6 4.9376 -10.6931 0.8110 21 6 6.1439 -11.1969 0.3563 22 6 7.3340 -10.5809 0.7025 23 6 7.3261 -9.4587 1.5037 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 0.9440 -4.9823 -0.8906 28 1 0.9458 -4.9826 0.8894 29 1 3.3209 -5.7957 -0.8442 30 1 2.1818 -6.9375 -0.0913 31 1 5.0557 -5.9827 3.3273 32 1 6.8073 -7.6480 3.6283 33 1 3.9717 -9.1855 1.9752 34 1 4.0131 -11.1792 0.5364 35 1 6.1565 -12.0751 -0.2721 36 1 8.2712 -10.9797 0.3434 37 1 8.2556 -8.9790 1.7726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815172479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:33 Heat of formation + Delta-G solvation = -103.099401 kcal Electronic energy + Delta-G solvation = -20028.829480 eV Core-core repulsion = 16736.333229 eV Total energy + Delta-G solvation = -3292.496251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.68209 -39.95197 -38.73921 -37.51639 -34.96254 -34.93427 -31.85475 -31.79500 -30.58197 -29.04057 -25.87844 -24.56667 -23.72857 -23.35120 -22.71790 -20.57903 -19.04640 -18.70310 -18.09022 -17.81947 -17.15958 -16.82474 -16.46879 -16.21325 -15.96343 -15.68950 -15.21977 -14.77213 -14.47126 -14.31708 -14.07303 -13.82406 -13.68212 -13.33397 -13.15862 -12.90011 -12.72721 -12.45684 -12.16328 -12.03621 -11.96886 -11.63990 -11.45026 -11.27918 -10.92180 -10.91393 -10.29675 -9.72766 -9.18324 -8.33814 -6.46159 -0.40740 0.56492 0.82069 1.39922 1.41355 1.56239 1.80197 1.98421 2.33919 2.95461 3.00060 3.04517 3.69039 3.80768 3.93050 4.02917 4.08658 4.10851 4.26647 4.38961 4.45961 4.48514 4.57791 4.62881 4.69394 4.83174 4.97435 5.02189 5.15161 5.16504 5.25054 5.46475 5.53170 5.57794 5.63539 5.66854 5.93336 6.12596 6.47935 6.76345 6.80106 7.25556 8.78761 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.002884 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.728984 B = 9706.996628 C =10112.967980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.207 3.793 10 O -0.410 6.410 11 C 0.054 3.946 12 C 0.081 3.919 13 O -0.355 6.355 14 C 0.479 3.521 15 O -0.520 6.520 16 C -0.208 4.208 17 C 0.010 3.990 18 C -0.103 4.103 19 C -0.064 4.064 20 C -0.147 4.147 21 C -0.115 4.115 22 C -0.141 4.141 23 C -0.103 4.103 24 H 0.272 0.728 25 H -0.008 1.008 26 H -0.010 1.010 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.188 0.812 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.951 -21.533 5.541 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.022 4.022 12 C 0.006 3.994 13 O -0.271 6.271 14 C 0.327 3.673 15 O -0.412 6.412 16 C -0.227 4.227 17 C -0.007 4.007 18 C -0.103 4.103 19 C -0.082 4.082 20 C -0.165 4.165 21 C -0.133 4.133 22 C -0.158 4.158 23 C -0.121 4.121 24 H 0.081 0.919 25 H 0.010 0.990 26 H 0.008 0.992 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.183 0.817 32 H 0.205 0.795 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.017 -21.616 5.254 25.774 hybrid contribution -0.667 0.826 -0.384 1.129 sum 12.350 -20.790 4.870 24.667 Atomic orbital electron populations 1.70063 1.07702 1.28685 1.50417 1.25964 0.96005 1.03380 0.93830 0.85121 0.78594 0.77218 0.78381 1.18956 1.19549 1.19470 1.21412 0.94066 0.90914 1.52401 0.92231 1.19886 0.88577 0.84407 0.93874 1.87865 1.35579 1.14221 1.95320 1.22643 0.94514 0.83371 1.01699 1.22694 0.93116 0.98824 0.84724 1.86291 1.44181 1.55422 1.41245 1.22135 0.78492 0.77400 0.89273 1.90921 1.67986 1.37621 1.44690 1.22503 0.99187 1.04688 0.96276 1.22975 0.92989 0.88923 0.95856 1.19254 0.94134 0.96312 1.00619 1.21174 0.96583 0.94376 0.96077 1.21214 0.99059 0.97198 0.99065 1.21539 0.92398 1.00283 0.99040 1.21358 0.99043 0.96412 0.99023 1.21538 0.97162 0.95983 0.97381 0.91943 0.99043 0.99231 0.90228 0.92583 0.91788 0.87964 0.81746 0.79521 0.88035 0.85392 0.84222 0.83707 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 2 C 0.01 0.39 5.46 84.66 0.46 0.86 16 3 Si 0.98 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -33.41 9.43 25.60 0.24 -33.17 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.85 5.69 71.24 0.41 12.25 16 10 O -0.41 -20.79 10.29 -144.35 -1.49 -22.28 16 11 C 0.05 2.07 6.32 71.98 0.45 2.52 16 12 C 0.08 2.66 5.76 71.98 0.41 3.07 16 13 O -0.35 -12.34 10.09 -55.22 -0.56 -12.90 16 14 C 0.48 14.48 6.91 69.90 0.48 14.97 16 15 O -0.52 -17.05 11.94 19.46 0.23 -16.81 16 16 C -0.21 -4.55 10.03 23.59 0.24 -4.31 16 17 C 0.01 0.18 9.81 23.85 0.23 0.41 16 18 C -0.10 -2.18 4.53 -20.15 -0.09 -2.27 16 19 C -0.06 -1.51 6.61 22.58 0.15 -1.36 16 20 C -0.15 -3.14 10.03 22.23 0.22 -2.92 16 21 C -0.11 -2.09 10.04 22.35 0.22 -1.86 16 22 C -0.14 -2.39 10.03 22.23 0.22 -2.16 16 23 C -0.10 -1.85 9.80 22.58 0.22 -1.62 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 30 H 0.10 2.75 8.13 -2.39 -0.02 2.73 16 31 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.10 2.50 7.02 -2.91 -0.02 2.48 16 34 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -74.22 327.23 5.43 -68.78 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.05 Total: 7.83 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.88 Total: -15.61 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.28 Total: -55.75 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -1.81 Total: -51.99 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -74.22 5.43 -68.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.316 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds