Wall clock time and date at job start Mon Mar 30 2020 01:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32694 * 1 3 3 C 1.47659 * 119.99995 * 2 1 4 4 C 1.39725 * 119.98799 * 359.72728 * 3 2 1 5 5 C 1.37113 * 120.00321 * 179.76139 * 4 3 2 6 6 C 1.39796 * 119.99313 * 0.53526 * 5 4 3 7 7 C 1.47548 * 120.01187 * 179.69818 * 6 5 4 8 8 O 1.21494 * 120.00327 * 180.02562 * 7 6 5 9 9 O 1.34741 * 119.99920 * 0.02562 * 7 6 5 10 10 C 1.45198 * 117.00265 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47500 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47141 * 65.00216 * 11 10 9 13 13 C 1.42903 * 114.00341 * 180.02562 * 12 11 10 14 14 C 1.50690 * 109.47152 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00172 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00084 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99770 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00273 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47121 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47350 * 119.99861 * 18 16 14 21 21 H 1.48503 * 109.47166 * 239.99534 * 18 16 14 22 22 C 1.39802 * 119.97943 * 359.71620 * 6 5 4 23 23 C 1.37104 * 119.99504 * 359.97438 * 22 6 5 24 24 H 1.07997 * 120.00245 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99693 * 179.72744 * 1 2 3 26 26 H 1.08000 * 119.99518 * 180.02562 * 2 1 3 27 27 H 1.08001 * 119.99610 * 359.97438 * 4 3 2 28 28 H 1.07999 * 120.00216 * 180.23018 * 5 4 3 29 29 H 1.09003 * 109.47350 * 300.00185 * 10 9 7 30 30 H 1.09007 * 109.46918 * 60.00033 * 10 9 7 31 31 H 1.08996 * 109.47448 * 185.00007 * 11 10 9 32 32 H 1.09000 * 109.47184 * 305.00059 * 11 10 9 33 33 H 1.09004 * 109.46550 * 299.99816 * 13 12 11 34 34 H 1.09001 * 109.46679 * 59.99741 * 13 12 11 35 35 H 0.97006 * 120.00405 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.00228 * 179.97438 * 22 6 5 37 37 H 1.07998 * 120.00118 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 1.3664 2.4887 -0.0058 5 6 2.0516 3.6763 -0.0008 6 6 3.4495 3.6765 -0.0013 7 6 4.1873 4.9543 -0.0027 8 8 5.4023 4.9543 -0.0036 9 8 3.5136 6.1212 -0.0030 10 6 4.3044 7.3390 -0.0038 11 6 3.3724 8.5524 -0.0047 12 8 2.6308 8.5842 1.2163 13 6 1.7248 9.6847 1.3176 14 6 0.9997 9.6186 2.6370 15 1 1.2095 8.8162 3.3289 16 6 0.0678 10.5818 2.9606 17 7 -0.1879 11.5586 2.1179 18 14 -0.8304 10.5003 4.5964 19 1 -0.3649 9.3136 5.3581 20 1 -0.5495 11.7318 5.3773 21 1 -2.2914 10.3905 4.3539 22 6 4.1483 2.4657 -0.0009 23 6 3.4625 1.2785 0.0006 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9354 -0.0044 26 1 1.8669 -0.9354 -0.0004 27 1 0.2864 2.4884 -0.0106 28 1 1.5114 4.6114 -0.0015 29 1 4.9336 7.3643 0.8859 30 1 4.9329 7.3634 -0.8941 31 1 3.9630 9.4641 -0.0949 32 1 2.6837 8.4809 -0.8465 33 1 2.2809 10.6200 1.2547 34 1 1.0018 9.6362 0.5033 35 1 -0.8438 12.2361 2.3453 36 1 5.2283 2.4654 -0.0017 37 1 4.0022 0.3431 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815239451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:26 Heat of formation + Delta-G solvation = -93.188205 kcal Electronic energy + Delta-G solvation = -19845.950166 eV Core-core repulsion = 16553.883696 eV Total energy + Delta-G solvation = -3292.066469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.50477 -39.10910 -37.03652 -35.98888 -34.49664 -32.78173 -31.46987 -30.43614 -29.57426 -26.95182 -24.91039 -22.86098 -22.56000 -22.21532 -21.19880 -19.92107 -18.08766 -17.20536 -16.47735 -16.45062 -16.04284 -15.33366 -15.21932 -14.85004 -14.62763 -14.35343 -13.98811 -13.55661 -13.47424 -13.35876 -12.78747 -12.66287 -12.39728 -11.96749 -11.60456 -11.43983 -11.11523 -10.92994 -10.88471 -10.75276 -10.67491 -10.43400 -10.36262 -10.05176 -9.26764 -9.12333 -8.89061 -8.55854 -8.22459 -6.13003 -4.14591 0.24001 1.20359 1.89497 2.72813 2.77771 3.28331 3.34888 3.41681 3.71793 4.31866 4.36302 4.50347 4.68200 4.70785 4.77474 4.90397 5.11807 5.18489 5.23377 5.23759 5.40226 5.46366 5.59482 5.77306 5.85665 5.88963 5.96099 5.99421 6.08976 6.17377 6.24075 6.44637 6.56968 6.63148 7.04442 7.38710 7.77478 7.84577 8.11581 8.51480 8.98537 9.50352 10.98597 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.003587 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.100882 B = 7805.159815 C = 9201.318571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.127 4.127 3 C -0.028 4.028 4 C -0.130 4.130 5 C -0.053 4.053 6 C -0.125 4.125 7 C 0.507 3.493 8 O -0.515 6.515 9 O -0.336 6.336 10 C 0.075 3.925 11 C 0.062 3.938 12 O -0.391 6.391 13 C 0.194 3.806 14 C -0.514 4.514 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.054 4.054 23 C -0.126 4.126 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.134 0.866 28 H 0.146 0.854 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.138 0.862 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 -20.653 -7.247 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.028 4.028 4 C -0.148 4.148 5 C -0.071 4.071 6 C -0.126 4.126 7 C 0.352 3.648 8 O -0.406 6.406 9 O -0.252 6.252 10 C 0.002 3.998 11 C -0.016 4.016 12 O -0.311 6.311 13 C 0.120 3.880 14 C -0.552 4.552 15 H 0.086 0.914 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.072 4.072 23 C -0.144 4.144 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.139 0.861 27 H 0.152 0.848 28 H 0.164 0.836 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.156 0.844 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.825 -20.566 -7.117 22.291 hybrid contribution -0.410 0.445 0.574 0.834 sum 4.414 -20.121 -6.543 21.614 Atomic orbital electron populations 1.24535 0.95708 1.02676 0.97438 1.21839 0.95305 0.95673 1.01713 1.19411 0.93449 0.93389 0.96536 1.21215 1.00545 0.91353 1.01645 1.21443 0.92890 0.99510 0.93234 1.19251 0.93824 0.90635 1.08862 1.21141 0.86013 0.84914 0.72722 1.90804 1.14799 1.88414 1.46600 1.86639 1.40990 1.14414 1.83132 1.23243 0.93458 0.80480 1.02654 1.22327 0.94632 0.94149 0.90502 1.87922 1.56745 1.51577 1.34822 1.20242 0.86883 0.83338 0.97553 1.21091 1.21258 1.10873 1.02025 0.91445 1.24948 0.96729 0.94974 0.97854 1.69970 1.34232 1.13668 1.35928 0.86280 0.79202 0.78139 0.82886 1.19450 1.20822 1.20808 1.21070 1.00810 0.90556 0.94796 1.21045 0.93172 0.98034 1.02125 0.87635 0.87523 0.86132 0.84792 0.83629 0.90378 0.90330 0.91862 0.93162 0.97600 0.97492 0.92682 0.84422 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 14.15 28.84 0.41 -0.69 16 2 C -0.13 -0.95 9.90 -37.62 -0.37 -1.33 16 3 C -0.03 -0.27 5.87 -104.94 -0.62 -0.88 16 4 C -0.13 -1.36 9.36 -39.43 -0.37 -1.73 16 5 C -0.05 -0.66 9.58 -39.41 -0.38 -1.03 16 6 C -0.12 -1.69 5.88 -104.93 -0.62 -2.31 16 7 C 0.51 8.15 7.89 34.53 0.27 8.43 16 8 O -0.52 -9.03 16.12 -19.26 -0.31 -9.34 16 9 O -0.34 -5.79 9.43 -43.38 -0.41 -6.20 16 10 C 0.08 1.22 5.85 37.16 0.22 1.44 16 11 C 0.06 1.13 6.33 37.16 0.24 1.36 16 12 O -0.39 -9.49 10.30 -38.79 -0.40 -9.89 16 13 C 0.19 5.30 5.69 36.00 0.20 5.51 16 14 C -0.51 -15.18 9.43 -34.45 -0.32 -15.51 16 15 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 18 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.05 -0.62 9.56 -39.41 -0.38 -1.00 16 23 C -0.13 -1.19 9.74 -39.44 -0.38 -1.57 16 24 H 0.11 0.68 6.02 -52.49 -0.32 0.36 16 25 H 0.11 0.52 8.06 -52.48 -0.42 0.09 16 26 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 27 H 0.13 1.14 6.14 -52.49 -0.32 0.81 16 28 H 0.15 1.87 7.60 -52.49 -0.40 1.47 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.14 1.47 7.64 -52.49 -0.40 1.07 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -33.33 331.22 -7.40 -40.73 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -4.79 Total: -3.25 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.20 Total: -7.79 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -1.12 Total: -25.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.33 -7.40 -40.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815239451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.460 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds