Wall clock time and date at job start Mon Mar 30 2020 01:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47139 * 2 1 4 4 C 1.36830 * 120.00034 * 264.47334 * 3 2 1 5 5 H 1.08005 * 119.99791 * 133.97888 * 4 3 2 6 6 C 1.39023 * 120.00086 * 313.98327 * 4 3 2 7 7 N 1.31388 * 119.99929 * 165.50295 * 6 4 3 8 8 Si 1.86802 * 119.99885 * 345.50184 * 6 4 3 9 9 H 1.48498 * 109.47047 * 92.55497 * 8 6 4 10 10 H 1.48503 * 109.46900 * 212.55321 * 8 6 4 11 11 H 1.48498 * 109.47201 * 332.55319 * 8 6 4 12 12 C 1.34782 * 119.99748 * 84.47097 * 3 2 1 13 13 O 1.21755 * 119.99974 * 353.82951 * 12 3 2 14 14 C 1.46453 * 119.99659 * 173.83080 * 12 3 2 15 15 C 1.38176 * 126.01380 * 173.16947 * 14 12 3 16 16 C 1.39327 * 107.43580 * 179.97438 * 15 14 12 17 17 C 1.37821 * 107.66853 * 0.02562 * 16 15 14 18 18 C 1.47879 * 125.81601 * 179.97438 * 17 16 15 19 19 N 1.34222 * 126.70537 * 179.71079 * 18 17 16 20 20 N 1.28979 * 107.25230 * 179.83827 * 19 18 17 21 21 N 1.28716 * 108.99990 * 0.43460 * 20 19 18 22 22 H 0.97000 * 125.32058 * 179.74820 * 21 20 19 23 23 N 1.28873 * 109.36861 * 359.72090 * 21 20 19 24 24 N 1.36459 * 108.36566 * 359.73242 * 17 16 15 25 25 H 0.96998 * 125.72129 * 180.28241 * 24 17 16 26 26 H 1.09000 * 109.46691 * 175.16659 * 1 2 3 27 27 H 1.08994 * 109.47163 * 295.16969 * 1 2 3 28 28 H 1.09001 * 109.47078 * 55.17537 * 1 2 3 29 29 H 1.08994 * 109.47147 * 119.99970 * 2 1 3 30 30 H 1.09002 * 109.46988 * 240.00054 * 2 1 3 31 31 H 0.97001 * 119.99611 * 179.97438 * 7 6 4 32 32 H 1.07996 * 126.28292 * 359.97438 * 15 14 12 33 33 H 1.07998 * 126.16661 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3540 1.9882 -1.1795 5 1 2.0129 2.9918 -1.3865 6 6 3.1341 1.3131 -2.1113 7 7 3.2224 1.7622 -3.3429 8 14 4.0568 -0.2326 -1.6124 9 1 3.2187 -1.4241 -1.9007 10 1 5.3247 -0.3218 -2.3804 11 1 4.3605 -0.1807 -0.1598 12 6 2.1370 2.0541 1.1618 13 8 1.7339 1.5564 2.1974 14 6 2.7506 3.3837 1.1786 15 6 2.8161 4.2346 2.2653 16 6 3.4792 5.3885 1.8527 17 6 3.8088 5.2290 0.5240 18 6 4.5229 6.2155 -0.3149 19 7 4.8574 6.0769 -1.6073 20 7 5.4627 7.1586 -1.9639 21 7 5.5272 7.9549 -0.9547 22 1 5.9376 8.8338 -0.9591 23 7 4.9610 7.4023 0.0626 24 7 3.3687 4.0035 0.1159 25 1 3.4722 3.6321 -0.7742 26 1 -0.3633 -1.0240 -0.0866 27 1 -0.3633 0.4370 0.9300 28 1 -0.3633 0.5869 -0.8436 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.7670 1.2913 -3.9930 32 1 2.4251 4.0409 3.2532 33 1 3.6958 6.2521 2.4638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825395820.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:05 Heat of formation + Delta-G solvation = 145.217439 kcal Electronic energy + Delta-G solvation = -21203.375243 eV Core-core repulsion = 17882.691977 eV Total energy + Delta-G solvation = -3320.683266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.21998 -40.58505 -38.37545 -35.27772 -34.13429 -33.12255 -32.44976 -30.84285 -30.00187 -28.38850 -25.26583 -24.39252 -24.13685 -22.83395 -20.86396 -19.80621 -19.19716 -19.11064 -18.15563 -16.94655 -16.18653 -15.68417 -15.41752 -14.45872 -14.06912 -14.04803 -13.46170 -13.38633 -13.13152 -12.73037 -12.45173 -12.32916 -12.16654 -11.94601 -11.73928 -11.46690 -11.18072 -11.09712 -10.93524 -10.86975 -10.61972 -10.21723 -10.01927 -9.45498 -8.91020 -8.42330 -7.94930 -7.45004 -6.73477 -4.49448 1.14145 1.66398 2.34833 2.59010 2.94352 3.10651 3.16886 3.47474 3.55196 3.91831 4.16886 4.21516 4.29502 4.60635 4.83281 5.53555 5.68049 5.71796 5.81826 5.93193 6.00208 6.01446 6.10046 6.35919 6.47728 6.57750 6.62336 6.68246 6.84168 7.17494 7.27353 7.51224 7.78584 7.92796 8.20215 8.35944 8.68251 9.10762 9.46680 10.32587 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.006735 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.903553 B = 4156.337859 C = 5230.077678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 N -0.461 5.461 4 C -0.372 4.372 5 H 0.105 0.895 6 C 0.073 3.927 7 N -0.839 5.839 8 Si 0.883 3.117 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.257 1.257 12 C 0.548 3.452 13 O -0.580 6.580 14 C 0.033 3.967 15 C -0.152 4.152 16 C -0.149 4.149 17 C 0.060 3.940 18 C 0.258 3.742 19 N -0.266 5.266 20 N -0.053 5.053 21 N -0.235 5.235 22 H 0.473 0.527 23 N -0.294 5.294 24 N -0.483 5.483 25 H 0.444 0.556 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.282 0.718 32 H 0.147 0.853 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 7.385 3.634 8.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.182 5.182 4 C -0.500 4.500 5 H 0.122 0.878 6 C -0.139 4.139 7 N -0.471 5.471 8 Si 0.709 3.291 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.181 1.181 12 C 0.338 3.662 13 O -0.463 6.463 14 C -0.089 4.089 15 C -0.178 4.178 16 C -0.177 4.177 17 C -0.061 4.061 18 C -0.021 4.021 19 N -0.139 5.139 20 N -0.048 5.048 21 N -0.080 5.080 22 H 0.326 0.674 23 N -0.147 5.147 24 N -0.088 5.088 25 H 0.297 0.703 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.164 0.836 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.482 7.192 3.090 8.567 hybrid contribution 0.638 -0.402 -0.240 0.791 sum 4.119 6.791 2.851 8.439 Atomic orbital electron populations 1.22001 0.96221 1.00855 1.02478 1.21624 0.94825 0.84857 1.01080 1.43588 1.57041 1.11960 1.05585 1.19061 1.34038 1.03176 0.93696 0.87772 1.25595 0.95292 0.98418 0.94602 1.69699 1.35581 1.39836 1.01995 0.86765 0.79529 0.82412 0.80396 1.19433 1.20961 1.18069 1.17307 0.81286 0.84109 0.83476 1.90704 1.53754 1.69218 1.32653 1.20689 1.04745 0.95500 0.87927 1.21065 1.05043 0.93353 0.98342 1.20898 1.04700 0.99904 0.92239 1.17065 1.08879 0.87269 0.92863 1.22608 0.99016 0.91017 0.89479 1.76344 1.12737 1.13973 1.10871 1.78882 1.14756 0.96869 1.14299 1.47703 1.37905 1.18303 1.04120 0.67386 1.74960 1.15673 1.09805 1.14215 1.43771 1.39381 1.11106 1.14547 0.70297 0.92977 0.92333 0.92109 0.91541 0.91358 0.90704 0.83550 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.20 37.16 0.38 -2.56 16 2 C 0.10 2.10 4.55 -4.04 -0.02 2.08 16 3 N -0.46 -10.79 2.05 -116.38 -0.24 -11.03 16 4 C -0.37 -9.13 6.86 -15.03 -0.10 -9.23 16 5 H 0.11 2.71 6.64 -52.48 -0.35 2.36 16 6 C 0.07 1.80 5.35 -17.45 -0.09 1.71 16 7 N -0.84 -21.60 13.96 55.50 0.77 -20.83 16 8 Si 0.88 19.54 25.03 -169.99 -4.26 15.28 16 9 H -0.27 -5.66 6.71 56.52 0.38 -5.28 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 12 C 0.55 12.92 7.54 -12.95 -0.10 12.82 16 13 O -0.58 -14.33 16.52 5.14 0.08 -14.25 16 14 C 0.03 0.71 6.72 -81.96 -0.55 0.16 16 15 C -0.15 -2.86 10.61 -39.20 -0.42 -3.28 16 16 C -0.15 -2.55 10.79 -39.33 -0.42 -2.98 16 17 C 0.06 1.14 7.12 -82.01 -0.58 0.55 16 18 C 0.26 4.57 8.21 -156.23 -1.28 3.29 16 19 N -0.27 -4.96 12.54 32.08 0.40 -4.56 16 20 N -0.05 -0.80 13.46 60.35 0.81 0.02 16 21 N -0.23 -2.69 7.90 60.35 0.48 -2.21 16 22 H 0.47 2.72 8.96 -340.33 -3.05 -0.33 16 23 N -0.29 -4.24 12.39 32.10 0.40 -3.84 16 24 N -0.48 -10.21 5.31 -5.79 -0.03 -10.24 16 25 H 0.44 10.08 5.48 -40.82 -0.22 9.85 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.38 7.69 -51.93 -0.40 0.98 16 30 H 0.07 1.45 4.08 -51.93 -0.21 1.24 16 31 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.15 2.50 8.06 -52.49 -0.42 2.08 16 33 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 289.63 15.07 4.36 4.36 Total: -1.00 -29.30 289.63 -5.90 -35.20 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.50 Total: 9.53 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -3.19 Total: 2.57 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 2.59 Total: -52.70 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.08 Total: -14.25 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.26 Total: 15.28 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.30 -5.90 -35.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825395820.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.417 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds