Wall clock time and date at job start Mon Mar 30 2020 01:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36864 * 120.00289 * 2 1 4 4 H 1.08002 * 119.99746 * 147.76580 * 3 2 1 5 5 C 1.39004 * 120.00152 * 327.76448 * 3 2 1 6 6 N 1.31391 * 120.00055 * 49.32671 * 5 3 2 7 7 Si 1.86804 * 120.00060 * 229.32314 * 5 3 2 8 8 H 1.48499 * 109.47033 * 60.00412 * 7 5 3 9 9 H 1.48509 * 109.46920 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47151 * 299.99998 * 7 5 3 11 11 C 1.34776 * 119.99309 * 180.02562 * 2 1 3 12 12 O 1.21742 * 119.99622 * 185.29302 * 11 2 1 13 13 C 1.46592 * 120.00521 * 5.28772 * 11 2 1 14 14 C 1.37778 * 126.11663 * 351.69000 * 13 11 2 15 15 C 1.40783 * 106.89818 * 179.97438 * 14 13 11 16 16 C 1.48496 * 126.25117 * 179.97438 * 15 14 13 17 17 N 1.34039 * 126.67229 * 359.68784 * 16 15 14 18 18 N 1.28989 * 107.27175 * 179.83560 * 17 16 15 19 19 N 1.28728 * 108.94010 * 0.42936 * 18 17 16 20 20 H 0.96993 * 125.34479 * 179.74360 * 19 18 17 21 21 N 1.28876 * 109.31505 * 359.72842 * 19 18 17 22 22 C 1.36578 * 107.50167 * 359.74062 * 15 14 13 23 23 N 1.34850 * 108.82836 * 0.42642 * 22 15 14 24 24 C 1.46503 * 125.49392 * 179.83622 * 23 22 15 25 25 H 1.08993 * 109.47439 * 235.75177 * 1 2 3 26 26 H 1.09002 * 109.46520 * 355.74936 * 1 2 3 27 27 H 1.09000 * 109.47318 * 115.74416 * 1 2 3 28 28 H 0.97000 * 120.00355 * 180.02562 * 6 5 3 29 29 H 1.08002 * 126.55201 * 359.97408 * 14 13 11 30 30 H 1.07997 * 125.58051 * 180.27986 * 22 15 14 31 31 H 1.09001 * 109.46906 * 263.43890 * 24 23 22 32 32 H 1.08999 * 109.47329 * 143.44220 * 24 23 22 33 33 H 1.09001 * 109.47276 * 23.43703 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1852 0.0000 4 1 3.1046 1.2572 0.4989 5 6 1.6152 2.2963 -0.6421 6 7 0.3713 2.6523 -0.4134 7 14 2.6658 3.2835 -1.8301 8 1 3.1121 2.4066 -2.9424 9 1 1.8679 4.4098 -2.3781 10 1 3.8521 3.8184 -1.1149 11 6 2.1388 -1.1673 -0.0005 12 8 3.3523 -1.1696 0.0967 13 6 1.4105 -2.4340 -0.1181 14 6 0.0424 -2.5914 -0.0735 15 6 -0.2165 -3.9667 -0.2264 16 6 -1.5537 -4.6122 -0.2413 17 7 -2.7391 -4.0011 -0.1066 18 7 -3.6498 -4.9117 -0.1791 19 7 -3.0841 -6.0564 -0.3430 20 1 -3.5472 -6.9048 -0.4234 21 7 -1.8057 -5.8981 -0.3838 22 6 0.9867 -4.5984 -0.3638 23 7 1.9711 -3.6795 -0.2934 24 6 3.4055 -3.9603 -0.3936 25 1 -0.3634 -0.5783 0.8494 26 1 -0.3632 1.0249 0.0762 27 1 -0.3634 -0.4464 -0.9257 28 1 -0.0017 3.4274 -0.8617 29 1 -0.6912 -1.8091 0.0542 30 1 1.1266 -5.6601 -0.5034 31 1 3.8304 -4.0424 0.6068 32 1 3.8976 -3.1503 -0.9320 33 1 3.5558 -4.8972 -0.9301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821592532.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:49 Heat of formation + Delta-G solvation = 153.259433 kcal Electronic energy + Delta-G solvation = -20859.584627 eV Core-core repulsion = 17539.250088 eV Total energy + Delta-G solvation = -3320.334539 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.26914 -42.40234 -39.75583 -36.79677 -35.37495 -34.69161 -34.16198 -32.89257 -30.54238 -28.42195 -27.52005 -26.70206 -25.38417 -24.53674 -22.95144 -21.57335 -20.20139 -19.68166 -19.16259 -17.97142 -17.85602 -17.13453 -16.64536 -16.23747 -16.05726 -15.53534 -15.43539 -14.96523 -14.71314 -14.25185 -13.85265 -13.56566 -13.48668 -13.37192 -13.25127 -13.18078 -12.97659 -12.45047 -12.24573 -12.11914 -12.01675 -11.81919 -11.65621 -10.64250 -10.46021 -9.78131 -9.53726 -9.11406 -8.66482 -5.85423 0.16136 0.63265 0.72807 1.33240 1.45184 1.54537 1.57599 1.81132 2.15439 2.25084 2.44711 2.84614 2.93829 3.23387 3.33980 3.99584 4.10800 4.14352 4.41868 4.47304 4.48718 4.60799 4.69951 4.81606 4.86179 5.01977 5.15730 5.22393 5.63447 5.69822 5.78177 5.90775 6.18372 6.29451 6.53983 7.11258 7.30953 7.39371 8.04647 8.34403 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.022357 B = 0.005048 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.080157 B = 5545.598058 C = 6571.791087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.431 5.431 3 C -0.402 4.402 4 H 0.072 0.928 5 C 0.057 3.943 6 N -0.817 5.817 7 Si 0.947 3.053 8 H -0.282 1.282 9 H -0.263 1.263 10 H -0.268 1.268 11 C 0.493 3.507 12 O -0.632 6.632 13 C -0.044 4.044 14 C -0.137 4.137 15 C -0.141 4.141 16 C 0.260 3.740 17 N -0.306 5.306 18 N -0.062 5.062 19 N -0.203 5.203 20 H 0.493 0.507 21 N -0.301 5.301 22 C 0.082 3.918 23 N -0.408 5.408 24 C 0.073 3.927 25 H 0.056 0.944 26 H 0.125 0.875 27 H 0.049 0.951 28 H 0.288 0.712 29 H 0.167 0.833 30 H 0.218 0.782 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.687 -17.403 -2.404 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.148 5.148 3 C -0.527 4.527 4 H 0.090 0.910 5 C -0.155 4.155 6 N -0.448 5.448 7 Si 0.770 3.230 8 H -0.209 1.209 9 H -0.187 1.187 10 H -0.193 1.193 11 C 0.285 3.715 12 O -0.523 6.523 13 C -0.156 4.156 14 C -0.164 4.164 15 C -0.151 4.151 16 C -0.020 4.020 17 N -0.178 5.178 18 N -0.057 5.057 19 N -0.054 5.054 20 H 0.352 0.648 21 N -0.154 5.154 22 C -0.060 4.060 23 N -0.079 5.079 24 C -0.067 4.067 25 H 0.074 0.926 26 H 0.143 0.857 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.184 0.816 30 H 0.235 0.765 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.594 -17.208 -2.349 18.246 hybrid contribution 0.570 0.250 -0.341 0.710 sum -5.024 -16.957 -2.690 17.890 Atomic orbital electron populations 1.23197 0.80580 1.07589 0.98996 1.43307 1.06226 1.04162 1.61063 1.18928 1.04974 0.88759 1.40046 0.90976 1.25907 0.96517 0.97300 0.95798 1.69856 1.17686 1.23662 1.33600 0.85744 0.80193 0.77277 0.79794 1.20858 1.18741 1.19305 1.17184 0.86442 0.83147 0.84755 1.90551 1.14972 1.87682 1.59095 1.20070 0.92408 0.86508 1.16641 1.22407 0.93661 0.96629 1.03709 1.16440 0.87136 0.92739 1.18784 1.22775 0.93581 0.85905 0.99742 1.76121 0.97656 1.24206 1.19858 1.78824 1.22687 0.89160 1.15033 1.47700 1.02279 1.11650 1.43748 0.64827 1.74843 0.98053 1.18730 1.23778 1.22272 0.84866 0.96173 1.02648 1.43834 1.08386 1.04745 1.50961 1.22340 0.75648 1.04249 1.04423 0.92568 0.85731 0.93285 0.90055 0.81558 0.76522 0.90250 0.91060 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.82 8.15 127.77 1.04 2.86 16 2 N -0.43 -23.37 3.01 -663.54 -2.00 -25.37 16 3 C -0.40 -23.28 8.93 84.09 0.75 -22.53 16 4 H 0.07 4.51 7.75 -2.91 -0.02 4.49 16 5 C 0.06 2.96 5.16 84.94 0.44 3.40 16 6 N -0.82 -41.32 10.76 21.67 0.23 -41.08 16 7 Si 0.95 41.47 29.69 68.60 2.04 43.51 16 8 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 9 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 C 0.49 25.82 7.57 86.42 0.65 26.48 16 12 O -0.63 -36.09 14.70 -4.48 -0.07 -36.15 16 13 C -0.04 -1.85 6.81 40.29 0.27 -1.58 16 14 C -0.14 -5.29 8.78 22.78 0.20 -5.09 16 15 C -0.14 -4.52 6.10 -20.31 -0.12 -4.64 16 16 C 0.26 7.66 8.17 137.39 1.12 8.79 16 17 N -0.31 -9.64 12.54 -52.16 -0.65 -10.30 16 18 N -0.06 -1.53 13.47 37.02 0.50 -1.03 16 19 N -0.20 -3.49 7.90 37.02 0.29 -3.19 16 20 H 0.49 2.90 8.96 -347.55 -3.12 -0.22 16 21 N -0.30 -6.80 12.39 -52.11 -0.65 -7.44 16 22 C 0.08 2.20 11.28 83.84 0.95 3.14 16 23 N -0.41 -13.42 3.14 -534.02 -1.68 -15.10 16 24 C 0.07 1.97 10.29 127.77 1.31 3.28 16 25 H 0.06 2.44 6.14 -2.39 -0.01 2.42 16 26 H 0.13 6.24 4.67 -2.39 -0.01 6.23 16 27 H 0.05 2.17 6.81 -2.39 -0.02 2.15 16 28 H 0.29 13.21 8.31 -92.71 -0.77 12.44 16 29 H 0.17 6.53 4.08 -2.91 -0.01 6.52 16 30 H 0.22 3.66 8.06 -2.91 -0.02 3.64 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.39 6.87 -2.39 -0.02 2.38 16 33 H 0.13 2.06 8.11 -2.39 -0.02 2.04 16 Total: -1.00 -73.53 288.05 2.72 -70.81 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -1.92 Total: 11.23 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 6.62 Total: 14.11 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -3.95 Total: -103.51 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.07 Total: -36.15 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.04 Total: 43.51 kcal Total: -73.53 2.72 -70.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821592532.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.067 kcal (2) G-P(sol) polarization free energy of solvation -73.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds