Wall clock time and date at job start Mon Mar 30 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 119.99968 * 2 1 4 4 C 1.50693 * 109.47499 * 270.00194 * 3 2 1 5 5 H 1.08000 * 120.00338 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99867 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00399 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99761 * 180.02562 * 6 4 3 9 9 H 1.48490 * 109.47290 * 90.00214 * 8 6 4 10 10 H 1.48507 * 109.46989 * 210.00260 * 8 6 4 11 11 H 1.48499 * 109.47135 * 330.00175 * 8 6 4 12 12 C 1.34776 * 120.00125 * 180.02562 * 2 1 3 13 13 O 1.21614 * 120.00342 * 181.78131 * 12 2 1 14 14 C 1.47314 * 119.99579 * 1.77188 * 12 2 1 15 15 C 1.37828 * 126.52143 * 173.64766 * 14 12 2 16 16 N 1.34787 * 108.24991 * 180.02562 * 15 14 12 17 17 H 0.96997 * 125.36439 * 180.02562 * 16 15 14 18 18 C 1.37314 * 109.26638 * 0.27137 * 16 15 14 19 19 C 1.48009 * 125.75712 * 179.73185 * 18 16 15 20 20 N 1.34179 * 126.69172 * 179.70814 * 19 18 16 21 21 N 1.28987 * 107.24699 * 179.87225 * 20 19 18 22 22 N 1.28717 * 108.99055 * 0.39609 * 21 20 19 23 23 H 0.96992 * 125.32664 * 179.76685 * 22 21 20 24 24 N 1.28876 * 109.35395 * 359.74789 * 22 21 20 25 25 C 1.35697 * 108.47578 * 359.55998 * 18 16 15 26 26 H 1.09002 * 109.47076 * 242.05593 * 1 2 3 27 27 H 1.09004 * 109.47529 * 2.05261 * 1 2 3 28 28 H 1.09003 * 109.47367 * 122.05314 * 1 2 3 29 29 H 1.09004 * 109.46958 * 30.00472 * 3 2 1 30 30 H 1.08998 * 109.47118 * 149.99983 * 3 2 1 31 31 H 0.96997 * 120.00311 * 179.97438 * 7 6 4 32 32 H 1.07998 * 125.87787 * 0.02820 * 15 14 12 33 33 H 1.08001 * 126.46970 * 180.16555 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0974 1.0964 -2.2417 6 6 3.1259 2.8781 -1.6725 7 7 3.5532 3.6182 -0.6729 8 14 3.4366 3.4178 -3.4337 9 1 2.3063 4.2604 -3.8999 10 1 4.6968 4.2011 -3.4964 11 1 3.5539 2.2209 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3546 -1.1675 0.0322 14 6 1.4028 -2.4426 -0.0405 15 6 1.9493 -3.7014 -0.1685 16 7 0.9448 -4.6002 -0.1636 17 1 1.0511 -5.5613 -0.2394 18 6 -0.2530 -3.9403 -0.0396 19 6 -1.5898 -4.5744 -0.0004 20 7 -2.7703 -3.9492 0.1255 21 7 -3.6869 -4.8567 0.1133 22 7 -3.1312 -6.0117 -0.0054 23 1 -3.6011 -6.8596 -0.0366 24 7 -1.8528 -5.8653 -0.0765 25 6 -0.0039 -2.6090 0.0446 26 1 -0.3633 -0.4816 0.9079 27 1 -0.3634 1.0270 -0.0368 28 1 -0.3634 -0.5454 -0.8710 29 1 1.6084 2.0283 0.5139 30 1 3.1498 1.1384 0.5138 31 1 4.0301 4.4441 -0.8501 32 1 3.0013 -3.9286 -0.2575 33 1 -0.7379 -1.8241 0.1515 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825914592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:00 Heat of formation + Delta-G solvation = 125.516633 kcal Electronic energy + Delta-G solvation = -20350.501823 eV Core-core repulsion = 17028.964266 eV Total energy + Delta-G solvation = -3321.537557 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.46253 -42.39194 -39.99131 -36.55506 -35.40376 -34.76348 -34.37535 -32.53869 -30.26937 -29.58153 -27.53158 -25.70226 -25.37075 -24.90117 -22.62456 -21.80805 -20.36393 -19.71335 -18.90957 -18.61413 -18.16742 -17.07945 -16.74337 -16.27216 -16.03450 -15.60308 -15.16114 -15.00740 -14.81266 -14.25775 -14.04843 -13.70729 -13.60479 -13.32015 -13.19846 -12.90939 -12.57147 -12.42706 -12.27236 -12.19639 -12.02057 -11.96481 -11.67126 -10.66593 -10.58367 -10.05177 -9.42433 -9.08214 -8.16308 -6.31367 -0.07086 0.38457 0.88759 1.37041 1.40479 1.43341 1.54135 1.82574 1.87109 2.36601 2.54299 2.71397 2.77961 3.12289 3.33356 3.98099 4.09791 4.22955 4.31086 4.41714 4.49212 4.72155 4.75817 4.95441 4.97571 5.15531 5.30960 5.52623 5.60237 5.63049 5.71931 5.94580 6.12980 6.41455 6.76656 6.89124 7.10152 7.34209 7.59032 8.90339 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.003797 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.283473 B = 7372.113223 C = 7715.807991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.604 5.604 3 C 0.259 3.741 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.569 3.431 13 O -0.605 6.605 14 C -0.247 4.247 15 C 0.115 3.885 16 N -0.506 5.506 17 H 0.441 0.559 18 C 0.055 3.945 19 C 0.245 3.755 20 N -0.285 5.285 21 N -0.051 5.051 22 N -0.197 5.197 23 H 0.495 0.505 24 N -0.302 5.302 25 C -0.110 4.110 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.001 0.999 31 H 0.267 0.733 32 H 0.206 0.794 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 -22.894 1.059 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.334 5.334 3 C 0.138 3.862 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.189 1.189 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.360 3.640 13 O -0.488 6.488 14 C -0.256 4.256 15 C -0.028 4.028 16 N -0.102 5.102 17 H 0.282 0.718 18 C -0.058 4.058 19 C -0.035 4.035 20 N -0.157 5.157 21 N -0.046 5.046 22 N -0.048 5.048 23 H 0.355 0.645 24 N -0.155 5.155 25 C -0.137 4.137 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.019 0.981 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.476 -22.896 1.167 27.113 hybrid contribution 0.706 -0.178 -0.735 1.034 sum -13.770 -23.074 0.432 26.874 Atomic orbital electron populations 1.22362 0.78525 1.03495 1.02052 1.47931 1.08066 1.06257 1.71131 1.18823 0.91256 0.80046 0.96080 1.21726 1.36744 1.06551 0.93056 0.92949 1.25863 0.94901 0.96375 1.02021 1.70053 1.39032 1.14787 1.33013 0.85397 0.78042 0.78170 0.79075 1.18890 1.20528 1.19779 1.17949 0.86251 0.83950 0.75860 1.90682 1.15735 1.88211 1.54203 1.19511 0.94206 0.92595 1.19290 1.22480 0.94596 0.86775 0.98967 1.41444 1.03724 1.10337 1.54666 0.71790 1.16446 0.81244 0.90337 1.17764 1.22424 0.93293 0.85891 1.01883 1.76174 0.96584 1.24012 1.18947 1.78907 1.22253 0.88666 1.14763 1.47698 1.02135 1.11495 1.43448 0.64526 1.74909 0.98506 1.18842 1.23234 1.22131 0.94995 0.94962 1.01622 0.89877 0.90893 0.90677 0.95653 0.98095 0.92407 0.77705 0.80410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.63 8.55 127.77 1.09 3.72 16 2 N -0.60 -27.80 2.86 -855.19 -2.44 -30.25 16 3 C 0.26 14.64 5.14 85.63 0.44 15.08 16 4 C -0.54 -32.38 9.39 25.60 0.24 -32.14 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.42 5.46 84.66 0.46 0.88 16 7 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 8 Si 0.97 45.92 29.54 68.60 2.03 47.94 16 9 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 12 C 0.57 25.84 7.67 86.63 0.66 26.51 16 13 O -0.60 -32.75 16.47 -4.07 -0.07 -32.82 16 14 C -0.25 -8.13 6.05 -20.08 -0.12 -8.25 16 15 C 0.11 2.79 11.73 84.14 0.99 3.78 16 16 N -0.51 -9.25 6.01 -182.98 -1.10 -10.36 16 17 H 0.44 4.80 8.96 -92.71 -0.83 3.97 16 18 C 0.05 1.24 7.08 40.29 0.29 1.53 16 19 C 0.25 5.15 8.20 137.16 1.13 6.28 16 20 N -0.28 -6.48 12.52 -52.37 -0.66 -7.14 16 21 N -0.05 -0.89 13.46 37.02 0.50 -0.39 16 22 N -0.20 -2.11 7.90 37.02 0.29 -1.82 16 23 H 0.50 0.14 8.96 -347.52 -3.11 -2.98 16 24 N -0.30 -4.70 12.41 -52.32 -0.65 -5.35 16 25 C -0.11 -3.01 8.62 22.59 0.19 -2.82 16 26 H 0.08 2.32 6.45 -2.39 -0.02 2.31 16 27 H 0.07 2.46 7.81 -2.38 -0.02 2.44 16 28 H 0.07 2.29 6.51 -2.39 -0.02 2.28 16 29 H 0.03 1.44 7.94 -2.39 -0.02 1.42 16 30 H 0.00 0.06 7.40 -2.39 -0.02 0.04 16 31 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.21 4.22 8.06 -2.91 -0.02 4.19 16 33 H 0.18 4.58 4.27 -2.91 -0.01 4.57 16 Total: -1.00 -82.86 296.13 0.82 -82.04 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -2.74 Total: 0.63 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 5.37 Total: 14.57 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -3.77 Total: -112.36 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.07 Total: -32.82 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -82.86 0.82 -82.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825914592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.557 kcal (2) G-P(sol) polarization free energy of solvation -82.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds