Wall clock time and date at job start Mon Mar 30 2020 01:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47608 * 2 1 4 4 C 1.50711 * 109.47182 * 120.00064 * 2 1 3 5 5 H 1.07993 * 119.99627 * 119.99570 * 4 2 1 6 6 C 1.37877 * 119.99872 * 299.99825 * 4 2 1 7 7 N 1.31516 * 119.99697 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99764 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47415 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47202 * 120.00300 * 8 6 4 11 11 H 1.48503 * 109.46790 * 239.99982 * 8 6 4 12 12 N 1.46497 * 109.46934 * 239.99894 * 2 1 3 13 13 C 1.34774 * 120.00115 * 85.00529 * 12 2 1 14 14 O 1.21689 * 119.99895 * 359.97438 * 13 12 2 15 15 C 1.46725 * 120.00277 * 179.97438 * 13 12 2 16 16 C 1.36667 * 126.02542 * 179.97438 * 15 13 12 17 17 C 1.40811 * 107.05445 * 180.02562 * 16 15 13 18 18 C 1.48505 * 126.28518 * 180.02562 * 17 16 15 19 19 N 1.34033 * 126.66812 * 359.69301 * 18 17 16 20 20 N 1.28988 * 107.26729 * 179.88800 * 19 18 17 21 21 N 1.28728 * 108.94098 * 0.37763 * 20 19 18 22 22 H 0.96998 * 125.34826 * 179.78885 * 21 20 19 23 23 N 1.28872 * 109.31091 * 359.75741 * 21 20 19 24 24 C 1.36559 * 107.43152 * 0.02562 * 17 16 15 25 25 N 1.34844 * 108.61363 * 359.97438 * 24 17 16 26 26 H 0.97003 * 125.52877 * 179.73578 * 25 24 17 27 27 H 1.08998 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46843 * 300.00240 * 1 2 3 29 29 H 1.09000 * 109.47085 * 59.99774 * 1 2 3 30 30 H 0.97007 * 119.99573 * 180.02562 * 7 6 4 31 31 H 0.97005 * 119.99872 * 265.00051 * 12 2 1 32 32 H 1.07999 * 126.47666 * 0.02562 * 16 15 13 33 33 H 1.08004 * 125.69444 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1204 4.0080 9 1 3.1454 -2.2878 3.6038 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8573 1.1623 -2.4118 15 6 2.6367 -0.7098 -3.5550 16 6 2.8134 -0.1513 -4.7897 17 6 3.2950 -1.1673 -5.6374 18 6 3.6325 -1.0246 -7.0766 19 7 3.5321 0.0891 -7.8156 20 7 3.9233 -0.2066 -9.0087 21 7 4.2528 -1.4505 -9.0441 22 1 4.5778 -1.9228 -9.8265 23 7 4.0835 -1.9696 -7.8768 24 6 3.3949 -2.3079 -4.8932 25 7 2.9980 -2.0360 -3.6335 26 1 2.9679 -2.6726 -2.9022 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.7088 1.1613 3.4845 31 1 2.2490 -1.6318 -1.1526 32 1 2.6202 0.8754 -5.0636 33 1 3.7349 -3.2676 -5.2535 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820219923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:26 Heat of formation + Delta-G solvation = 101.238255 kcal Electronic energy + Delta-G solvation = -19972.792502 eV Core-core repulsion = 16650.202156 eV Total energy + Delta-G solvation = -3322.590346 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.30210 -42.44735 -40.07900 -36.75947 -35.32878 -34.60671 -34.25314 -31.90282 -31.43735 -29.77447 -27.34405 -25.61422 -25.21684 -24.22422 -22.24715 -21.30046 -21.01521 -20.41742 -19.56270 -18.14239 -17.99949 -17.16860 -16.76850 -16.20099 -15.96792 -15.64578 -14.94995 -14.87798 -14.68393 -14.44216 -14.28848 -13.70695 -13.53720 -13.04191 -12.98494 -12.88323 -12.75003 -12.33275 -12.28163 -12.11784 -12.02572 -12.01835 -11.11681 -11.04644 -10.61344 -9.98415 -9.83015 -9.21352 -8.17301 -6.35217 0.13824 0.49648 0.65506 1.45954 1.46998 1.56005 1.58677 2.03944 2.06918 2.31215 2.46043 2.52784 2.96524 3.13867 3.29901 3.97735 4.21883 4.30258 4.37684 4.57033 4.74751 4.90370 4.93835 5.03389 5.09015 5.40597 5.47830 5.55077 5.61065 5.72387 5.75243 5.91065 6.08479 6.41411 6.71431 6.88996 7.27865 7.29481 7.45299 8.89419 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.046620 B = 0.003187 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.457118 B = 8784.575283 C = 9166.690455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.001 0.999 4 C -0.546 4.546 5 H 0.078 0.922 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.257 1.257 10 H -0.286 1.286 11 H -0.280 1.280 12 N -0.698 5.698 13 C 0.572 3.428 14 O -0.589 6.589 15 C -0.055 4.055 16 C -0.080 4.080 17 C -0.145 4.145 18 C 0.255 3.745 19 N -0.310 5.310 20 N -0.063 5.063 21 N -0.202 5.202 22 H 0.493 0.507 23 N -0.297 5.297 24 C 0.118 3.882 25 N -0.510 5.510 26 H 0.441 0.559 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.012 0.988 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.137 0.863 33 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 -13.828 -18.781 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.019 0.981 4 C -0.584 4.584 5 H 0.096 0.904 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.180 1.180 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.347 5.347 13 C 0.360 3.640 14 O -0.470 6.470 15 C -0.167 4.167 16 C -0.108 4.108 17 C -0.155 4.155 18 C -0.025 4.025 19 N -0.182 5.182 20 N -0.058 5.058 21 N -0.053 5.053 22 H 0.352 0.648 23 N -0.150 5.150 24 C -0.026 4.026 25 N -0.106 5.106 26 H 0.283 0.717 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.238 0.762 32 H 0.155 0.845 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.126 -12.603 -19.034 23.915 hybrid contribution 0.208 -0.751 1.127 1.370 sum 7.334 -13.354 -17.907 23.511 Atomic orbital electron populations 1.21920 0.98165 0.99676 0.99690 1.18405 0.91216 0.92080 0.81546 0.98145 1.21556 1.32641 1.13655 0.90534 0.90434 1.25822 0.94857 0.95578 1.02423 1.70069 1.36942 1.23970 1.24603 0.85264 0.78031 0.78524 0.78297 1.18030 1.21223 1.20548 1.46105 1.65186 1.13888 1.09493 1.17549 0.77680 0.86075 0.82724 1.90789 1.53613 1.17306 1.85305 1.19756 1.15534 0.85996 0.95432 1.20954 0.99736 0.99552 0.90526 1.16409 1.16215 0.95631 0.87258 1.22843 0.98796 0.85417 0.95413 1.76130 1.19483 1.25441 0.97193 1.78851 1.12534 0.98878 1.15559 1.47732 1.40544 1.06440 1.10599 0.64776 1.74833 1.21933 1.25418 0.92843 1.22453 0.97954 0.99983 0.82162 1.41801 1.48544 1.08535 1.11752 0.71750 0.93786 0.91375 0.96926 0.92537 0.76242 0.84537 0.75453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.81 9.26 71.98 0.67 -6.14 16 2 C 0.27 13.80 2.56 44.25 0.11 13.91 16 3 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 4 C -0.55 -27.93 8.73 25.60 0.22 -27.70 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -52.05 11.32 21.45 0.24 -51.81 16 8 Si 0.97 40.85 29.54 68.60 2.03 42.88 16 9 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 10 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 12 N -0.70 -27.97 5.06 -450.02 -2.28 -30.25 16 13 C 0.57 23.47 7.75 86.46 0.67 24.14 16 14 O -0.59 -30.16 16.53 -4.31 -0.07 -30.23 16 15 C -0.06 -1.69 7.00 40.08 0.28 -1.41 16 16 C -0.08 -2.47 10.56 22.53 0.24 -2.23 16 17 C -0.15 -3.50 6.10 -20.30 -0.12 -3.63 16 18 C 0.26 6.15 8.18 137.40 1.12 7.27 16 19 N -0.31 -8.54 12.54 -52.17 -0.65 -9.19 16 20 N -0.06 -1.35 13.47 37.02 0.50 -0.85 16 21 N -0.20 -2.74 7.90 37.02 0.29 -2.45 16 22 H 0.49 1.32 8.96 -347.54 -3.12 -1.79 16 23 N -0.30 -5.30 12.39 -52.11 -0.65 -5.94 16 24 C 0.12 1.91 11.84 83.84 0.99 2.91 16 25 N -0.51 -9.66 5.95 -184.11 -1.09 -10.76 16 26 H 0.44 5.48 8.16 -92.71 -0.76 4.73 16 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 29 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 31 H 0.40 12.59 7.64 -92.70 -0.71 11.88 16 32 H 0.14 4.70 8.06 -2.91 -0.02 4.67 16 33 H 0.23 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -77.09 300.14 -0.42 -77.51 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -3.37 Total: 12.82 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 4.63 Total: 8.26 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -3.64 Total: -111.24 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.07 Total: -30.23 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -77.09 -0.42 -77.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820219923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.751 kcal (2) G-P(sol) polarization free energy of solvation -77.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds