Wall clock time and date at job start Mon Mar 30 2020 01:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47409 * 2 1 4 4 C 1.50700 * 109.47460 * 120.00542 * 2 1 3 5 5 H 1.08007 * 120.00019 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99855 * 299.99893 * 4 2 1 7 7 N 1.31515 * 119.99924 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99947 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47049 * 89.99866 * 8 6 4 10 10 H 1.48501 * 109.46931 * 209.99668 * 8 6 4 11 11 H 1.48496 * 109.47148 * 329.99514 * 8 6 4 12 12 N 1.46504 * 109.47009 * 240.00164 * 2 1 3 13 13 C 1.34777 * 119.99854 * 84.99752 * 12 2 1 14 14 O 1.21713 * 120.00030 * 0.02562 * 13 12 2 15 15 C 1.46610 * 120.00030 * 180.27581 * 13 12 2 16 16 C 1.38029 * 126.00730 * 179.41905 * 15 13 12 17 17 C 1.39398 * 107.42740 * 179.84865 * 16 15 13 18 18 C 1.37757 * 107.65063 * 0.41527 * 17 16 15 19 19 C 1.47917 * 125.81685 * 179.76729 * 18 17 16 20 20 N 1.34205 * 126.70044 * 179.66810 * 19 18 17 21 21 N 1.28987 * 107.25022 * 179.83153 * 20 19 18 22 22 N 1.28721 * 108.99257 * 0.43006 * 21 20 19 23 23 H 0.97005 * 125.31261 * 179.74223 * 22 21 20 24 24 N 1.28868 * 109.36488 * 359.72719 * 22 21 20 25 25 N 1.36388 * 108.36172 * 359.74164 * 18 17 16 26 26 H 0.96994 * 125.71107 * 179.97438 * 25 18 17 27 27 H 1.09001 * 109.47135 * 59.99282 * 1 2 3 28 28 H 1.08999 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46569 * 299.99572 * 1 2 3 30 30 H 0.96999 * 119.99893 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00410 * 265.00478 * 12 2 1 32 32 H 1.08001 * 126.29026 * 359.97438 * 16 15 13 33 33 H 1.07998 * 126.17262 * 180.14086 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5887 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3215 -1.1206 4.0078 9 1 3.6298 -0.5463 4.4122 10 1 1.3433 -0.9495 5.1120 11 1 2.4858 -2.5665 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8579 1.1629 -2.4117 15 6 2.6298 -0.7107 -3.5558 16 6 2.7972 -0.1490 -4.8054 17 6 3.2755 -1.1482 -5.6516 18 6 3.3844 -2.3052 -4.9120 19 6 3.8500 -3.6151 -5.4174 20 7 3.9688 -4.7507 -4.7121 21 7 4.4016 -5.6588 -5.5194 22 7 4.5647 -5.1392 -6.6858 23 1 4.8854 -5.6114 -7.4701 24 7 4.2350 -3.8940 -6.6487 25 7 2.9904 -2.0369 -3.6341 26 1 2.9676 -2.6740 -2.9031 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.7090 1.1611 3.4845 31 1 2.2489 -1.6318 -1.1528 32 1 2.5966 0.8768 -5.0773 33 1 3.5131 -1.0365 -6.6992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824385718.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:30 Heat of formation + Delta-G solvation = 102.012194 kcal Electronic energy + Delta-G solvation = -20121.751798 eV Core-core repulsion = 16799.195013 eV Total energy + Delta-G solvation = -3322.556786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.51254 -42.30201 -40.08305 -36.77477 -35.43257 -34.55682 -34.32588 -32.27517 -31.34959 -29.81120 -27.35312 -25.82475 -25.62479 -23.73471 -22.31695 -21.33024 -21.06481 -20.62209 -19.79504 -18.21325 -18.14886 -17.22638 -16.96868 -16.22767 -15.94582 -15.44622 -15.06975 -14.92620 -14.85279 -14.39476 -13.94346 -13.82098 -13.61927 -13.15540 -12.99071 -12.89660 -12.77084 -12.48332 -12.27882 -12.26910 -12.14843 -12.01150 -11.14656 -11.07088 -10.61174 -10.13141 -9.91687 -9.14829 -8.18495 -6.36152 -0.23372 0.16394 0.94352 1.22228 1.45642 1.45742 1.56474 1.86910 1.92416 2.30297 2.40065 2.52985 2.63631 3.12331 3.18733 3.91538 4.05198 4.22943 4.30978 4.41237 4.74356 4.91336 4.93772 5.07282 5.15989 5.39018 5.48135 5.55446 5.58968 5.66872 5.77341 5.88515 6.07366 6.18163 6.69197 6.84349 7.03730 7.25776 7.41154 8.87916 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.003915 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.001218 B = 7150.432458 C = 8176.454390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H 0.006 0.994 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.261 1.261 12 N -0.701 5.701 13 C 0.572 3.428 14 O -0.580 6.580 15 C -0.025 4.025 16 C -0.117 4.117 17 C -0.133 4.133 18 C 0.100 3.900 19 C 0.234 3.766 20 N -0.301 5.301 21 N -0.051 5.051 22 N -0.193 5.193 23 H 0.498 0.502 24 N -0.273 5.273 25 N -0.508 5.508 26 H 0.429 0.571 27 H 0.015 0.985 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.266 0.734 31 H 0.399 0.601 32 H 0.161 0.839 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.164 -12.742 -19.412 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.024 0.976 4 C -0.588 4.588 5 H 0.091 0.909 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.185 1.185 12 N -0.349 5.349 13 C 0.359 3.641 14 O -0.460 6.460 15 C -0.142 4.142 16 C -0.143 4.143 17 C -0.161 4.161 18 C -0.019 4.019 19 C -0.046 4.046 20 N -0.174 5.174 21 N -0.046 5.046 22 N -0.045 5.045 23 H 0.358 0.642 24 N -0.126 5.126 25 N -0.106 5.106 26 H 0.269 0.731 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.234 0.766 32 H 0.179 0.821 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.005 -12.564 -19.045 23.867 hybrid contribution 0.238 -0.598 0.958 1.154 sum 7.243 -13.162 -18.086 23.512 Atomic orbital electron populations 1.21916 0.98007 0.99576 0.99907 1.18424 0.91312 0.92146 0.81305 0.97638 1.21522 1.32819 1.13688 0.90783 0.90930 1.25769 0.94784 0.95566 1.02228 1.70041 1.36759 1.23809 1.24712 0.85348 0.77806 0.79138 0.78065 1.20354 1.20858 1.18501 1.46228 1.64998 1.13834 1.09866 1.17489 0.77841 0.86174 0.82552 1.90790 1.53339 1.16677 1.85207 1.20482 1.12954 0.84212 0.96583 1.21451 1.02036 1.00857 0.89957 1.21344 1.04702 0.89091 1.00937 1.17064 1.09577 0.90042 0.85249 1.22399 1.01763 0.93404 0.87082 1.76192 1.17687 0.98007 1.25488 1.78848 1.13659 1.21697 0.90373 1.47824 1.39855 1.04549 1.12286 0.64240 1.74957 1.18478 0.98794 1.20367 1.41849 1.49222 1.09306 1.10182 0.73076 0.96571 0.94123 0.91194 0.92434 0.76629 0.82108 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.85 9.26 71.98 0.67 -6.18 16 2 C 0.27 14.05 2.56 44.24 0.11 14.16 16 3 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16 4 C -0.55 -29.01 8.73 25.60 0.22 -28.78 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -52.18 11.32 21.45 0.24 -51.94 16 8 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 12 N -0.70 -29.38 5.06 -450.12 -2.28 -31.66 16 13 C 0.57 23.57 7.75 86.43 0.67 24.24 16 14 O -0.58 -28.64 16.54 -4.39 -0.07 -28.71 16 15 C -0.03 -0.79 7.04 40.37 0.28 -0.51 16 16 C -0.12 -3.16 10.60 22.50 0.24 -2.92 16 17 C -0.13 -2.89 10.79 22.44 0.24 -2.64 16 18 C 0.10 2.34 7.12 40.89 0.29 2.63 16 19 C 0.23 5.02 8.21 137.11 1.13 6.15 16 20 N -0.30 -6.88 12.54 -52.41 -0.66 -7.53 16 21 N -0.05 -0.91 13.46 37.02 0.50 -0.41 16 22 N -0.19 -2.13 7.90 37.02 0.29 -1.84 16 23 H 0.50 0.18 8.96 -347.50 -3.12 -2.94 16 24 N -0.27 -4.48 12.39 -52.36 -0.65 -5.13 16 25 N -0.51 -13.08 6.03 -172.28 -1.04 -14.11 16 26 H 0.43 9.90 8.16 -92.71 -0.76 9.14 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 3.86 6.07 -2.38 -0.01 3.85 16 30 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.40 14.05 7.64 -92.71 -0.71 13.34 16 32 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 33 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -71.27 300.33 -0.70 -71.97 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -3.37 Total: 17.97 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 4.30 Total: 7.51 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -3.59 Total: -112.62 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.07 Total: -28.71 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -71.27 -0.70 -71.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824385718.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.984 kcal (2) G-P(sol) polarization free energy of solvation -71.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds