Wall clock time and date at job start Mon Mar 30 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.46907 * 240.00235 * 3 2 1 5 5 H 1.48504 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47302 * 120.00188 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.38296 * 119.92420 * 90.00078 * 12 11 10 14 14 C 1.38125 * 120.11321 * 179.97438 * 13 12 11 15 15 C 1.38797 * 119.96139 * 359.97438 * 14 13 12 16 16 N 1.40261 * 120.07497 * 179.97438 * 15 14 13 17 17 C 1.34709 * 126.83477 * 179.71684 * 16 15 14 18 18 N 1.30862 * 108.02922 * 179.83049 * 17 16 15 19 19 C 1.33251 * 109.84815 * 0.44091 * 18 17 16 20 20 N 1.30755 * 108.99026 * 359.72534 * 19 18 17 21 21 C 1.39016 * 119.84352 * 0.02562 * 15 14 13 22 22 F 1.35102 * 120.05515 * 180.02562 * 21 15 14 23 23 C 1.38243 * 119.92545 * 269.72241 * 12 11 10 24 24 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 26 26 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 27 27 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 28 28 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 29 29 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 30 30 H 1.08004 * 119.94112 * 359.95750 * 13 12 11 31 31 H 1.08005 * 120.02089 * 179.97438 * 14 13 12 32 32 H 1.07997 * 125.98072 * 359.97438 * 17 16 15 33 33 H 1.07997 * 125.50435 * 179.74543 * 19 18 17 34 34 H 1.08003 * 119.97930 * 0.02661 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5145 -6.0261 -0.0005 13 6 2.9757 -6.5384 1.1984 14 6 3.9005 -7.5644 1.2036 15 6 4.3675 -8.0826 0.0037 16 7 5.3071 -9.1241 0.0061 17 6 5.8451 -9.7289 -1.0706 18 7 6.6787 -10.6442 -0.6466 19 6 6.6932 -10.6607 0.6857 20 7 5.8698 -9.7481 1.1315 21 6 3.9028 -7.5663 -1.2005 22 9 4.3541 -8.0679 -2.3709 23 6 2.9730 -6.5419 -1.1983 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8403 -3.5488 -0.7819 28 1 0.8798 -4.9817 0.8886 29 1 0.8805 -4.9812 -0.8914 30 1 2.6123 -6.1354 2.1322 31 1 4.2600 -7.9631 2.1407 32 1 5.6283 -9.4972 -2.1029 33 1 7.2891 -11.3209 1.2983 34 1 2.6079 -6.1425 -2.1330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821097620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:48 Heat of formation + Delta-G solvation = 79.169659 kcal Electronic energy + Delta-G solvation = -19797.857455 eV Core-core repulsion = 16454.390181 eV Total energy + Delta-G solvation = -3343.467274 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.47468 -42.49821 -39.50524 -35.87781 -34.17386 -32.48787 -31.67173 -30.94252 -30.09485 -27.11805 -24.93772 -23.72044 -22.94348 -21.83234 -21.60401 -21.14478 -18.64137 -17.40970 -16.63956 -16.50148 -16.37165 -15.94023 -15.61548 -14.88797 -14.80469 -14.49544 -14.30190 -14.13203 -13.68695 -13.13678 -12.78097 -12.67342 -12.47658 -11.96757 -11.59285 -11.41770 -11.28567 -11.01654 -10.74628 -10.73609 -10.39507 -10.16120 -10.02261 -9.31678 -9.17399 -8.57962 -8.50697 -7.49097 -6.11157 -4.13721 0.36255 0.89709 1.68761 1.83931 2.61750 3.29250 3.32108 3.33512 3.36957 3.64870 3.97734 4.15228 4.36525 4.40832 4.60146 4.75958 5.02864 5.05844 5.24923 5.28489 5.32217 5.62069 5.64151 5.79884 5.84901 5.95344 6.02628 6.08614 6.38861 6.42030 6.68581 7.08013 7.27519 7.66726 7.68968 8.00788 8.20920 8.44859 8.94639 9.51661 10.99802 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.035412 B = 0.003028 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.506246 B = 9243.849330 C = 9272.048250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.683 5.683 11 C 0.090 3.910 12 C -0.036 4.036 13 C -0.083 4.083 14 C -0.084 4.084 15 C 0.105 3.895 16 N -0.325 5.325 17 C 0.256 3.744 18 N -0.542 5.542 19 C 0.203 3.797 20 N -0.315 5.315 21 C 0.086 3.914 22 F -0.134 7.134 23 C -0.122 4.122 24 H 0.263 0.737 25 H -0.011 1.011 26 H 0.030 0.970 27 H 0.331 0.669 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.231 0.769 33 H 0.223 0.777 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.332 -18.747 -0.962 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.314 5.314 11 C -0.039 4.039 12 C -0.037 4.037 13 C -0.103 4.103 14 C -0.104 4.104 15 C 0.011 3.989 16 N -0.108 5.108 17 C -0.039 4.039 18 N -0.268 5.268 19 C -0.099 4.099 20 N -0.141 5.141 21 C 0.064 3.936 22 F -0.113 7.113 23 C -0.142 4.142 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.048 0.952 27 H 0.148 0.852 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.247 0.753 33 H 0.240 0.760 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.338 -18.699 0.246 20.089 hybrid contribution 0.141 0.868 -1.322 1.588 sum 7.479 -17.831 -1.076 19.366 Atomic orbital electron populations 1.69946 1.06096 1.27064 1.50553 1.24984 0.94894 0.99419 0.95177 0.86523 0.79425 0.82519 0.78726 1.20220 1.21293 1.20090 1.21118 0.93527 0.90119 1.50871 0.91942 1.19598 0.90504 0.87075 0.96046 1.60796 1.21105 1.00321 1.49174 1.20966 0.92977 0.88362 1.01613 1.20097 0.96441 0.95527 0.91653 1.21148 0.95559 0.94442 0.99108 1.20866 0.96904 0.96465 0.96179 1.17490 0.95034 0.92006 0.94385 1.47649 1.31397 1.26307 1.05472 1.26890 0.90978 0.89901 0.96140 1.70663 1.22350 1.22334 1.11426 1.26183 0.96618 0.96464 0.90641 1.78131 1.15576 1.12857 1.07491 1.17166 0.99656 0.98015 0.78776 1.91374 1.87708 1.86128 1.46056 1.20979 0.97092 0.95719 1.00445 0.92745 0.99322 0.95153 0.85231 0.89976 0.94587 0.83694 0.83543 0.75324 0.76038 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.13 9.32 -34.44 -0.32 -14.45 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.19 4.77 5.44 -4.98 -0.03 4.75 16 10 N -0.68 -13.31 6.48 -116.34 -0.75 -14.06 16 11 C 0.09 1.36 5.81 -4.97 -0.03 1.34 16 12 C -0.04 -0.45 5.39 -104.60 -0.56 -1.02 16 13 C -0.08 -0.97 9.69 -39.60 -0.38 -1.36 16 14 C -0.08 -0.97 9.68 -39.42 -0.38 -1.35 16 15 C 0.10 1.27 6.70 -83.50 -0.56 0.71 16 16 N -0.32 -4.07 3.82 -11.76 -0.04 -4.11 16 17 C 0.26 2.92 11.72 -90.38 -1.06 1.86 16 18 N -0.54 -6.49 11.19 -15.75 -0.18 -6.67 16 19 C 0.20 2.17 13.03 -91.77 -1.20 0.97 16 20 N -0.31 -3.94 12.06 29.30 0.35 -3.59 16 21 C 0.09 0.99 7.23 -39.25 -0.28 0.71 16 22 F -0.13 -1.42 14.03 2.25 0.03 -1.39 16 23 C -0.12 -1.42 9.67 -39.54 -0.38 -1.80 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 25 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.33 6.21 8.71 -39.29 -0.34 5.87 16 28 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 29 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.15 1.58 7.74 -52.48 -0.41 1.18 16 32 H 0.23 2.05 5.80 -52.49 -0.30 1.75 16 33 H 0.22 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -30.98 305.86 -9.10 -40.08 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.55 Total: 2.43 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -5.28 Total: -8.15 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.11 Total: -53.73 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.03 Total: -1.39 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.98 -9.10 -40.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821097620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.250 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds