Wall clock time and date at job start Mon Mar 30 2020 01:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 C 1.50700 * 109.47460 * 120.00542 * 2 1 3 5 5 H 1.08007 * 120.00019 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99855 * 299.99893 * 4 2 1 7 7 N 1.31515 * 119.99924 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99947 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47049 * 89.99866 * 8 6 4 10 10 H 1.48501 * 109.46931 * 209.99668 * 8 6 4 11 11 H 1.48496 * 109.47148 * 329.99514 * 8 6 4 12 12 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 13 13 C 1.34777 * 119.99854 * 84.99752 * 12 2 1 14 14 O 1.21713 * 120.00030 * 0.02562 * 13 12 2 15 15 C 1.46610 * 120.00030 * 180.27581 * 13 12 2 16 16 C 1.38029 * 126.00730 * 179.41905 * 15 13 12 17 17 C 1.39398 * 107.42740 * 179.84865 * 16 15 13 18 18 C 1.37757 * 107.65063 * 0.41527 * 17 16 15 19 19 C 1.47917 * 125.81685 * 179.76729 * 18 17 16 20 20 N 1.34205 * 126.70044 * 179.66810 * 19 18 17 21 21 N 1.28987 * 107.25022 * 179.83153 * 20 19 18 22 22 N 1.28721 * 108.99257 * 0.43006 * 21 20 19 23 23 H 0.97005 * 125.31261 * 179.74223 * 22 21 20 24 24 N 1.28868 * 109.36488 * 359.72719 * 22 21 20 25 25 N 1.36388 * 108.36172 * 359.74164 * 18 17 16 26 26 H 0.96994 * 125.71107 * 179.97438 * 25 18 17 27 27 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 28 28 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 30 30 H 0.96999 * 119.99893 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00410 * 265.00478 * 12 2 1 32 32 H 1.08001 * 126.29026 * 359.97438 * 16 15 13 33 33 H 1.07998 * 126.17262 * 180.14086 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3215 -1.1206 4.0078 9 1 3.6298 -0.5463 4.4122 10 1 1.3433 -0.9495 5.1120 11 1 2.4858 -2.5665 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8579 1.1629 -2.4117 15 6 2.6298 -0.7107 -3.5558 16 6 2.7972 -0.1490 -4.8054 17 6 3.2755 -1.1482 -5.6516 18 6 3.3844 -2.3052 -4.9120 19 6 3.8500 -3.6151 -5.4174 20 7 3.9688 -4.7507 -4.7121 21 7 4.4016 -5.6588 -5.5194 22 7 4.5647 -5.1392 -6.6858 23 1 4.8854 -5.6114 -7.4701 24 7 4.2350 -3.8940 -6.6487 25 7 2.9904 -2.0369 -3.6341 26 1 2.9676 -2.6740 -2.9031 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.7090 1.1611 3.4845 31 1 2.2489 -1.6318 -1.1528 32 1 2.5966 0.8768 -5.0773 33 1 3.5131 -1.0365 -6.6992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824385718.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:30 Heat of formation + Delta-G solvation = 127.186935 kcal Electronic energy + Delta-G solvation = -20120.660140 eV Core-core repulsion = 16799.195013 eV Total energy + Delta-G solvation = -3321.465127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.70470 -41.15902 -38.45899 -34.90403 -34.60700 -33.61710 -32.52388 -31.12786 -29.79327 -28.38486 -25.30453 -24.90730 -24.59299 -22.36316 -20.94208 -20.07024 -19.74342 -19.56892 -18.49776 -17.41872 -16.44150 -15.67091 -15.21220 -14.83160 -14.54324 -14.25651 -13.88755 -13.58119 -13.34928 -12.92711 -12.61868 -12.44352 -12.25251 -11.75199 -11.65985 -11.43299 -11.18337 -11.10827 -10.99728 -10.79467 -10.35538 -10.26878 -9.38216 -9.10332 -9.08438 -8.59805 -8.21924 -7.91658 -6.15602 -4.25407 0.66268 1.09086 1.88983 2.08450 2.81776 2.91884 3.23617 3.30382 3.32069 3.55374 3.87048 3.94373 4.05760 4.34720 4.98703 5.16979 5.18145 5.24864 5.28619 5.45841 5.96845 6.09645 6.15556 6.59373 6.77802 6.83102 6.91564 7.09504 7.20889 7.33574 7.50782 7.64633 7.85615 7.86220 8.09936 8.52781 8.70775 8.95121 9.41914 10.90382 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.003915 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.001218 B = 7150.432458 C = 8176.454390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.704 5.704 13 C 0.570 3.430 14 O -0.534 6.534 15 C 0.006 3.994 16 C -0.126 4.126 17 C -0.139 4.139 18 C 0.085 3.915 19 C 0.250 3.750 20 N -0.276 5.276 21 N -0.046 5.046 22 N -0.227 5.227 23 H 0.476 0.524 24 N -0.284 5.284 25 N -0.514 5.514 26 H 0.425 0.575 27 H 0.017 0.983 28 H 0.027 0.973 29 H 0.092 0.908 30 H 0.265 0.735 31 H 0.384 0.616 32 H 0.157 0.843 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 -10.382 -17.832 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.351 5.351 13 C 0.354 3.646 14 O -0.412 6.412 15 C -0.112 4.112 16 C -0.152 4.152 17 C -0.167 4.167 18 C -0.033 4.033 19 C -0.029 4.029 20 N -0.150 5.150 21 N -0.041 5.041 22 N -0.073 5.073 23 H 0.331 0.669 24 N -0.136 5.136 25 N -0.111 5.111 26 H 0.264 0.736 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.216 0.784 32 H 0.174 0.826 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.767 -10.144 -17.441 20.985 hybrid contribution 0.545 -1.240 0.671 1.511 sum 6.312 -11.384 -16.771 21.230 Atomic orbital electron populations 1.22091 0.98181 0.99255 1.01145 1.18826 0.91199 0.94088 0.79539 0.92935 1.21192 1.32693 1.13354 0.90285 0.92072 1.24877 0.94711 0.94938 0.99063 1.69897 1.35655 1.22374 1.23996 0.86433 0.78634 0.79843 0.82114 1.20507 1.21021 1.19829 1.46536 1.64711 1.13205 1.10680 1.17061 0.79021 0.86616 0.81871 1.90826 1.51361 1.14639 1.84338 1.21198 1.09349 0.82923 0.97764 1.21233 1.03338 1.00182 0.90422 1.21078 1.05426 0.90292 0.99898 1.16807 1.11425 0.89354 0.85764 1.22506 1.00362 0.93665 0.86385 1.76198 1.16773 0.97602 1.24445 1.78886 1.13401 1.22067 0.89756 1.47736 1.42145 1.05335 1.12118 0.66910 1.74990 1.19295 0.97935 1.21407 1.41953 1.49446 1.10173 1.09514 0.73641 0.96420 0.95414 0.88950 0.92480 0.78431 0.82551 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.63 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -14.04 8.73 -34.44 -0.30 -14.34 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.56 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.70 -14.44 5.06 -56.26 -0.28 -14.72 16 13 C 0.57 11.43 7.75 -12.88 -0.10 11.33 16 14 O -0.53 -12.64 16.54 5.18 0.09 -12.56 16 15 C 0.01 0.10 7.04 -81.95 -0.58 -0.48 16 16 C -0.13 -1.78 10.60 -39.23 -0.42 -2.20 16 17 C -0.14 -1.68 10.79 -39.33 -0.42 -2.11 16 18 C 0.09 1.09 7.12 -82.05 -0.58 0.50 16 19 C 0.25 3.02 8.21 -156.25 -1.28 1.74 16 20 N -0.28 -3.46 12.54 32.08 0.40 -3.06 16 21 N -0.05 -0.47 13.46 60.35 0.81 0.34 16 22 N -0.23 -1.64 7.90 60.35 0.48 -1.16 16 23 H 0.48 0.98 8.96 -340.33 -3.05 -2.07 16 24 N -0.28 -2.82 12.39 32.10 0.40 -2.42 16 25 N -0.51 -6.90 6.03 -5.81 -0.04 -6.94 16 26 H 0.42 5.09 8.16 -40.82 -0.33 4.76 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.38 6.74 7.64 -40.82 -0.31 6.43 16 32 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -32.47 300.33 -7.26 -39.73 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.64 Total: 5.41 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -3.61 Total: -0.68 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 2.40 Total: -51.89 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.47 -7.26 -39.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824385718.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.920 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds