Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32694 * 1 3 3 C 1.47659 * 119.99995 * 2 1 4 4 C 1.39725 * 119.98799 * 359.72728 * 3 2 1 5 5 C 1.37113 * 120.00321 * 179.76139 * 4 3 2 6 6 C 1.39796 * 119.99313 * 0.53526 * 5 4 3 7 7 C 1.47548 * 120.01187 * 179.69818 * 6 5 4 8 8 O 1.21494 * 120.00327 * 180.02562 * 7 6 5 9 9 O 1.34741 * 119.99920 * 0.02562 * 7 6 5 10 10 C 1.45198 * 117.00265 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47500 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47141 * 65.00216 * 11 10 9 13 13 C 1.42903 * 114.00341 * 180.02562 * 12 11 10 14 14 C 1.50690 * 109.47152 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00172 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00084 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99770 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00273 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47121 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47350 * 119.99861 * 18 16 14 21 21 H 1.48503 * 109.47166 * 239.99534 * 18 16 14 22 22 C 1.39802 * 119.97943 * 359.71620 * 6 5 4 23 23 C 1.37104 * 119.99504 * 359.97438 * 22 6 5 24 24 H 1.07997 * 120.00245 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99693 * 179.72744 * 1 2 3 26 26 H 1.08000 * 119.99518 * 180.02562 * 2 1 3 27 27 H 1.08001 * 119.99610 * 359.97438 * 4 3 2 28 28 H 1.07999 * 120.00216 * 180.23018 * 5 4 3 29 29 H 1.09003 * 109.47350 * 300.00185 * 10 9 7 30 30 H 1.09007 * 109.46918 * 60.00033 * 10 9 7 31 31 H 1.08996 * 109.47448 * 185.00007 * 11 10 9 32 32 H 1.09000 * 109.47184 * 305.00059 * 11 10 9 33 33 H 1.09004 * 109.46550 * 299.99816 * 13 12 11 34 34 H 1.09001 * 109.46679 * 59.99741 * 13 12 11 35 35 H 0.97006 * 120.00405 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.00228 * 179.97438 * 22 6 5 37 37 H 1.07998 * 120.00118 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 1.3664 2.4887 -0.0058 5 6 2.0516 3.6763 -0.0008 6 6 3.4495 3.6765 -0.0013 7 6 4.1873 4.9543 -0.0027 8 8 5.4023 4.9543 -0.0036 9 8 3.5136 6.1212 -0.0030 10 6 4.3044 7.3390 -0.0038 11 6 3.3724 8.5524 -0.0047 12 8 2.6308 8.5842 1.2163 13 6 1.7248 9.6847 1.3176 14 6 0.9997 9.6186 2.6370 15 1 1.2095 8.8162 3.3289 16 6 0.0678 10.5818 2.9606 17 7 -0.1879 11.5586 2.1179 18 14 -0.8304 10.5003 4.5964 19 1 -0.3649 9.3136 5.3581 20 1 -0.5495 11.7318 5.3773 21 1 -2.2914 10.3905 4.3539 22 6 4.1483 2.4657 -0.0009 23 6 3.4625 1.2785 0.0006 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9354 -0.0044 26 1 1.8669 -0.9354 -0.0004 27 1 0.2864 2.4884 -0.0106 28 1 1.5114 4.6114 -0.0015 29 1 4.9336 7.3643 0.8859 30 1 4.9329 7.3634 -0.8941 31 1 3.9630 9.4641 -0.0949 32 1 2.6837 8.4809 -0.8465 33 1 2.2809 10.6200 1.2547 34 1 1.0018 9.6362 0.5033 35 1 -0.8438 12.2361 2.3453 36 1 5.2283 2.4654 -0.0017 37 1 4.0022 0.3431 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815239451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = -112.206080 kcal Electronic energy + Delta-G solvation = -19846.774842 eV Core-core repulsion = 16553.883696 eV Total energy + Delta-G solvation = -3292.891146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68023 -40.04893 -38.73661 -37.44781 -35.21092 -34.95512 -32.37431 -31.72861 -30.60983 -29.02351 -25.89255 -24.57107 -23.71667 -23.65080 -22.32546 -20.63699 -19.19970 -18.73045 -18.24268 -17.93999 -17.08592 -16.95918 -16.42845 -16.25987 -15.95195 -15.73872 -15.23379 -14.70806 -14.52566 -14.31921 -14.10837 -13.86847 -13.68782 -13.30563 -13.17920 -12.91727 -12.73287 -12.49126 -12.28017 -12.03607 -11.84944 -11.78354 -11.63886 -11.39107 -11.28032 -10.91560 -10.29106 -10.11172 -9.29716 -8.33604 -6.45790 -0.63534 0.36761 1.06517 1.39838 1.41005 1.55867 1.56945 1.81702 2.33797 2.86102 3.00340 3.03878 3.51125 3.74803 3.80089 3.89332 3.92346 4.07632 4.26442 4.30302 4.37805 4.41937 4.49665 4.62374 4.73193 4.83728 4.90954 5.00290 5.14982 5.18265 5.24944 5.29159 5.36754 5.53312 5.62943 5.77297 5.87435 5.93755 6.47869 6.60459 6.78213 7.25939 8.78843 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.003587 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.100882 B = 7805.159815 C = 9201.318571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.144 4.144 3 C -0.020 4.020 4 C -0.138 4.138 5 C -0.064 4.064 6 C -0.154 4.154 7 C 0.506 3.494 8 O -0.537 6.537 9 O -0.353 6.353 10 C 0.078 3.922 11 C 0.054 3.946 12 O -0.410 6.410 13 C 0.208 3.792 14 C -0.550 4.550 15 H 0.059 0.941 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.983 3.017 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.269 1.269 22 C -0.056 4.056 23 C -0.122 4.122 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.143 0.857 27 H 0.152 0.848 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.057 0.943 33 H -0.007 1.007 34 H -0.010 1.010 35 H 0.272 0.728 36 H 0.141 0.859 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -22.794 -6.768 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C -0.021 4.021 4 C -0.155 4.155 5 C -0.082 4.082 6 C -0.155 4.155 7 C 0.353 3.647 8 O -0.429 6.429 9 O -0.269 6.269 10 C 0.004 3.996 11 C -0.022 4.022 12 O -0.330 6.330 13 C 0.133 3.867 14 C -0.588 4.588 15 H 0.077 0.923 16 C -0.190 4.190 17 N -0.568 5.568 18 Si 0.805 3.195 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.195 1.195 22 C -0.075 4.075 23 C -0.139 4.139 24 H 0.122 0.878 25 H 0.146 0.854 26 H 0.161 0.839 27 H 0.169 0.831 28 H 0.150 0.850 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.010 0.990 34 H 0.008 0.992 35 H 0.080 0.920 36 H 0.159 0.841 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.048 -22.713 -6.658 24.012 hybrid contribution -0.201 1.006 0.343 1.081 sum 3.847 -21.707 -6.316 22.932 Atomic orbital electron populations 1.24822 0.95622 1.03718 0.94940 1.21985 0.95697 0.95292 1.03190 1.19771 0.93827 0.94090 0.94367 1.21436 1.01510 0.91044 1.01515 1.21396 0.92637 0.99943 0.94232 1.19282 0.94265 0.90088 1.11903 1.21622 0.85998 0.85196 0.71887 1.90771 1.15545 1.88612 1.48014 1.86635 1.41743 1.15109 1.83432 1.23246 0.92834 0.79592 1.03887 1.22646 0.94853 0.96298 0.88431 1.87869 1.56789 1.50414 1.37925 1.19880 0.86779 0.83677 0.96361 1.21406 1.22853 1.11510 1.03026 0.92295 1.25933 0.97080 0.94084 1.01952 1.70062 1.34643 1.14170 1.37918 0.85146 0.78068 0.78538 0.77715 1.19060 1.19559 1.19452 1.21218 1.01112 0.90509 0.94612 1.21399 0.93318 0.98465 1.00752 0.87823 0.85369 0.83909 0.83095 0.85025 0.90974 0.87202 0.89778 0.92439 0.98966 0.99196 0.91954 0.84081 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 14.15 66.65 0.94 -0.60 16 2 C -0.14 -1.70 9.90 23.59 0.23 -1.46 16 3 C -0.02 -0.35 5.87 -20.07 -0.12 -0.47 16 4 C -0.14 -2.77 9.36 22.36 0.21 -2.56 16 5 C -0.06 -1.64 9.58 22.38 0.21 -1.43 16 6 C -0.15 -4.30 5.88 -20.07 -0.12 -4.41 16 7 C 0.51 16.83 7.89 70.28 0.55 17.39 16 8 O -0.54 -19.23 16.12 19.86 0.32 -18.91 16 9 O -0.35 -12.60 9.43 -53.85 -0.51 -13.11 16 10 C 0.08 2.55 5.85 71.98 0.42 2.97 16 11 C 0.05 2.03 6.33 71.98 0.46 2.48 16 12 O -0.41 -20.53 10.30 -145.58 -1.50 -22.03 16 13 C 0.21 11.75 5.69 71.23 0.41 12.16 16 14 C -0.55 -33.21 9.43 25.60 0.24 -32.96 16 15 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 16 C 0.01 0.47 5.46 84.65 0.46 0.94 16 17 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 18 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 C -0.06 -1.26 9.56 22.38 0.21 -1.05 16 23 C -0.12 -2.05 9.74 22.36 0.22 -1.83 16 24 H 0.10 1.06 6.02 -2.91 -0.02 1.04 16 25 H 0.13 0.75 8.06 -2.91 -0.02 0.72 16 26 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 27 H 0.15 2.39 6.14 -2.91 -0.02 2.37 16 28 H 0.13 3.63 7.60 -2.91 -0.02 3.61 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 31 H 0.08 2.77 8.14 -2.39 -0.02 2.76 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 36 H 0.14 2.97 7.64 -2.91 -0.02 2.95 16 37 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -72.57 331.22 6.02 -66.55 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.06 Total: 7.14 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 4.34 Total: -10.84 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.28 Total: -55.37 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -1.69 Total: -54.04 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -72.57 6.02 -66.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815239451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.656 kcal (2) G-P(sol) polarization free energy of solvation -72.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds