Wall clock time and date at job start Mon Mar 30 2020 01:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46594 * 2 1 4 4 C 1.36977 * 119.99773 * 262.07646 * 3 2 1 5 5 H 1.07998 * 119.99740 * 219.46853 * 4 3 2 6 6 C 1.38966 * 119.99914 * 39.46922 * 4 3 2 7 7 N 1.31415 * 120.00041 * 29.20664 * 6 4 3 8 8 Si 1.86805 * 119.99625 * 209.20608 * 6 4 3 9 9 H 1.48493 * 109.47227 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46988 * 120.00335 * 8 6 4 11 11 H 1.48496 * 109.47094 * 240.00083 * 8 6 4 12 12 C 1.34776 * 120.00140 * 82.08355 * 3 2 1 13 13 O 1.21656 * 119.99863 * 8.70846 * 12 3 2 14 14 C 1.47226 * 120.00116 * 188.71716 * 12 3 2 15 15 C 1.37912 * 126.53361 * 187.47794 * 14 12 3 16 16 N 1.34802 * 108.23612 * 179.97438 * 15 14 12 17 17 H 0.96999 * 125.36605 * 179.97438 * 16 15 14 18 18 C 1.37323 * 109.27072 * 0.26232 * 16 15 14 19 19 C 1.48004 * 125.75272 * 179.73005 * 18 16 15 20 20 N 1.34183 * 126.69605 * 179.71344 * 19 18 16 21 21 N 1.28981 * 107.25022 * 179.87560 * 20 19 18 22 22 N 1.28723 * 108.98908 * 0.40098 * 21 20 19 23 23 H 0.96996 * 125.32434 * 179.76565 * 22 21 20 24 24 N 1.28875 * 109.35630 * 359.74666 * 22 21 20 25 25 C 1.35695 * 108.49301 * 359.56815 * 18 16 15 26 26 H 1.08998 * 109.47021 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47088 * 299.99761 * 1 2 3 28 28 H 1.08996 * 109.47257 * 60.00049 * 1 2 3 29 29 H 1.08996 * 109.47088 * 240.00239 * 2 1 3 30 30 H 1.08996 * 109.47257 * 119.99951 * 2 1 3 31 31 H 0.97003 * 119.99798 * 179.97438 * 7 6 4 32 32 H 1.07994 * 125.88270 * 0.02562 * 15 14 12 33 33 H 1.08005 * 126.47100 * 180.16181 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4007 1.9725 -1.1750 5 1 3.2681 2.6155 -1.1986 6 6 1.6725 1.7449 -2.3365 7 7 0.3860 1.4862 -2.2654 8 14 2.5224 1.8069 -3.9988 9 1 3.9625 2.1142 -3.8073 10 1 2.3829 0.4923 -4.6753 11 1 1.8974 2.8628 -4.8353 12 6 2.0913 2.0703 1.1561 13 8 1.9050 1.5021 2.2155 14 6 2.3962 3.5105 1.1367 15 6 2.6445 4.3119 2.2313 16 7 2.8803 5.5644 1.7923 17 1 3.0825 6.3279 2.3554 18 6 2.7828 5.5905 0.4228 19 6 2.9683 6.7824 -0.4348 20 7 2.8829 6.8284 -1.7731 21 7 3.1069 8.0478 -2.1289 22 7 3.3348 8.7556 -1.0782 23 1 3.5344 9.7048 -1.0739 24 7 3.2559 8.0060 -0.0329 25 6 2.4913 4.3385 -0.0119 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 -0.1223 1.3277 -3.0762 32 1 2.6499 3.9910 3.2625 33 1 2.3532 4.0311 -1.0380 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825394379.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:06 Heat of formation + Delta-G solvation = 131.219741 kcal Electronic energy + Delta-G solvation = -21153.976634 eV Core-core repulsion = 17832.686383 eV Total energy + Delta-G solvation = -3321.290251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.41713 -42.12113 -39.87749 -36.74812 -35.36835 -34.31866 -33.49672 -32.76911 -30.93857 -29.97883 -26.79528 -25.57350 -24.90553 -24.66766 -22.32038 -21.59144 -20.52394 -20.21326 -19.24652 -18.14998 -18.10143 -16.98195 -16.38956 -15.99719 -15.68181 -15.45371 -15.02561 -14.87259 -14.45222 -14.24133 -14.14537 -13.60399 -13.27392 -13.16924 -12.99698 -12.71359 -12.51335 -12.39558 -12.18229 -12.13819 -11.98757 -11.94532 -11.40877 -10.75441 -10.29409 -9.75516 -9.37561 -8.94891 -8.14535 -5.84818 -0.02591 0.46309 1.09808 1.42442 1.51604 1.56299 1.67609 1.97394 2.02161 2.39833 2.76276 2.81715 3.18492 3.25955 3.45277 4.20572 4.36039 4.40296 4.46972 4.62199 4.67512 4.81171 4.94814 5.06211 5.18348 5.34535 5.44156 5.53250 5.65408 5.86821 5.96787 6.13628 6.14349 6.61043 6.66926 7.15063 7.27506 7.74441 8.18276 8.77761 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.007124 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.234397 B = 3929.485366 C = 5357.968501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 N -0.445 5.445 4 C -0.352 4.352 5 H 0.097 0.903 6 C 0.021 3.979 7 N -0.860 5.860 8 Si 0.962 3.038 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.280 1.280 12 C 0.523 3.477 13 O -0.645 6.645 14 C -0.231 4.231 15 C 0.097 3.903 16 N -0.508 5.508 17 H 0.437 0.563 18 C 0.029 3.971 19 C 0.252 3.748 20 N -0.295 5.295 21 N -0.054 5.054 22 N -0.196 5.196 23 H 0.495 0.505 24 N -0.301 5.301 25 C -0.082 4.082 26 H 0.050 0.950 27 H 0.013 0.987 28 H 0.120 0.880 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.272 0.728 32 H 0.208 0.792 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 13.821 2.292 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.012 3.988 3 N -0.162 5.162 4 C -0.479 4.479 5 H 0.114 0.886 6 C -0.184 4.184 7 N -0.495 5.495 8 Si 0.786 3.214 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.206 1.206 12 C 0.316 3.684 13 O -0.536 6.536 14 C -0.240 4.240 15 C -0.045 4.045 16 N -0.105 5.105 17 H 0.278 0.722 18 C -0.083 4.083 19 C -0.028 4.028 20 N -0.167 5.167 21 N -0.049 5.049 22 N -0.048 5.048 23 H 0.355 0.645 24 N -0.155 5.155 25 C -0.110 4.110 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.137 0.863 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.224 0.776 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.307 13.983 2.088 15.102 hybrid contribution 0.209 0.352 -0.194 0.453 sum 5.516 14.335 1.894 15.476 Atomic orbital electron populations 1.22643 0.96200 1.00699 1.04403 1.21047 0.95126 0.83625 0.98995 1.43544 1.56146 1.10337 1.06171 1.19651 1.10829 1.32447 0.85017 0.88593 1.25981 0.94339 0.95732 1.02367 1.69704 1.06183 1.43797 1.29813 0.85365 0.79493 0.77795 0.78716 1.18776 1.20141 1.20613 1.18033 0.80370 0.86373 0.83673 1.90537 1.59460 1.71725 1.31905 1.19662 1.16153 0.93904 0.94272 1.22458 1.00049 0.82378 0.99585 1.41279 1.53929 1.10289 1.04958 0.72186 1.16521 1.18961 0.90275 0.82544 1.22456 1.00689 0.90517 0.89115 1.76248 1.19327 1.10047 1.11064 1.78877 1.13951 0.97635 1.14455 1.47664 1.42380 1.14718 0.99998 0.64547 1.74879 1.23278 1.02338 1.15011 1.22028 0.98469 0.89796 1.00710 0.93138 0.96789 0.86296 0.92056 0.94008 0.91755 0.77578 0.82419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -8.75 9.93 71.98 0.72 -8.04 16 2 C 0.14 6.72 5.50 86.38 0.48 7.20 16 3 N -0.45 -23.38 2.53 -639.44 -1.62 -25.00 16 4 C -0.35 -18.06 6.26 84.06 0.53 -17.54 16 5 H 0.10 4.89 6.03 -2.91 -0.02 4.88 16 6 C 0.02 1.05 4.74 84.93 0.40 1.45 16 7 N -0.86 -44.24 9.79 21.67 0.21 -44.03 16 8 Si 0.96 40.15 29.64 68.60 2.03 42.18 16 9 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 10 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 C 0.52 27.20 7.53 86.61 0.65 27.85 16 13 O -0.65 -35.64 16.59 -4.21 -0.07 -35.71 16 14 C -0.23 -10.10 5.98 -20.08 -0.12 -10.22 16 15 C 0.10 3.17 11.74 84.16 0.99 4.16 16 16 N -0.51 -13.78 6.01 -182.91 -1.10 -14.88 16 17 H 0.44 8.05 8.96 -92.71 -0.83 7.22 16 18 C 0.03 0.99 7.08 40.29 0.29 1.28 16 19 C 0.25 7.91 8.20 137.15 1.12 9.04 16 20 N -0.29 -10.05 12.52 -52.37 -0.66 -10.71 16 21 N -0.05 -1.42 13.46 37.02 0.50 -0.92 16 22 N -0.20 -3.54 7.90 37.02 0.29 -3.25 16 23 H 0.50 3.14 8.96 -347.51 -3.11 0.03 16 24 N -0.30 -7.07 12.41 -52.32 -0.65 -7.72 16 25 C -0.08 -3.49 8.77 22.59 0.20 -3.29 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.12 6.16 4.51 -2.39 -0.01 6.14 16 29 H 0.06 2.95 7.70 -2.39 -0.02 2.94 16 30 H 0.04 2.05 7.56 -2.39 -0.02 2.03 16 31 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 32 H 0.21 5.49 8.06 -2.91 -0.02 5.47 16 33 H 0.16 7.53 5.27 -2.91 -0.02 7.52 16 Total: -1.00 -69.95 289.57 1.45 -68.50 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -2.74 Total: 19.64 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.25 Total: 11.89 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.02 Total: -106.50 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.07 Total: -35.71 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -69.95 1.45 -68.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825394379.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.718 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds