Wall clock time and date at job start Mon Mar 30 2020 01:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47608 * 2 1 4 4 C 1.50711 * 109.47182 * 120.00064 * 2 1 3 5 5 H 1.07993 * 119.99627 * 119.99570 * 4 2 1 6 6 C 1.37877 * 119.99872 * 299.99825 * 4 2 1 7 7 N 1.31516 * 119.99697 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99764 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47415 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47202 * 120.00300 * 8 6 4 11 11 H 1.48503 * 109.46790 * 239.99982 * 8 6 4 12 12 N 1.46497 * 109.46934 * 239.99894 * 2 1 3 13 13 C 1.34774 * 120.00115 * 85.00529 * 12 2 1 14 14 O 1.21689 * 119.99895 * 359.97438 * 13 12 2 15 15 C 1.46725 * 120.00277 * 179.97438 * 13 12 2 16 16 C 1.36667 * 126.02542 * 179.97438 * 15 13 12 17 17 C 1.40811 * 107.05445 * 180.02562 * 16 15 13 18 18 C 1.48505 * 126.28518 * 180.02562 * 17 16 15 19 19 N 1.34033 * 126.66812 * 359.69301 * 18 17 16 20 20 N 1.28988 * 107.26729 * 179.88800 * 19 18 17 21 21 N 1.28728 * 108.94098 * 0.37763 * 20 19 18 22 22 H 0.96998 * 125.34826 * 179.78885 * 21 20 19 23 23 N 1.28872 * 109.31091 * 359.75741 * 21 20 19 24 24 C 1.36559 * 107.43152 * 0.02562 * 17 16 15 25 25 N 1.34844 * 108.61363 * 359.97438 * 24 17 16 26 26 H 0.97003 * 125.52877 * 179.73578 * 25 24 17 27 27 H 1.08998 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46843 * 300.00240 * 1 2 3 29 29 H 1.09000 * 109.47085 * 59.99774 * 1 2 3 30 30 H 0.97007 * 119.99573 * 180.02562 * 7 6 4 31 31 H 0.97005 * 119.99872 * 265.00051 * 12 2 1 32 32 H 1.07999 * 126.47666 * 0.02562 * 16 15 13 33 33 H 1.08004 * 125.69444 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1204 4.0080 9 1 3.1454 -2.2878 3.6038 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8573 1.1623 -2.4118 15 6 2.6367 -0.7098 -3.5550 16 6 2.8134 -0.1513 -4.7897 17 6 3.2950 -1.1673 -5.6374 18 6 3.6325 -1.0246 -7.0766 19 7 3.5321 0.0891 -7.8156 20 7 3.9233 -0.2066 -9.0087 21 7 4.2528 -1.4505 -9.0441 22 1 4.5778 -1.9228 -9.8265 23 7 4.0835 -1.9696 -7.8768 24 6 3.3949 -2.3079 -4.8932 25 7 2.9980 -2.0360 -3.6335 26 1 2.9679 -2.6726 -2.9022 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7088 1.1613 3.4845 31 1 2.2490 -1.6318 -1.1526 32 1 2.6202 0.8754 -5.0636 33 1 3.7349 -3.2676 -5.2535 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820219923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:27 Heat of formation + Delta-G solvation = 128.048162 kcal Electronic energy + Delta-G solvation = -19971.629937 eV Core-core repulsion = 16650.202156 eV Total energy + Delta-G solvation = -3321.427781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.44662 -41.35989 -38.45120 -34.89539 -34.43988 -33.61781 -32.47150 -30.85977 -29.85601 -28.34533 -25.31508 -24.75006 -24.16972 -22.84564 -20.63925 -20.29934 -19.72190 -19.11299 -18.49723 -17.15368 -16.39298 -15.49603 -15.19960 -14.84423 -14.79175 -14.15644 -13.93443 -13.52445 -13.31521 -12.97642 -12.56794 -12.45582 -12.14276 -11.75679 -11.44768 -11.16489 -11.14503 -11.11760 -11.01298 -10.80576 -10.36753 -10.29427 -9.35314 -9.10354 -8.86547 -8.62108 -8.30220 -7.96232 -6.17568 -4.27571 0.96614 1.51284 1.80418 2.17994 2.99463 3.09474 3.20042 3.27803 3.29823 3.74234 3.91209 4.04559 4.21125 4.33631 4.95180 5.14951 5.24187 5.30578 5.44795 5.48611 5.92669 6.12291 6.30285 6.56795 6.73537 6.80767 6.91327 7.09127 7.24161 7.34690 7.50109 7.63114 7.85506 8.09057 8.14969 8.53239 8.70398 8.97113 9.39904 10.88412 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.046620 B = 0.003187 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.457118 B = 8784.575283 C = 9166.690455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.706 5.706 13 C 0.572 3.428 14 O -0.535 6.535 15 C -0.031 4.031 16 C -0.075 4.075 17 C -0.124 4.124 18 C 0.269 3.731 19 N -0.269 5.269 20 N -0.055 5.055 21 N -0.235 5.235 22 H 0.472 0.528 23 N -0.312 5.312 24 C 0.071 3.929 25 N -0.528 5.528 26 H 0.424 0.576 27 H 0.026 0.974 28 H 0.092 0.908 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.382 0.618 32 H 0.158 0.842 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.936 -10.089 -17.838 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.518 5.518 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.354 5.354 13 C 0.356 3.644 14 O -0.413 6.413 15 C -0.143 4.143 16 C -0.102 4.102 17 C -0.135 4.135 18 C -0.011 4.011 19 N -0.142 5.142 20 N -0.051 5.051 21 N -0.080 5.080 22 H 0.326 0.674 23 N -0.164 5.164 24 C -0.072 4.072 25 N -0.123 5.123 26 H 0.263 0.737 27 H 0.045 0.955 28 H 0.110 0.890 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.214 0.786 32 H 0.176 0.824 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.648 -8.805 -18.067 20.877 hybrid contribution 0.606 -1.869 1.023 2.215 sum 6.255 -10.674 -17.043 21.061 Atomic orbital electron populations 1.22091 0.98243 0.99186 1.01160 1.18813 0.91160 0.94113 0.79573 0.92986 1.21215 1.32643 1.13305 0.90295 0.92102 1.24889 0.94754 0.94945 0.99087 1.69912 1.35652 1.22351 1.23898 0.86381 0.78596 0.79482 0.82544 1.19799 1.20809 1.20847 1.46473 1.65176 1.13074 1.10648 1.17064 0.78851 0.86584 0.81853 1.90825 1.51326 1.14782 1.84325 1.20661 1.12358 0.83850 0.97453 1.20983 0.99824 0.99606 0.89779 1.16338 1.14979 0.95361 0.86823 1.22841 0.97867 0.85155 0.95208 1.76140 1.17832 1.24089 0.96177 1.78908 1.12041 0.97817 1.16298 1.47649 1.42838 1.07185 1.10361 0.67437 1.74889 1.22579 1.26261 0.92630 1.21767 1.02263 0.99425 0.83705 1.41901 1.49585 1.10175 1.10669 0.73721 0.95475 0.88997 0.96399 0.92517 0.78620 0.82442 0.80311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.71 -14.08 5.06 -56.22 -0.28 -14.36 16 13 C 0.57 11.40 7.75 -12.83 -0.10 11.31 16 14 O -0.54 -12.89 16.53 5.20 0.09 -12.80 16 15 C -0.03 -0.48 7.00 -82.38 -0.58 -1.06 16 16 C -0.08 -1.15 10.56 -39.18 -0.41 -1.57 16 17 C -0.12 -1.62 6.10 -105.30 -0.64 -2.26 16 18 C 0.27 3.49 8.18 -156.32 -1.28 2.21 16 19 N -0.27 -3.78 12.54 32.16 0.40 -3.38 16 20 N -0.06 -0.63 13.47 60.35 0.81 0.18 16 21 N -0.24 -1.91 7.90 60.35 0.48 -1.44 16 22 H 0.47 1.40 8.96 -340.38 -3.05 -1.65 16 23 N -0.31 -3.27 12.39 32.18 0.40 -2.87 16 24 C 0.07 0.72 11.84 -16.83 -0.20 0.52 16 25 N -0.53 -5.81 5.95 -9.54 -0.06 -5.87 16 26 H 0.42 3.46 8.16 -40.82 -0.33 3.13 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.38 6.26 7.64 -40.82 -0.31 5.95 16 32 H 0.16 2.52 8.06 -52.49 -0.42 2.09 16 33 H 0.18 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 300.14 15.07 4.52 4.52 Total: -1.00 -33.68 300.14 -7.11 -40.79 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.64 Total: 4.00 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -3.44 Total: -0.15 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 2.38 Total: -51.49 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.68 -7.11 -40.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820219923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.834 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds