Wall clock time and date at job start Mon Mar 30 2020 01:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47139 * 2 1 4 4 C 1.36830 * 120.00034 * 264.47334 * 3 2 1 5 5 H 1.08005 * 119.99791 * 133.97888 * 4 3 2 6 6 C 1.39023 * 120.00086 * 313.98327 * 4 3 2 7 7 N 1.31388 * 119.99929 * 165.50295 * 6 4 3 8 8 Si 1.86802 * 119.99885 * 345.50184 * 6 4 3 9 9 H 1.48498 * 109.47047 * 92.55497 * 8 6 4 10 10 H 1.48503 * 109.46900 * 212.55321 * 8 6 4 11 11 H 1.48498 * 109.47201 * 332.55319 * 8 6 4 12 12 C 1.34782 * 119.99748 * 84.47097 * 3 2 1 13 13 O 1.21755 * 119.99974 * 353.82951 * 12 3 2 14 14 C 1.46453 * 119.99659 * 173.83080 * 12 3 2 15 15 C 1.38176 * 126.01380 * 173.16947 * 14 12 3 16 16 C 1.39327 * 107.43580 * 179.97438 * 15 14 12 17 17 C 1.37821 * 107.66853 * 0.02562 * 16 15 14 18 18 C 1.47879 * 125.81601 * 179.97438 * 17 16 15 19 19 N 1.34222 * 126.70537 * 179.71079 * 18 17 16 20 20 N 1.28979 * 107.25230 * 179.83827 * 19 18 17 21 21 N 1.28716 * 108.99990 * 0.43460 * 20 19 18 22 22 H 0.97000 * 125.32058 * 179.74820 * 21 20 19 23 23 N 1.28873 * 109.36861 * 359.72090 * 21 20 19 24 24 N 1.36459 * 108.36566 * 359.73242 * 17 16 15 25 25 H 0.96998 * 125.72129 * 180.28241 * 24 17 16 26 26 H 1.09000 * 109.46691 * 175.16659 * 1 2 3 27 27 H 1.08994 * 109.47163 * 295.16969 * 1 2 3 28 28 H 1.09001 * 109.47078 * 55.17537 * 1 2 3 29 29 H 1.08994 * 109.47147 * 119.99970 * 2 1 3 30 30 H 1.09002 * 109.46988 * 240.00054 * 2 1 3 31 31 H 0.97001 * 119.99611 * 179.97438 * 7 6 4 32 32 H 1.07996 * 126.28292 * 359.97438 * 15 14 12 33 33 H 1.07998 * 126.16661 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3540 1.9882 -1.1795 5 1 2.0129 2.9918 -1.3865 6 6 3.1341 1.3131 -2.1113 7 7 3.2224 1.7622 -3.3429 8 14 4.0568 -0.2326 -1.6124 9 1 3.2187 -1.4241 -1.9007 10 1 5.3247 -0.3218 -2.3804 11 1 4.3605 -0.1807 -0.1598 12 6 2.1370 2.0541 1.1618 13 8 1.7339 1.5564 2.1974 14 6 2.7506 3.3837 1.1786 15 6 2.8161 4.2346 2.2653 16 6 3.4792 5.3885 1.8527 17 6 3.8088 5.2290 0.5240 18 6 4.5229 6.2155 -0.3149 19 7 4.8574 6.0769 -1.6073 20 7 5.4627 7.1586 -1.9639 21 7 5.5272 7.9549 -0.9547 22 1 5.9376 8.8338 -0.9591 23 7 4.9610 7.4023 0.0626 24 7 3.3687 4.0035 0.1159 25 1 3.4722 3.6321 -0.7742 26 1 -0.3633 -1.0240 -0.0866 27 1 -0.3633 0.4370 0.9300 28 1 -0.3633 0.5869 -0.8436 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.7670 1.2913 -3.9930 32 1 2.4251 4.0409 3.2532 33 1 3.6958 6.2521 2.4638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825395820.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:04 Heat of formation + Delta-G solvation = 124.302741 kcal Electronic energy + Delta-G solvation = -21204.282172 eV Core-core repulsion = 17882.691977 eV Total energy + Delta-G solvation = -3321.590195 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.44750 -42.14853 -40.11349 -37.10397 -35.38199 -34.41618 -34.28803 -32.42305 -31.56985 -29.88355 -27.10344 -25.67596 -25.59157 -24.35028 -22.41066 -21.32953 -20.80652 -20.45162 -19.73811 -18.16033 -17.97323 -17.26052 -17.16972 -16.19501 -15.83336 -15.39384 -15.06006 -14.96101 -14.69813 -14.43588 -14.06818 -13.81637 -13.73766 -13.51176 -13.14268 -13.05284 -12.75228 -12.62927 -12.42822 -12.19535 -12.01650 -11.90504 -11.72235 -11.27741 -10.73505 -9.93384 -9.76375 -8.96663 -8.63490 -6.41193 -0.10952 0.27302 1.02996 1.18955 1.31294 1.35364 1.39249 2.06017 2.08614 2.16705 2.45142 2.56565 2.76536 2.96312 3.34537 4.00930 4.16767 4.24809 4.39551 4.42798 4.44255 4.51001 4.55988 4.82902 5.01498 5.12787 5.24217 5.27267 5.41601 5.64728 5.79940 5.86106 6.03341 6.11062 6.54609 6.79609 7.10847 7.26449 7.63518 8.46008 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.006735 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.903553 B = 4156.337859 C = 5230.077678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.089 3.911 3 N -0.470 5.470 4 C -0.365 4.365 5 H 0.081 0.919 6 C 0.044 3.956 7 N -0.873 5.873 8 Si 0.926 3.074 9 H -0.248 1.248 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.542 3.458 13 O -0.598 6.598 14 C -0.010 4.010 15 C -0.139 4.139 16 C -0.135 4.135 17 C 0.060 3.940 18 C 0.238 3.762 19 N -0.308 5.308 20 N -0.055 5.055 21 N -0.193 5.193 22 H 0.497 0.503 23 N -0.273 5.273 24 N -0.497 5.497 25 H 0.434 0.566 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.286 0.714 32 H 0.163 0.837 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.963 8.355 4.590 10.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 N -0.191 5.191 4 C -0.493 4.493 5 H 0.099 0.901 6 C -0.165 4.165 7 N -0.507 5.507 8 Si 0.751 3.249 9 H -0.173 1.173 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.334 3.666 13 O -0.484 6.484 14 C -0.130 4.130 15 C -0.165 4.165 16 C -0.163 4.163 17 C -0.061 4.061 18 C -0.042 4.042 19 N -0.181 5.181 20 N -0.050 5.050 21 N -0.045 5.045 22 H 0.357 0.643 23 N -0.127 5.127 24 N -0.100 5.100 25 H 0.284 0.716 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.181 0.819 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.128 8.173 4.041 10.009 hybrid contribution 0.498 -0.461 -0.499 0.842 sum 4.626 7.713 3.542 9.666 Atomic orbital electron populations 1.21917 0.94321 1.02807 1.01521 1.21799 0.96524 0.83802 1.01145 1.43700 1.57422 1.12741 1.05189 1.18832 1.33934 1.02519 0.93970 0.90142 1.26022 0.95622 1.00480 0.94369 1.69752 1.36803 1.41276 1.02841 0.86092 0.78914 0.80741 0.79183 1.17274 1.20795 1.19280 1.17625 0.80879 0.84894 0.83222 1.90665 1.54677 1.70008 1.33015 1.20673 1.07271 0.95795 0.89259 1.21365 1.03876 0.93076 0.98168 1.21240 1.03259 1.00251 0.91551 1.17477 1.08164 0.86632 0.93777 1.22520 1.00349 0.91917 0.89421 1.76339 1.14293 1.15690 1.11773 1.78821 1.14733 0.96639 1.14772 1.47787 1.35477 1.18603 1.02677 0.64298 1.74915 1.14825 1.08458 1.14488 1.43634 1.40274 1.12129 1.14002 0.71585 0.89515 0.93126 0.93166 0.91269 0.91328 0.90341 0.81904 0.80380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 10.20 71.98 0.73 -4.66 16 2 C 0.09 3.76 4.55 86.38 0.39 4.15 16 3 N -0.47 -22.31 2.05 -640.29 -1.31 -23.62 16 4 C -0.36 -18.38 6.86 84.10 0.58 -17.80 16 5 H 0.08 4.40 6.64 -2.91 -0.02 4.38 16 6 C 0.04 2.21 5.35 84.95 0.45 2.67 16 7 N -0.87 -45.87 13.96 21.68 0.30 -45.56 16 8 Si 0.93 40.13 25.03 68.60 1.72 41.84 16 9 H -0.25 -9.86 6.71 99.48 0.67 -9.19 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.54 25.93 7.54 86.38 0.65 26.58 16 13 O -0.60 -29.72 16.52 -4.52 -0.07 -29.80 16 14 C -0.01 -0.45 6.72 40.35 0.27 -0.18 16 15 C -0.14 -5.03 10.61 22.52 0.24 -4.79 16 16 C -0.14 -4.34 10.79 22.43 0.24 -4.09 16 17 C 0.06 2.23 7.12 40.88 0.29 2.52 16 18 C 0.24 8.12 8.21 137.09 1.13 9.25 16 19 N -0.31 -11.39 12.54 -52.42 -0.66 -12.05 16 20 N -0.05 -1.57 13.46 37.02 0.50 -1.07 16 21 N -0.19 -3.88 7.90 37.02 0.29 -3.58 16 22 H 0.50 3.92 8.96 -347.51 -3.11 0.81 16 23 N -0.27 -7.13 12.39 -52.37 -0.65 -7.77 16 24 N -0.50 -21.37 5.31 -172.24 -0.91 -22.29 16 25 H 0.43 20.49 5.48 -92.71 -0.51 19.98 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.05 1.91 8.03 -2.39 -0.02 1.89 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.07 2.85 7.69 -2.39 -0.02 2.83 16 30 H 0.07 2.85 4.08 -2.39 -0.01 2.84 16 31 H 0.29 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.16 5.27 8.06 -2.91 -0.02 5.25 16 33 H 0.18 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -63.89 289.63 1.72 -62.17 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -2.46 Total: 28.09 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 4.98 Total: 13.65 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -2.44 Total: -115.95 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.07 Total: -29.80 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.72 Total: 41.84 kcal Total: -63.89 1.72 -62.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825395820.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.473 kcal (2) G-P(sol) polarization free energy of solvation -63.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds