Wall clock time and date at job start Mon Mar 30 2020 01:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47235 * 2 1 4 4 C 1.46499 * 120.00331 * 72.56136 * 3 2 1 5 5 C 1.50693 * 109.47043 * 89.99780 * 4 3 2 6 6 H 1.08005 * 120.00226 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00051 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99856 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00001 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47391 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46733 * 120.00544 * 9 7 5 12 12 H 1.48498 * 109.47168 * 240.00232 * 9 7 5 13 13 C 1.34777 * 119.99753 * 252.56513 * 3 2 1 14 14 O 1.21575 * 119.99679 * 181.74064 * 13 3 2 15 15 C 1.47717 * 120.00534 * 1.74170 * 13 3 2 16 16 C 1.39338 * 120.08879 * 26.46493 * 15 13 3 17 17 C 1.39336 * 119.72407 * 179.75030 * 16 15 13 18 18 C 1.43201 * 120.04631 * 180.25371 * 17 16 15 19 19 N 5.09822 * 73.86953 * 238.39784 * 2 1 3 20 20 C 1.39864 * 119.90834 * 0.50305 * 17 16 15 21 21 C 1.37861 * 120.18948 * 359.76959 * 20 17 16 22 22 C 1.38483 * 120.27720 * 359.97438 * 21 20 17 23 23 F 1.35098 * 119.95931 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47466 * 60.00104 * 1 2 3 25 25 H 1.09004 * 109.46945 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46960 * 300.00050 * 1 2 3 27 27 H 1.09003 * 109.47427 * 239.99857 * 2 1 3 28 28 H 1.09004 * 109.47466 * 119.99895 * 2 1 3 29 29 H 1.08995 * 109.47178 * 210.00820 * 4 3 2 30 30 H 1.09006 * 109.46607 * 330.00393 * 4 3 2 31 31 H 0.97003 * 120.00268 * 179.97438 * 8 7 5 32 32 H 1.07998 * 120.13935 * 359.97438 * 16 15 13 33 33 H 1.07997 * 119.90732 * 179.74660 * 20 17 16 34 34 H 1.07999 * 119.85965 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9040 2.1986 1.2104 5 6 3.1428 2.0270 2.0512 6 1 3.9361 1.3746 1.7172 7 6 3.2639 2.7036 3.2464 8 7 2.2982 3.4984 3.6529 9 14 4.7998 2.4914 4.2883 10 1 5.7296 1.5505 3.6136 11 1 5.4664 3.8071 4.4609 12 1 4.4244 1.9485 5.6185 13 6 2.5726 1.8999 -1.1136 14 8 3.0066 3.0355 -1.1042 15 6 2.6530 1.0887 -2.3455 16 6 1.7316 0.0682 -2.5712 17 6 1.8112 -0.6889 -3.7382 18 6 0.8645 -1.7358 -3.9797 19 7 0.1135 -2.5664 -4.1712 20 6 2.8202 -0.4282 -4.6711 21 6 3.7333 0.5787 -4.4414 22 6 3.6582 1.3394 -3.2866 23 9 4.5568 2.3242 -3.0679 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7961 3.2469 0.9320 30 1 1.0308 1.8825 1.7811 31 1 2.3832 3.9742 4.4939 32 1 0.9567 -0.1329 -1.8463 33 1 2.8844 -1.0177 -5.5737 34 1 4.5105 0.7751 -5.1651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823198946.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:56 Heat of formation + Delta-G solvation = 5.520893 kcal Electronic energy + Delta-G solvation = -20875.113933 eV Core-core repulsion = 17496.160258 eV Total energy + Delta-G solvation = -3378.953675 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.91855 -40.34962 -38.39638 -36.49625 -35.71617 -33.07629 -31.63896 -31.23937 -30.23321 -27.33530 -24.38785 -24.01685 -23.14157 -22.47318 -20.10345 -18.16972 -17.63396 -16.91243 -16.59887 -16.36776 -15.69573 -15.35407 -14.88088 -14.38081 -14.26064 -14.13869 -14.04180 -13.83094 -13.30886 -12.87871 -12.69355 -12.62034 -12.47312 -12.17181 -12.01254 -11.77514 -11.39563 -11.24396 -10.92200 -10.75469 -10.62922 -10.17564 -9.68306 -9.39768 -9.07827 -8.95794 -8.46862 -7.80077 -6.08062 -4.12624 0.31145 0.65820 2.39889 2.43422 3.25767 3.28597 3.36533 3.39865 3.52662 3.55752 3.82024 3.98186 4.35374 4.41212 4.48701 4.76650 4.89268 5.13510 5.26823 5.33210 5.42513 5.44320 5.56685 5.65688 5.73755 5.78948 5.88540 6.15556 6.36640 6.40818 6.95897 7.21783 7.34977 7.41904 7.87710 8.17392 8.22810 8.78063 8.94762 9.52493 11.00209 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.005365 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.261084 B = 5217.481096 C = 6038.158244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 N -0.584 5.584 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.544 3.456 14 O -0.519 6.519 15 C -0.158 4.158 16 C -0.040 4.040 17 C -0.057 4.057 18 C 0.259 3.741 19 N -0.415 5.415 20 C -0.026 4.026 21 C -0.166 4.166 22 C 0.185 3.815 23 F -0.107 7.107 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.175 0.825 33 H 0.145 0.855 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -9.086 -14.868 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.050 4.050 3 N -0.315 5.315 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.210 1.210 13 C 0.329 3.671 14 O -0.396 6.396 15 C -0.162 4.162 16 C -0.060 4.060 17 C -0.060 4.060 18 C -0.056 4.056 19 N -0.090 5.090 20 C -0.047 4.047 21 C -0.185 4.185 22 C 0.163 3.837 23 F -0.085 7.085 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.192 0.808 33 H 0.163 0.837 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.533 -9.588 -14.943 17.821 hybrid contribution 1.293 0.377 0.839 1.587 sum -0.240 -9.211 -14.104 16.848 Atomic orbital electron populations 1.22280 0.96152 1.02078 1.03201 1.22274 0.94154 0.84764 1.03841 1.48160 1.57500 1.12932 1.12870 1.19358 0.97335 0.91228 0.79326 1.21440 1.03411 1.27428 1.04290 0.92317 1.24922 0.96642 0.94851 0.97597 1.69935 1.32429 1.28781 1.22159 0.86437 0.83011 0.78090 0.79867 1.19772 1.20829 1.20963 1.17797 0.80086 0.86633 0.82573 1.90832 1.46676 1.18169 1.83876 1.20368 0.97989 0.99934 0.97956 1.22359 0.98214 0.90684 0.94787 1.15882 0.96305 0.96484 0.97373 1.25470 0.93188 0.92962 0.93977 1.81274 1.09688 1.10509 1.07516 1.21101 0.91006 0.94941 0.97659 1.21036 1.02462 0.97530 0.97472 1.17973 0.86723 0.85807 0.93162 1.91636 1.64229 1.58271 1.94383 0.92463 0.91632 0.90666 0.89313 0.89956 0.93584 0.94479 0.92716 0.80803 0.83739 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.11 37.15 0.34 -1.94 16 2 C 0.07 1.10 5.62 -4.04 -0.02 1.08 16 3 N -0.58 -11.81 2.51 -176.23 -0.44 -12.25 16 4 C 0.25 6.19 5.08 -5.20 -0.03 6.17 16 5 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.54 11.09 7.43 -12.39 -0.09 11.00 16 14 O -0.52 -12.92 15.37 5.30 0.08 -12.84 16 15 C -0.16 -2.36 5.57 -104.97 -0.58 -2.95 16 16 C -0.04 -0.46 7.16 -38.76 -0.28 -0.74 16 17 C -0.06 -0.53 5.73 -106.95 -0.61 -1.15 16 18 C 0.26 2.68 15.32 -22.47 -0.34 2.34 16 19 N -0.41 -5.14 18.54 41.84 0.78 -4.36 16 20 C -0.03 -0.20 9.74 -39.11 -0.38 -0.58 16 21 C -0.17 -1.47 10.00 -39.63 -0.40 -1.86 16 22 C 0.18 2.50 7.25 -38.84 -0.28 2.22 16 23 F -0.11 -1.77 15.88 2.25 0.04 -1.73 16 24 H 0.06 0.68 7.10 -51.93 -0.37 0.31 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.08 7.27 -51.93 -0.38 0.71 16 27 H 0.09 1.11 3.86 -53.36 -0.21 0.90 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.05 1.31 7.44 -51.93 -0.39 0.93 16 30 H 0.04 0.93 7.16 -51.93 -0.37 0.56 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.18 1.93 2.82 -52.49 -0.15 1.79 16 33 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -33.24 303.46 -5.46 -38.70 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -3.09 Total: -3.60 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.10 Total: 0.29 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 1.07 Total: -41.97 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.24 -5.46 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823198946.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.218 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds