Wall clock time and date at job start Mon Mar 30 2020 01:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36864 * 120.00289 * 2 1 4 4 H 1.08002 * 119.99746 * 147.76580 * 3 2 1 5 5 C 1.39004 * 120.00152 * 327.76448 * 3 2 1 6 6 N 1.31391 * 120.00055 * 49.32671 * 5 3 2 7 7 Si 1.86804 * 120.00060 * 229.32314 * 5 3 2 8 8 H 1.48499 * 109.47033 * 60.00412 * 7 5 3 9 9 H 1.48509 * 109.46920 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47151 * 299.99998 * 7 5 3 11 11 C 1.34776 * 119.99309 * 180.02562 * 2 1 3 12 12 O 1.21742 * 119.99622 * 185.29302 * 11 2 1 13 13 C 1.46592 * 120.00521 * 5.28772 * 11 2 1 14 14 C 1.37778 * 126.11663 * 351.69000 * 13 11 2 15 15 C 1.40783 * 106.89818 * 179.97438 * 14 13 11 16 16 C 1.48496 * 126.25117 * 179.97438 * 15 14 13 17 17 N 1.34039 * 126.67229 * 359.68784 * 16 15 14 18 18 N 1.28989 * 107.27175 * 179.83560 * 17 16 15 19 19 N 1.28728 * 108.94010 * 0.42936 * 18 17 16 20 20 H 0.96993 * 125.34479 * 179.74360 * 19 18 17 21 21 N 1.28876 * 109.31505 * 359.72842 * 19 18 17 22 22 C 1.36578 * 107.50167 * 359.74062 * 15 14 13 23 23 N 1.34850 * 108.82836 * 0.42642 * 22 15 14 24 24 C 1.46503 * 125.49392 * 179.83622 * 23 22 15 25 25 H 1.08993 * 109.47439 * 235.75177 * 1 2 3 26 26 H 1.09002 * 109.46520 * 355.74936 * 1 2 3 27 27 H 1.09000 * 109.47318 * 115.74416 * 1 2 3 28 28 H 0.97000 * 120.00355 * 180.02562 * 6 5 3 29 29 H 1.08002 * 126.55201 * 359.97408 * 14 13 11 30 30 H 1.07997 * 125.58051 * 180.27986 * 22 15 14 31 31 H 1.09001 * 109.46906 * 263.43890 * 24 23 22 32 32 H 1.08999 * 109.47329 * 143.44220 * 24 23 22 33 33 H 1.09001 * 109.47276 * 23.43703 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1852 0.0000 4 1 3.1046 1.2572 0.4989 5 6 1.6152 2.2963 -0.6421 6 7 0.3713 2.6523 -0.4134 7 14 2.6658 3.2835 -1.8301 8 1 3.1121 2.4066 -2.9424 9 1 1.8679 4.4098 -2.3781 10 1 3.8521 3.8184 -1.1149 11 6 2.1388 -1.1673 -0.0005 12 8 3.3523 -1.1696 0.0967 13 6 1.4105 -2.4340 -0.1181 14 6 0.0424 -2.5914 -0.0735 15 6 -0.2165 -3.9667 -0.2264 16 6 -1.5537 -4.6122 -0.2413 17 7 -2.7391 -4.0011 -0.1066 18 7 -3.6498 -4.9117 -0.1791 19 7 -3.0841 -6.0564 -0.3430 20 1 -3.5472 -6.9048 -0.4234 21 7 -1.8057 -5.8981 -0.3838 22 6 0.9867 -4.5984 -0.3638 23 7 1.9711 -3.6795 -0.2934 24 6 3.4055 -3.9603 -0.3936 25 1 -0.3634 -0.5783 0.8494 26 1 -0.3632 1.0249 0.0762 27 1 -0.3634 -0.4464 -0.9257 28 1 -0.0017 3.4274 -0.8617 29 1 -0.6912 -1.8091 0.0542 30 1 1.1266 -5.6601 -0.5034 31 1 3.8304 -4.0424 0.6068 32 1 3.8976 -3.1503 -0.9320 33 1 3.5558 -4.8972 -0.9301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821592532.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:50 Heat of formation + Delta-G solvation = 176.310881 kcal Electronic energy + Delta-G solvation = -20858.585041 eV Core-core repulsion = 17539.250088 eV Total energy + Delta-G solvation = -3319.334953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.20445 -40.98942 -37.90651 -34.91616 -34.21099 -33.50075 -32.42259 -31.47198 -29.03034 -26.91094 -26.00962 -24.88175 -24.26987 -23.32841 -21.30962 -20.23606 -18.90392 -18.43826 -17.23233 -16.92114 -16.27795 -15.33235 -15.18194 -14.65076 -14.29696 -14.10778 -13.81101 -13.62718 -13.25209 -12.59491 -12.35734 -12.20086 -12.03428 -11.84706 -11.67805 -11.61651 -11.34518 -11.15702 -10.89262 -10.69947 -10.58429 -10.37085 -9.88173 -8.68390 -8.50304 -8.23368 -7.77257 -7.72084 -6.72096 -3.81196 1.19616 1.83466 2.24974 2.39649 3.06287 3.19016 3.27311 3.36111 3.48366 4.03043 4.15713 4.27812 4.47729 4.76319 4.99071 5.11948 5.25513 5.58368 5.63906 5.68654 5.77223 5.84247 5.97517 6.37312 6.47431 6.51714 6.57410 6.66797 7.04517 7.15548 7.34540 7.53619 7.67237 8.21945 8.38994 8.49257 9.08676 9.32824 9.97563 10.28249 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.022357 B = 0.005048 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.080157 B = 5545.598058 C = 6571.791087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.414 5.414 3 C -0.354 4.354 4 H 0.105 0.895 5 C 0.079 3.921 6 N -0.808 5.808 7 Si 0.885 3.115 8 H -0.271 1.271 9 H -0.285 1.285 10 H -0.268 1.268 11 C 0.500 3.500 12 O -0.598 6.598 13 C -0.001 4.001 14 C -0.146 4.146 15 C -0.125 4.125 16 C 0.275 3.725 17 N -0.270 5.270 18 N -0.059 5.059 19 N -0.239 5.239 20 H 0.470 0.530 21 N -0.317 5.317 22 C 0.044 3.956 23 N -0.407 5.407 24 C 0.076 3.924 25 H 0.043 0.957 26 H 0.139 0.861 27 H 0.041 0.959 28 H 0.277 0.723 29 H 0.176 0.824 30 H 0.170 0.830 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 -14.925 -1.399 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.130 5.130 3 C -0.479 4.479 4 H 0.122 0.878 5 C -0.132 4.132 6 N -0.440 5.440 7 Si 0.709 3.291 8 H -0.196 1.196 9 H -0.211 1.211 10 H -0.193 1.193 11 C 0.290 3.710 12 O -0.487 6.487 13 C -0.114 4.114 14 C -0.171 4.171 15 C -0.136 4.136 16 C -0.004 4.004 17 N -0.143 5.143 18 N -0.054 5.054 19 N -0.084 5.084 20 H 0.323 0.677 21 N -0.169 5.169 22 C -0.097 4.097 23 N -0.079 5.079 24 C -0.065 4.065 25 H 0.062 0.938 26 H 0.157 0.843 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.193 0.807 30 H 0.187 0.813 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.572 -14.742 -1.349 15.494 hybrid contribution 0.376 -0.313 -0.675 0.834 sum -4.197 -15.056 -2.025 15.760 Atomic orbital electron populations 1.23290 0.81976 1.08269 0.98055 1.43149 1.05277 1.04211 1.60336 1.19120 1.05146 0.87016 1.36632 0.87771 1.25360 0.95208 0.96794 0.95851 1.69869 1.17004 1.23240 1.33914 0.86668 0.81573 0.78256 0.82582 1.19638 1.21115 1.19329 1.16576 0.86475 0.81881 0.86071 1.90605 1.13424 1.86810 1.57816 1.20650 0.91916 0.86527 1.12280 1.22468 0.94507 0.95222 1.04939 1.16372 0.85615 0.93670 1.17922 1.22950 0.94077 0.85072 0.98281 1.76131 0.97030 1.22771 1.18366 1.78877 1.23197 0.88681 1.14681 1.47623 1.02961 1.11163 1.46621 0.67684 1.74904 0.97140 1.20248 1.24604 1.21571 0.86355 0.94832 1.06895 1.43609 1.06926 1.05745 1.51650 1.22170 0.77453 1.03012 1.03852 0.93840 0.84344 0.94093 0.91170 0.80716 0.81277 0.90547 0.87986 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 8.15 59.85 0.49 1.10 16 2 N -0.41 -10.69 3.01 -123.72 -0.37 -11.07 16 3 C -0.35 -9.74 8.93 -15.02 -0.13 -9.87 16 4 H 0.10 3.03 7.75 -52.49 -0.41 2.62 16 5 C 0.08 2.03 5.16 -17.46 -0.09 1.94 16 6 N -0.81 -20.24 10.76 55.50 0.60 -19.65 16 7 Si 0.89 19.85 29.69 -169.99 -5.05 14.81 16 8 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 9 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 C 0.50 12.51 7.57 -12.89 -0.10 12.42 16 12 O -0.60 -16.17 14.70 5.15 0.08 -16.10 16 13 C 0.00 -0.01 6.81 -82.03 -0.56 -0.57 16 14 C -0.15 -2.81 8.78 -38.79 -0.34 -3.15 16 15 C -0.12 -2.13 6.10 -105.31 -0.64 -2.77 16 16 C 0.28 4.40 8.17 -156.30 -1.28 3.13 16 17 N -0.27 -4.46 12.54 32.16 0.40 -4.06 16 18 N -0.06 -0.80 13.47 60.35 0.81 0.02 16 19 N -0.24 -2.47 7.90 60.35 0.48 -1.99 16 20 H 0.47 2.33 8.96 -340.38 -3.05 -0.72 16 21 N -0.32 -4.17 12.39 32.18 0.40 -3.77 16 22 C 0.04 0.67 11.28 -16.82 -0.19 0.48 16 23 N -0.41 -7.03 3.14 -120.14 -0.38 -7.40 16 24 C 0.08 1.08 10.29 59.85 0.62 1.70 16 25 H 0.04 0.91 6.14 -51.93 -0.32 0.59 16 26 H 0.14 3.37 4.67 -51.93 -0.24 3.12 16 27 H 0.04 0.88 6.81 -51.93 -0.35 0.52 16 28 H 0.28 6.43 8.31 -40.82 -0.34 6.09 16 29 H 0.18 3.37 4.08 -52.49 -0.21 3.16 16 30 H 0.17 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.69 6.87 -51.93 -0.36 1.33 16 33 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -32.26 288.05 -6.26 -38.52 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.35 Total: 1.97 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.23 Total: 4.38 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 1.94 Total: -47.92 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.08 Total: -16.10 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.05 Total: 14.81 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.26 -6.26 -38.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821592532.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.829 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds