Wall clock time and date at job start Mon Mar 30 2020 01:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.46907 * 240.00235 * 3 2 1 5 5 H 1.48504 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47302 * 120.00188 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.38296 * 119.92420 * 90.00078 * 12 11 10 14 14 C 1.38125 * 120.11321 * 179.97438 * 13 12 11 15 15 C 1.38797 * 119.96139 * 359.97438 * 14 13 12 16 16 N 1.40261 * 120.07497 * 179.97438 * 15 14 13 17 17 C 1.34709 * 126.83477 * 179.71684 * 16 15 14 18 18 N 1.30862 * 108.02922 * 179.83049 * 17 16 15 19 19 C 1.33251 * 109.84815 * 0.44091 * 18 17 16 20 20 N 1.30755 * 108.99026 * 359.72534 * 19 18 17 21 21 C 1.39016 * 119.84352 * 0.02562 * 15 14 13 22 22 F 1.35102 * 120.05515 * 180.02562 * 21 15 14 23 23 C 1.38243 * 119.92545 * 269.72241 * 12 11 10 24 24 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 26 26 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 27 27 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 28 28 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 29 29 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 30 30 H 1.08004 * 119.94112 * 359.95750 * 13 12 11 31 31 H 1.08005 * 120.02089 * 179.97438 * 14 13 12 32 32 H 1.07997 * 125.98072 * 359.97438 * 17 16 15 33 33 H 1.07997 * 125.50435 * 179.74543 * 19 18 17 34 34 H 1.08003 * 119.97930 * 0.02661 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5145 -6.0261 -0.0005 13 6 2.9757 -6.5384 1.1984 14 6 3.9005 -7.5644 1.2036 15 6 4.3675 -8.0826 0.0037 16 7 5.3071 -9.1241 0.0061 17 6 5.8451 -9.7289 -1.0706 18 7 6.6787 -10.6442 -0.6466 19 6 6.6932 -10.6607 0.6857 20 7 5.8698 -9.7481 1.1315 21 6 3.9028 -7.5663 -1.2005 22 9 4.3541 -8.0679 -2.3709 23 6 2.9730 -6.5419 -1.1983 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8403 -3.5488 -0.7819 28 1 0.8798 -4.9817 0.8886 29 1 0.8805 -4.9812 -0.8914 30 1 2.6123 -6.1354 2.1322 31 1 4.2600 -7.9631 2.1407 32 1 5.6283 -9.4972 -2.1029 33 1 7.2891 -11.3209 1.2983 34 1 2.6079 -6.1425 -2.1330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821097620.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:47 Heat of formation + Delta-G solvation = 61.745496 kcal Electronic energy + Delta-G solvation = -19798.613023 eV Core-core repulsion = 16454.390181 eV Total energy + Delta-G solvation = -3344.222842 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.34265 -43.36651 -40.46899 -37.27488 -35.45919 -34.29806 -32.55208 -31.89472 -31.29753 -28.73912 -26.32569 -24.62237 -24.12228 -23.31103 -22.71245 -22.16025 -19.53679 -18.78298 -18.04259 -17.51526 -17.38992 -16.81295 -16.68455 -16.49188 -16.04962 -15.81372 -15.28684 -15.16575 -14.98757 -14.44784 -14.12672 -13.70546 -13.56923 -13.41746 -13.09965 -12.85360 -12.63165 -12.52948 -12.34017 -12.03773 -11.84484 -11.33569 -11.26127 -11.05303 -10.64353 -10.07987 -9.50521 -9.11427 -8.21566 -6.31964 -0.56209 -0.01021 0.78272 0.97026 1.43345 1.45673 1.53706 1.77995 2.35651 2.43355 2.73984 3.12489 3.17317 3.30971 3.49603 3.65463 3.85284 3.86073 4.11105 4.16447 4.42488 4.47991 4.70428 4.77532 4.86507 4.91484 5.08671 5.11001 5.28190 5.30148 5.43399 5.48603 5.61902 5.78507 6.02604 6.41724 6.69830 6.83205 6.89038 7.38867 8.89415 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.035412 B = 0.003028 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.506246 B = 9243.849330 C = 9272.048250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.683 5.683 11 C 0.094 3.906 12 C -0.045 4.045 13 C -0.079 4.079 14 C -0.084 4.084 15 C 0.100 3.900 16 N -0.336 5.336 17 C 0.255 3.745 18 N -0.559 5.559 19 C 0.208 3.792 20 N -0.340 5.340 21 C 0.086 3.914 22 F -0.128 7.128 23 C -0.116 4.116 24 H 0.265 0.735 25 H -0.033 1.033 26 H 0.006 0.994 27 H 0.336 0.664 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.249 0.751 33 H 0.259 0.741 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.652 -19.251 -1.117 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.314 5.314 11 C -0.035 4.035 12 C -0.046 4.046 13 C -0.098 4.098 14 C -0.104 4.104 15 C 0.007 3.993 16 N -0.120 5.120 17 C -0.039 4.039 18 N -0.285 5.285 19 C -0.094 4.094 20 N -0.166 5.166 21 C 0.064 3.936 22 F -0.107 7.107 23 C -0.136 4.136 24 H 0.074 0.926 25 H -0.015 1.015 26 H 0.024 0.976 27 H 0.153 0.847 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.172 0.828 31 H 0.171 0.829 32 H 0.264 0.736 33 H 0.275 0.725 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.674 -19.230 0.089 21.096 hybrid contribution -0.232 0.888 -1.283 1.577 sum 8.442 -18.342 -1.194 20.226 Atomic orbital electron populations 1.70067 1.07673 1.28043 1.51489 1.25885 0.95739 1.03178 0.94682 0.85448 0.78158 0.77977 0.79105 1.19201 1.20931 1.19447 1.21522 0.93823 0.91516 1.50618 0.91830 1.19229 0.90559 0.88396 0.93778 1.60619 1.20386 1.00851 1.49539 1.20929 0.93576 0.87030 1.01945 1.19811 0.96828 0.95450 0.92558 1.21235 0.95195 0.94206 0.99194 1.20907 0.96789 0.96337 0.96369 1.17681 0.94910 0.91948 0.94798 1.47741 1.31791 1.26649 1.05824 1.27323 0.90445 0.89448 0.96715 1.70709 1.22841 1.22788 1.12175 1.26963 0.95883 0.95982 0.90568 1.78106 1.16585 1.13811 1.08077 1.17100 0.99622 0.97971 0.78877 1.91384 1.87606 1.86014 1.45648 1.21061 0.96606 0.95359 1.00588 0.92617 1.01510 0.97589 0.84662 0.89936 0.93986 0.82811 0.82947 0.73592 0.72503 0.82201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 13.29 21.45 0.28 -54.41 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.54 -29.41 9.32 25.60 0.24 -29.17 16 8 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 9 C 0.21 10.42 5.44 85.56 0.47 10.88 16 10 N -0.68 -26.49 6.48 -521.98 -3.38 -29.88 16 11 C 0.09 2.80 5.81 85.55 0.50 3.29 16 12 C -0.05 -1.09 5.39 -19.85 -0.11 -1.20 16 13 C -0.08 -1.75 9.69 22.26 0.22 -1.54 16 14 C -0.08 -1.84 9.68 22.38 0.22 -1.62 16 15 C 0.10 2.31 6.70 38.11 0.26 2.56 16 16 N -0.34 -7.97 3.82 -191.11 -0.73 -8.70 16 17 C 0.26 5.45 11.72 180.26 2.11 7.56 16 18 N -0.56 -12.47 11.19 -203.74 -2.28 -14.74 16 19 C 0.21 4.04 13.03 180.75 2.35 6.40 16 20 N -0.34 -8.04 12.06 -61.22 -0.74 -8.78 16 21 C 0.09 1.85 7.23 22.48 0.16 2.02 16 22 F -0.13 -2.48 14.03 44.97 0.63 -1.85 16 23 C -0.12 -2.51 9.67 22.30 0.22 -2.30 16 24 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 25 H -0.03 -1.75 8.14 -2.39 -0.02 -1.77 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.34 12.43 8.71 -89.69 -0.78 11.65 16 28 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 29 H 0.04 1.21 8.08 -2.39 -0.02 1.19 16 30 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.15 3.12 7.74 -2.91 -0.02 3.10 16 32 H 0.25 4.00 5.80 -2.91 -0.02 3.98 16 33 H 0.26 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -65.52 305.86 3.26 -62.26 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.36 Total: 13.38 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 7.09 Total: -2.44 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -6.85 Total: -116.51 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.63 Total: -1.85 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -65.52 3.26 -62.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821097620.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.002 kcal (2) G-P(sol) polarization free energy of solvation -65.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds