Wall clock time and date at job start Mon Mar 30 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46594 * 2 1 4 4 C 1.36977 * 119.99773 * 262.07646 * 3 2 1 5 5 H 1.07998 * 119.99740 * 219.46853 * 4 3 2 6 6 C 1.38966 * 119.99914 * 39.46922 * 4 3 2 7 7 N 1.31415 * 120.00041 * 29.20664 * 6 4 3 8 8 Si 1.86805 * 119.99625 * 209.20608 * 6 4 3 9 9 H 1.48493 * 109.47227 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46988 * 120.00335 * 8 6 4 11 11 H 1.48496 * 109.47094 * 240.00083 * 8 6 4 12 12 C 1.34776 * 120.00140 * 82.08355 * 3 2 1 13 13 O 1.21656 * 119.99863 * 8.70846 * 12 3 2 14 14 C 1.47226 * 120.00116 * 188.71716 * 12 3 2 15 15 C 1.37912 * 126.53361 * 187.47794 * 14 12 3 16 16 N 1.34802 * 108.23612 * 179.97438 * 15 14 12 17 17 H 0.96999 * 125.36605 * 179.97438 * 16 15 14 18 18 C 1.37323 * 109.27072 * 0.26232 * 16 15 14 19 19 C 1.48004 * 125.75272 * 179.73005 * 18 16 15 20 20 N 1.34183 * 126.69605 * 179.71344 * 19 18 16 21 21 N 1.28981 * 107.25022 * 179.87560 * 20 19 18 22 22 N 1.28723 * 108.98908 * 0.40098 * 21 20 19 23 23 H 0.96996 * 125.32434 * 179.76565 * 22 21 20 24 24 N 1.28875 * 109.35630 * 359.74666 * 22 21 20 25 25 C 1.35695 * 108.49301 * 359.56815 * 18 16 15 26 26 H 1.08998 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47088 * 299.99761 * 1 2 3 28 28 H 1.08996 * 109.47257 * 60.00049 * 1 2 3 29 29 H 1.08996 * 109.47088 * 240.00239 * 2 1 3 30 30 H 1.08996 * 109.47257 * 119.99951 * 2 1 3 31 31 H 0.97003 * 119.99798 * 179.97438 * 7 6 4 32 32 H 1.07994 * 125.88270 * 0.02562 * 15 14 12 33 33 H 1.08005 * 126.47100 * 180.16181 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4007 1.9725 -1.1750 5 1 3.2681 2.6155 -1.1986 6 6 1.6725 1.7449 -2.3365 7 7 0.3860 1.4862 -2.2654 8 14 2.5224 1.8069 -3.9988 9 1 3.9625 2.1142 -3.8073 10 1 2.3829 0.4923 -4.6753 11 1 1.8974 2.8628 -4.8353 12 6 2.0913 2.0703 1.1561 13 8 1.9050 1.5021 2.2155 14 6 2.3962 3.5105 1.1367 15 6 2.6445 4.3119 2.2313 16 7 2.8803 5.5644 1.7923 17 1 3.0825 6.3279 2.3554 18 6 2.7828 5.5905 0.4228 19 6 2.9683 6.7824 -0.4348 20 7 2.8829 6.8284 -1.7731 21 7 3.1069 8.0478 -2.1289 22 7 3.3348 8.7556 -1.0782 23 1 3.5344 9.7048 -1.0739 24 7 3.2559 8.0060 -0.0329 25 6 2.4913 4.3385 -0.0119 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 -0.1223 1.3277 -3.0762 32 1 2.6499 3.9910 3.2625 33 1 2.3532 4.0311 -1.0380 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825394379.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:07 Heat of formation + Delta-G solvation = 154.061925 kcal Electronic energy + Delta-G solvation = -21152.986123 eV Core-core repulsion = 17832.686383 eV Total energy + Delta-G solvation = -3320.299740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.26671 -40.66225 -38.00714 -34.81221 -34.19724 -33.12863 -31.57770 -31.14749 -29.19780 -28.55071 -24.90550 -24.39935 -23.58886 -22.91766 -20.60171 -20.17867 -19.00233 -18.70976 -17.90853 -16.99739 -16.33390 -15.20317 -14.54905 -14.30713 -14.08860 -14.03572 -13.67633 -13.32956 -12.67049 -12.44785 -12.31896 -12.12690 -11.78710 -11.55472 -11.23341 -11.12904 -10.97474 -10.96021 -10.78118 -10.64600 -10.36666 -10.17246 -9.47282 -8.84934 -8.36436 -8.23385 -7.61857 -7.35046 -6.26517 -3.91909 1.10392 1.75388 2.32432 2.67924 3.21194 3.29766 3.32831 3.37822 3.44331 4.03552 4.18731 4.58082 4.61842 5.02827 5.12701 5.48653 5.61263 5.65785 6.14585 6.15526 6.42346 6.46083 6.70188 6.74857 6.86722 6.94376 7.07362 7.31238 7.37698 7.43463 7.56234 7.81317 8.03989 8.08396 8.31502 8.58608 9.18660 9.66001 10.09434 10.64361 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.007124 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.234397 B = 3929.485366 C = 5357.968501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.137 3.863 3 N -0.432 5.432 4 C -0.345 4.345 5 H 0.099 0.901 6 C 0.052 3.948 7 N -0.835 5.835 8 Si 0.902 3.098 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.536 3.464 13 O -0.617 6.617 14 C -0.183 4.183 15 C 0.067 3.933 16 N -0.538 5.538 17 H 0.414 0.586 18 C 0.015 3.985 19 C 0.271 3.729 20 N -0.254 5.254 21 N -0.052 5.052 22 N -0.236 5.236 23 H 0.471 0.529 24 N -0.325 5.325 25 C -0.056 4.056 26 H 0.024 0.976 27 H 0.033 0.967 28 H 0.131 0.869 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.269 0.731 32 H 0.178 0.822 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 11.592 2.055 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.014 3.986 3 N -0.150 5.150 4 C -0.472 4.472 5 H 0.116 0.884 6 C -0.155 4.155 7 N -0.469 5.469 8 Si 0.727 3.273 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.204 1.204 12 C 0.327 3.673 13 O -0.505 6.505 14 C -0.193 4.193 15 C -0.073 4.073 16 N -0.133 5.133 17 H 0.251 0.749 18 C -0.096 4.096 19 C -0.008 4.008 20 N -0.128 5.128 21 N -0.048 5.048 22 N -0.081 5.081 23 H 0.324 0.676 24 N -0.177 5.177 25 C -0.084 4.084 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.149 0.851 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.195 0.805 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.373 11.702 1.863 12.630 hybrid contribution 0.468 0.838 -0.171 0.975 sum 4.841 12.540 1.692 13.548 Atomic orbital electron populations 1.22769 0.96569 0.99514 1.06114 1.21025 0.94814 0.83621 0.99162 1.43328 1.55952 1.09929 1.05745 1.19553 1.10745 1.32073 0.84846 0.88356 1.25360 0.94030 0.96154 0.99963 1.69634 1.05330 1.42991 1.28978 0.86278 0.80562 0.77978 0.82435 1.18903 1.20643 1.20382 1.17440 0.80926 0.84808 0.84149 1.90591 1.58025 1.70679 1.31219 1.19784 1.12233 0.95165 0.92121 1.22218 1.02891 0.82598 0.99549 1.41396 1.56015 1.10159 1.05753 0.74934 1.16696 1.20629 0.90773 0.81489 1.22657 0.98873 0.89931 0.89354 1.76252 1.17832 1.08460 1.10232 1.78926 1.13610 0.98244 1.14001 1.47567 1.45427 1.13835 1.01233 0.67566 1.74923 1.24614 1.03426 1.14752 1.22435 0.95920 0.88194 1.01898 0.95698 0.94802 0.85123 0.92230 0.93749 0.92065 0.80454 0.79740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.54 9.93 37.16 0.37 -4.17 16 2 C 0.14 3.32 5.50 -4.04 -0.02 3.30 16 3 N -0.43 -11.02 2.53 -116.09 -0.29 -11.31 16 4 C -0.34 -8.60 6.26 -14.98 -0.09 -8.69 16 5 H 0.10 2.41 6.03 -52.49 -0.32 2.10 16 6 C 0.05 1.28 4.74 -17.46 -0.08 1.20 16 7 N -0.83 -21.09 9.79 55.50 0.54 -20.55 16 8 Si 0.90 19.30 29.64 -169.99 -5.04 14.26 16 9 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 C 0.54 13.57 7.53 -12.61 -0.09 13.48 16 13 O -0.62 -16.66 16.59 5.23 0.09 -16.58 16 14 C -0.18 -3.98 5.98 -104.96 -0.63 -4.61 16 15 C 0.07 1.15 11.74 -16.37 -0.19 0.96 16 16 N -0.54 -7.99 6.01 -9.16 -0.06 -8.05 16 17 H 0.41 4.63 8.96 -40.82 -0.37 4.26 16 18 C 0.02 0.27 7.08 -82.31 -0.58 -0.32 16 19 C 0.27 4.50 8.20 -156.25 -1.28 3.22 16 20 N -0.25 -4.48 12.52 32.10 0.40 -4.08 16 21 N -0.05 -0.74 13.46 60.35 0.81 0.07 16 22 N -0.24 -2.52 7.90 60.35 0.48 -2.04 16 23 H 0.47 2.46 8.96 -340.34 -3.05 -0.60 16 24 N -0.32 -4.34 12.41 32.11 0.40 -3.94 16 25 C -0.06 -1.18 8.77 -39.08 -0.34 -1.52 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.13 3.31 4.51 -51.93 -0.23 3.07 16 29 H 0.06 1.41 7.70 -51.93 -0.40 1.01 16 30 H 0.04 1.06 7.56 -51.93 -0.39 0.67 16 31 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 32 H 0.18 2.61 8.06 -52.49 -0.42 2.19 16 33 H 0.19 4.22 5.27 -52.48 -0.28 3.95 16 LS Contribution 289.57 15.07 4.36 4.36 Total: -1.00 -31.55 289.57 -6.70 -38.25 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.44 Total: 6.75 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.95 Total: 2.85 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 2.28 Total: -49.89 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.09 Total: -16.58 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.04 Total: 14.26 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.55 -6.70 -38.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825394379.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.307 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds