Wall clock time and date at job start Mon Mar 30 2020 01:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47235 * 2 1 4 4 C 1.46499 * 120.00331 * 72.56136 * 3 2 1 5 5 C 1.50693 * 109.47043 * 89.99780 * 4 3 2 6 6 H 1.08005 * 120.00226 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00051 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99856 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00001 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47391 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46733 * 120.00544 * 9 7 5 12 12 H 1.48498 * 109.47168 * 240.00232 * 9 7 5 13 13 C 1.34777 * 119.99753 * 252.56513 * 3 2 1 14 14 O 1.21575 * 119.99679 * 181.74064 * 13 3 2 15 15 C 1.47717 * 120.00534 * 1.74170 * 13 3 2 16 16 C 1.39338 * 120.08879 * 26.46493 * 15 13 3 17 17 C 1.39336 * 119.72407 * 179.75030 * 16 15 13 18 18 C 1.43201 * 120.04631 * 180.25371 * 17 16 15 19 19 N 5.09822 * 73.86953 * 238.39784 * 2 1 3 20 20 C 1.39864 * 119.90834 * 0.50305 * 17 16 15 21 21 C 1.37861 * 120.18948 * 359.76959 * 20 17 16 22 22 C 1.38483 * 120.27720 * 359.97438 * 21 20 17 23 23 F 1.35098 * 119.95931 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47466 * 60.00104 * 1 2 3 25 25 H 1.09004 * 109.46945 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46960 * 300.00050 * 1 2 3 27 27 H 1.09003 * 109.47427 * 239.99857 * 2 1 3 28 28 H 1.09004 * 109.47466 * 119.99895 * 2 1 3 29 29 H 1.08995 * 109.47178 * 210.00820 * 4 3 2 30 30 H 1.09006 * 109.46607 * 330.00393 * 4 3 2 31 31 H 0.97003 * 120.00268 * 179.97438 * 8 7 5 32 32 H 1.07998 * 120.13935 * 359.97438 * 16 15 13 33 33 H 1.07997 * 119.90732 * 179.74660 * 20 17 16 34 34 H 1.07999 * 119.85965 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9040 2.1986 1.2104 5 6 3.1428 2.0270 2.0512 6 1 3.9361 1.3746 1.7172 7 6 3.2639 2.7036 3.2464 8 7 2.2982 3.4984 3.6529 9 14 4.7998 2.4914 4.2883 10 1 5.7296 1.5505 3.6136 11 1 5.4664 3.8071 4.4609 12 1 4.4244 1.9485 5.6185 13 6 2.5726 1.8999 -1.1136 14 8 3.0066 3.0355 -1.1042 15 6 2.6530 1.0887 -2.3455 16 6 1.7316 0.0682 -2.5712 17 6 1.8112 -0.6889 -3.7382 18 6 0.8645 -1.7358 -3.9797 19 7 0.1135 -2.5664 -4.1712 20 6 2.8202 -0.4282 -4.6711 21 6 3.7333 0.5787 -4.4414 22 6 3.6582 1.3394 -3.2866 23 9 4.5568 2.3242 -3.0679 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7961 3.2469 0.9320 30 1 1.0308 1.8825 1.7811 31 1 2.3832 3.9742 4.4939 32 1 0.9567 -0.1329 -1.8463 33 1 2.8844 -1.0177 -5.5737 34 1 4.5105 0.7751 -5.1651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823198946.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:55 Heat of formation + Delta-G solvation = -15.582827 kcal Electronic energy + Delta-G solvation = -20876.029059 eV Core-core repulsion = 17496.160258 eV Total energy + Delta-G solvation = -3379.868801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.02954 -41.57522 -39.63363 -37.40407 -37.28326 -35.04790 -32.89844 -32.22685 -31.50331 -29.20967 -25.81884 -25.04303 -24.56954 -23.73410 -21.38519 -19.35888 -18.78072 -18.53503 -18.06621 -17.68787 -16.99248 -16.76568 -16.23603 -15.98517 -15.76002 -15.02143 -15.00527 -14.75360 -14.73701 -14.35257 -13.97239 -13.64792 -13.55722 -13.45793 -13.32155 -13.08769 -13.06681 -12.75453 -12.58169 -12.29121 -12.22087 -11.87213 -11.69879 -10.82835 -10.65156 -10.19973 -9.90567 -9.52330 -8.23769 -6.37826 -0.58618 -0.24264 1.35933 1.38612 1.48581 1.51034 1.57384 1.99707 2.21285 2.39811 2.64315 2.72916 3.03450 3.06398 3.35521 3.56738 3.89136 3.95355 4.08250 4.24871 4.45038 4.49225 4.61217 4.76014 4.85796 4.90500 4.92311 5.01280 5.03806 5.19599 5.34936 5.52277 5.53723 5.78402 6.04166 6.40791 6.60339 6.71252 7.20908 7.36441 8.83793 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.005365 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.261084 B = 5217.481096 C = 6038.158244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.067 3.933 3 N -0.590 5.590 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.535 3.465 14 O -0.582 6.582 15 C -0.182 4.182 16 C -0.034 4.034 17 C -0.043 4.043 18 C 0.284 3.716 19 N -0.444 5.444 20 C 0.007 3.993 21 C -0.142 4.142 22 C 0.160 3.840 23 F -0.135 7.135 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.051 0.949 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.000 1.000 30 H 0.032 0.968 31 H 0.267 0.733 32 H 0.177 0.823 33 H 0.194 0.806 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -11.924 -17.183 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.054 4.054 3 N -0.320 5.320 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.324 3.676 14 O -0.463 6.463 15 C -0.187 4.187 16 C -0.054 4.054 17 C -0.047 4.047 18 C -0.031 4.031 19 N -0.120 5.120 20 C -0.014 4.014 21 C -0.160 4.160 22 C 0.139 3.861 23 F -0.113 7.113 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.070 0.930 27 H 0.139 0.861 28 H 0.092 0.908 29 H 0.018 0.982 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.193 0.807 33 H 0.211 0.789 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.963 -12.483 -17.271 21.332 hybrid contribution 1.064 1.211 1.440 2.162 sum 0.101 -11.272 -15.831 19.434 Atomic orbital electron populations 1.22235 0.94147 1.04142 1.02533 1.22640 0.95808 0.81911 1.05087 1.48139 1.57787 1.14516 1.11540 1.18789 0.96394 0.89735 0.81021 1.21702 1.04003 1.27478 1.04981 0.93051 1.25819 0.99847 0.94374 0.98895 1.70046 1.34342 1.29496 1.22767 0.85383 0.78996 0.78019 0.78515 1.19237 1.20752 1.19300 1.18656 0.78452 0.86473 0.84067 1.90774 1.49296 1.21017 1.85244 1.19863 1.00959 1.01479 0.96353 1.22170 0.97293 0.89990 0.95963 1.15813 0.96508 0.95525 0.96814 1.25296 0.92490 0.92311 0.93041 1.81332 1.10516 1.11565 1.08542 1.21635 0.88323 0.93412 0.97982 1.21397 1.03022 0.95916 0.95667 1.18477 0.86476 0.86434 0.94734 1.91569 1.65171 1.59759 1.94771 0.91530 0.88064 0.93008 0.86074 0.90798 0.98200 0.94981 0.92359 0.80667 0.78932 0.79416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 9.11 71.98 0.66 -3.61 16 2 C 0.07 2.01 5.62 86.38 0.49 2.50 16 3 N -0.59 -25.14 2.51 -829.72 -2.08 -27.23 16 4 C 0.26 14.09 5.08 85.63 0.43 14.53 16 5 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.57 5.46 84.66 0.46 1.03 16 8 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 9 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.53 23.04 7.43 86.75 0.64 23.68 16 14 O -0.58 -31.33 15.37 -3.95 -0.06 -31.39 16 15 C -0.18 -5.40 5.57 -20.09 -0.11 -5.51 16 16 C -0.03 -0.70 7.16 22.80 0.16 -0.54 16 17 C -0.04 -0.62 5.73 -21.38 -0.12 -0.74 16 18 C 0.28 4.65 15.32 88.33 1.35 6.01 16 19 N -0.44 -9.44 18.54 19.00 0.35 -9.08 16 20 C 0.01 0.06 9.74 22.57 0.22 0.28 16 21 C -0.14 -1.88 10.00 22.24 0.22 -1.65 16 22 C 0.16 4.14 7.25 22.75 0.16 4.31 16 23 F -0.13 -4.55 15.88 44.97 0.71 -3.84 16 24 H 0.07 1.52 7.10 -2.39 -0.02 1.50 16 25 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.05 1.53 7.27 -2.39 -0.02 1.51 16 27 H 0.12 2.86 3.86 -3.73 -0.01 2.84 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.00 -0.01 7.44 -2.39 -0.02 -0.02 16 30 H 0.03 1.73 7.16 -2.38 -0.02 1.71 16 31 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.18 3.53 2.82 -2.91 -0.01 3.53 16 33 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 34 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -79.52 303.46 7.20 -72.32 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: 1.15 Total: -1.22 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 4.81 Total: 8.98 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -1.44 Total: -92.06 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.06 Total: -31.39 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.71 Total: -3.84 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -79.52 7.20 -72.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823198946.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.741 kcal (2) G-P(sol) polarization free energy of solvation -79.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds