Wall clock time and date at job start Mon Mar 30 2020 01:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 119.99968 * 2 1 4 4 C 1.50693 * 109.47499 * 270.00194 * 3 2 1 5 5 H 1.08000 * 120.00338 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99867 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00399 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99761 * 180.02562 * 6 4 3 9 9 H 1.48490 * 109.47290 * 90.00214 * 8 6 4 10 10 H 1.48507 * 109.46989 * 210.00260 * 8 6 4 11 11 H 1.48499 * 109.47135 * 330.00175 * 8 6 4 12 12 C 1.34776 * 120.00125 * 180.02562 * 2 1 3 13 13 O 1.21614 * 120.00342 * 181.78131 * 12 2 1 14 14 C 1.47314 * 119.99579 * 1.77188 * 12 2 1 15 15 C 1.37828 * 126.52143 * 173.64766 * 14 12 2 16 16 N 1.34787 * 108.24991 * 180.02562 * 15 14 12 17 17 H 0.96997 * 125.36439 * 180.02562 * 16 15 14 18 18 C 1.37314 * 109.26638 * 0.27137 * 16 15 14 19 19 C 1.48009 * 125.75712 * 179.73185 * 18 16 15 20 20 N 1.34179 * 126.69172 * 179.70814 * 19 18 16 21 21 N 1.28987 * 107.24699 * 179.87225 * 20 19 18 22 22 N 1.28717 * 108.99055 * 0.39609 * 21 20 19 23 23 H 0.96992 * 125.32664 * 179.76685 * 22 21 20 24 24 N 1.28876 * 109.35395 * 359.74789 * 22 21 20 25 25 C 1.35697 * 108.47578 * 359.55998 * 18 16 15 26 26 H 1.09002 * 109.47076 * 242.05593 * 1 2 3 27 27 H 1.09004 * 109.47529 * 2.05261 * 1 2 3 28 28 H 1.09003 * 109.47367 * 122.05314 * 1 2 3 29 29 H 1.09004 * 109.46958 * 30.00472 * 3 2 1 30 30 H 1.08998 * 109.47118 * 149.99983 * 3 2 1 31 31 H 0.96997 * 120.00311 * 179.97438 * 7 6 4 32 32 H 1.07998 * 125.87787 * 0.02820 * 15 14 12 33 33 H 1.08001 * 126.46970 * 180.16555 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0974 1.0964 -2.2417 6 6 3.1259 2.8781 -1.6725 7 7 3.5532 3.6182 -0.6729 8 14 3.4366 3.4178 -3.4337 9 1 2.3063 4.2604 -3.8999 10 1 4.6968 4.2011 -3.4964 11 1 3.5539 2.2209 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3546 -1.1675 0.0322 14 6 1.4028 -2.4426 -0.0405 15 6 1.9493 -3.7014 -0.1685 16 7 0.9448 -4.6002 -0.1636 17 1 1.0511 -5.5613 -0.2394 18 6 -0.2530 -3.9403 -0.0396 19 6 -1.5898 -4.5744 -0.0004 20 7 -2.7703 -3.9492 0.1255 21 7 -3.6869 -4.8567 0.1133 22 7 -3.1312 -6.0117 -0.0054 23 1 -3.6011 -6.8596 -0.0366 24 7 -1.8528 -5.8653 -0.0765 25 6 -0.0039 -2.6090 0.0446 26 1 -0.3633 -0.4816 0.9079 27 1 -0.3634 1.0270 -0.0368 28 1 -0.3634 -0.5454 -0.8710 29 1 1.6084 2.0283 0.5139 30 1 3.1498 1.1384 0.5138 31 1 4.0301 4.4441 -0.8501 32 1 3.0013 -3.9286 -0.2575 33 1 -0.7379 -1.8241 0.1515 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825914592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:01 Heat of formation + Delta-G solvation = 154.381648 kcal Electronic energy + Delta-G solvation = -20349.250142 eV Core-core repulsion = 17028.964266 eV Total energy + Delta-G solvation = -3320.285876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.67682 -41.29803 -38.31604 -34.77594 -34.57606 -33.55677 -32.66922 -31.24073 -29.21324 -27.67903 -25.95085 -24.80972 -24.04271 -23.50310 -21.05027 -20.80877 -19.47932 -18.62860 -17.57970 -17.39615 -16.40647 -15.33456 -15.22833 -14.74187 -14.65269 -14.30158 -14.09919 -13.83370 -13.47704 -12.60252 -12.53397 -12.33205 -12.17261 -12.02942 -11.62925 -11.39932 -11.25088 -11.20086 -10.96084 -10.75474 -10.40668 -10.05254 -9.55069 -8.92706 -8.89408 -8.34701 -8.14803 -7.46916 -5.95285 -3.99489 0.71050 1.27794 1.95177 2.14457 2.78844 2.83572 3.36865 3.42896 3.48009 3.57182 4.06396 4.20038 4.30633 4.53856 5.01843 5.13886 5.23048 5.31741 5.39411 5.41881 5.83981 5.89724 6.02323 6.07916 6.11131 6.35281 6.64677 6.76691 7.21731 7.27491 7.56361 7.68994 7.89814 8.02336 8.33905 8.57999 9.01133 9.26417 9.65464 11.12608 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.003797 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.283473 B = 7372.113223 C = 7715.807991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.594 5.594 3 C 0.245 3.755 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.576 3.424 13 O -0.551 6.551 14 C -0.210 4.210 15 C 0.092 3.908 16 N -0.531 5.531 17 H 0.421 0.579 18 C 0.044 3.956 19 C 0.260 3.740 20 N -0.258 5.258 21 N -0.046 5.046 22 N -0.229 5.229 23 H 0.474 0.526 24 N -0.315 5.315 25 C -0.102 4.102 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.262 0.738 32 H 0.188 0.812 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 -20.588 2.168 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.325 5.325 3 C 0.126 3.874 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.364 3.636 13 O -0.430 6.430 14 C -0.220 4.220 15 C -0.048 4.048 16 N -0.126 5.126 17 H 0.259 0.741 18 C -0.068 4.068 19 C -0.019 4.019 20 N -0.131 5.131 21 N -0.041 5.041 22 N -0.075 5.075 23 H 0.328 0.672 24 N -0.167 5.167 25 C -0.130 4.130 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.205 0.795 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.721 -20.535 2.270 24.263 hybrid contribution 0.286 -0.715 -1.134 1.371 sum -12.436 -21.250 1.136 24.647 Atomic orbital electron populations 1.22111 0.81711 1.02896 0.99802 1.47928 1.06068 1.07525 1.70954 1.19333 0.92708 0.77946 0.97420 1.21481 1.36178 1.06154 0.92438 0.92381 1.24932 0.95463 0.96443 0.97326 1.69933 1.38618 1.14338 1.30658 0.86508 0.77585 0.78553 0.84836 1.20696 1.21178 1.19910 1.17206 0.86528 0.82530 0.77316 1.90735 1.13350 1.87292 1.51655 1.19965 0.93140 0.93957 1.14918 1.22330 0.93561 0.87657 1.01285 1.41527 1.04894 1.09591 1.56553 0.74132 1.16502 0.80367 0.90774 1.19193 1.22575 0.93728 0.85211 1.00387 1.76182 0.96134 1.22850 1.17948 1.78943 1.22649 0.88164 1.14362 1.47604 1.02774 1.11014 1.46085 0.67157 1.74944 0.97640 1.20018 1.24142 1.22217 0.96153 0.93785 1.00856 0.92791 0.90709 0.92363 0.94905 0.93695 0.92804 0.79509 0.80734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 8.55 59.84 0.51 1.84 16 2 N -0.59 -13.20 2.86 -184.28 -0.53 -13.72 16 3 C 0.25 6.57 5.14 -5.20 -0.03 6.54 16 4 C -0.52 -15.16 9.39 -34.44 -0.32 -15.49 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 12 C 0.58 12.66 7.67 -12.57 -0.10 12.56 16 13 O -0.55 -14.19 16.47 5.27 0.09 -14.10 16 14 C -0.21 -3.51 6.05 -104.96 -0.63 -4.14 16 15 C 0.09 1.20 11.73 -16.40 -0.19 1.01 16 16 N -0.53 -5.61 6.01 -9.19 -0.06 -5.67 16 17 H 0.42 3.07 8.96 -40.82 -0.37 2.70 16 18 C 0.04 0.55 7.08 -82.31 -0.58 -0.03 16 19 C 0.26 3.09 8.20 -156.26 -1.28 1.81 16 20 N -0.26 -3.22 12.52 32.09 0.40 -2.82 16 21 N -0.05 -0.46 13.46 60.35 0.81 0.35 16 22 N -0.23 -1.62 7.90 60.35 0.48 -1.14 16 23 H 0.47 0.95 8.96 -340.35 -3.05 -2.10 16 24 N -0.32 -3.00 12.41 32.11 0.40 -2.60 16 25 C -0.10 -1.47 8.62 -39.09 -0.34 -1.81 16 26 H 0.05 0.77 6.45 -51.93 -0.33 0.44 16 27 H 0.07 1.25 7.81 -51.93 -0.41 0.84 16 28 H 0.06 0.91 6.51 -51.93 -0.34 0.57 16 29 H 0.03 0.88 7.94 -51.93 -0.41 0.47 16 30 H 0.05 1.35 7.40 -51.93 -0.38 0.96 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.19 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.18 2.36 4.27 -52.49 -0.22 2.14 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -36.85 296.13 -6.77 -43.62 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.48 Total: -3.24 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -3.06 Total: 3.94 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 2.24 Total: -51.86 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.85 -6.77 -43.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825914592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.003 kcal (2) G-P(sol) polarization free energy of solvation -36.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds