Wall clock time and date at job start Mon Mar 30 2020 01:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 119.99952 * 2 1 4 4 C 1.50701 * 109.47234 * 89.99906 * 3 2 1 5 5 H 1.07996 * 119.99875 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99774 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99989 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99725 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47317 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46833 * 120.00394 * 8 6 4 11 11 H 1.48503 * 109.47484 * 240.00225 * 8 6 4 12 12 C 1.34780 * 120.00068 * 179.97438 * 2 1 3 13 13 O 1.21701 * 120.00230 * 186.26870 * 12 2 1 14 14 C 1.46605 * 119.99506 * 6.26976 * 12 2 1 15 15 C 1.38039 * 126.00617 * 188.00711 * 14 12 2 16 16 C 1.39396 * 107.42836 * 180.02562 * 15 14 12 17 17 C 1.37754 * 107.65170 * 359.97438 * 16 15 14 18 18 C 1.47913 * 125.81661 * 179.97438 * 17 16 15 19 19 N 1.34209 * 126.70288 * 179.71890 * 18 17 16 20 20 N 1.28981 * 107.24703 * 179.83837 * 19 18 17 21 21 N 1.28723 * 109.00204 * 0.42688 * 20 19 18 22 22 H 0.96998 * 125.31597 * 179.75409 * 21 20 19 23 23 N 1.28868 * 109.35802 * 359.72854 * 21 20 19 24 24 N 1.36387 * 108.36027 * 359.73747 * 17 16 15 25 25 H 0.96999 * 125.70927 * 180.27946 * 24 17 16 26 26 H 1.09000 * 109.47184 * 95.81053 * 1 2 3 27 27 H 1.08999 * 109.47287 * 215.80873 * 1 2 3 28 28 H 1.09007 * 109.47250 * 335.81103 * 1 2 3 29 29 H 1.09007 * 109.46802 * 209.99587 * 3 2 1 30 30 H 1.08998 * 109.47320 * 329.99165 * 3 2 1 31 31 H 0.96999 * 120.00331 * 179.97438 * 7 6 4 32 32 H 1.07994 * 126.28398 * 359.96860 * 15 14 12 33 33 H 1.07998 * 126.16889 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0959 2.2417 6 6 3.1269 2.8776 1.6727 7 7 3.5541 3.6176 0.6731 8 14 3.4375 3.4172 3.4338 9 1 2.8596 2.4172 4.3673 10 1 4.9001 3.5248 3.6678 11 1 2.8005 4.7383 3.6665 12 6 2.1389 -1.1672 0.0005 13 8 3.3504 -1.1704 0.1156 14 6 1.4123 -2.4331 -0.1376 15 6 1.9502 -3.6968 0.0012 16 6 0.9216 -4.6137 -0.2094 17 6 -0.2268 -3.9001 -0.4726 18 6 -1.5589 -4.4774 -0.7558 19 7 -2.6894 -3.7998 -1.0090 20 7 -3.6209 -4.6700 -1.2054 21 7 -3.1250 -5.8510 -1.0775 22 1 -3.6193 -6.6801 -1.1730 23 7 -1.8692 -5.7595 -0.8032 24 7 0.0726 -2.5704 -0.4223 25 1 -0.5532 -1.8433 -0.5658 26 1 -0.3633 -0.1040 -1.0224 27 1 -0.3634 -0.8334 0.6013 28 1 -0.3634 0.9375 0.4211 29 1 3.1499 1.1383 -0.5138 30 1 1.6085 2.0284 -0.5139 31 1 4.0310 4.4435 0.8502 32 1 2.9791 -3.9318 0.2300 33 1 1.0093 -5.6895 -0.1721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825915421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:59 Heat of formation + Delta-G solvation = 154.321980 kcal Electronic energy + Delta-G solvation = -20394.574018 eV Core-core repulsion = 17074.285554 eV Total energy + Delta-G solvation = -3320.288463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.70167 -41.28263 -38.44164 -35.12407 -34.61136 -33.61344 -32.71475 -31.14768 -29.48570 -27.74362 -26.28831 -24.87902 -24.50677 -23.03683 -21.13976 -20.47146 -19.81567 -19.31221 -17.41777 -17.17844 -16.58090 -15.96131 -15.23739 -14.99831 -14.59393 -14.24361 -14.01581 -13.76411 -13.23783 -12.88963 -12.64599 -12.46911 -12.25222 -12.20809 -11.80684 -11.66444 -11.43134 -11.24492 -11.15100 -10.88954 -10.63583 -10.19351 -9.67499 -9.28423 -9.02928 -8.46278 -8.10941 -7.75182 -6.06971 -4.11757 0.67352 1.10330 1.89762 2.11508 2.86510 2.94679 3.29896 3.37679 3.41823 3.56996 3.74416 3.92330 4.07925 4.43837 4.94506 5.00342 5.19379 5.26130 5.28270 5.29481 5.43715 5.55044 5.96541 6.00014 6.10784 6.17700 6.62069 6.84060 6.99295 7.25589 7.33290 7.43198 7.85781 7.88922 8.17529 8.22912 8.80196 8.95949 9.53443 11.01254 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.003753 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.092575 B = 7459.684341 C = 7822.290713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.598 5.598 3 C 0.246 3.754 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.284 1.284 12 C 0.572 3.428 13 O -0.517 6.517 14 C 0.008 3.992 15 C -0.127 4.127 16 C -0.138 4.138 17 C 0.076 3.924 18 C 0.252 3.748 19 N -0.279 5.279 20 N -0.046 5.046 21 N -0.227 5.227 22 H 0.476 0.524 23 N -0.284 5.284 24 N -0.520 5.520 25 H 0.428 0.572 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.263 0.737 32 H 0.157 0.843 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.558 -18.064 -4.025 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.330 5.330 3 C 0.127 3.873 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.358 3.642 13 O -0.392 6.392 14 C -0.110 4.110 15 C -0.152 4.152 16 C -0.166 4.166 17 C -0.042 4.042 18 C -0.027 4.027 19 N -0.153 5.153 20 N -0.041 5.041 21 N -0.073 5.073 22 H 0.331 0.669 23 N -0.137 5.137 24 N -0.124 5.124 25 H 0.275 0.725 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.174 0.826 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.582 -17.626 -4.178 22.641 hybrid contribution -0.203 0.142 0.911 0.944 sum -13.785 -17.485 -3.267 22.504 Atomic orbital electron populations 1.21983 0.82296 1.03920 0.99848 1.48137 1.05700 1.08017 1.71110 1.19397 0.92521 0.77469 0.97878 1.21455 1.36661 1.06312 0.92180 0.92236 1.24935 0.95255 0.96339 0.97555 1.69933 1.38331 1.14353 1.30723 0.86417 0.78138 0.78264 0.84463 1.19758 1.20801 1.20983 1.17002 0.86922 0.81679 0.78617 1.90844 1.12695 1.85951 1.49716 1.21177 0.82325 0.96787 1.10731 1.21238 1.00044 0.89422 1.04534 1.21080 0.90143 0.99529 1.05850 1.16902 0.88774 0.84063 1.14494 1.22511 0.93606 0.85726 1.00884 1.76175 0.97012 1.24347 1.17736 1.78868 1.22223 0.88199 1.14855 1.47730 1.05077 1.10432 1.44102 0.66917 1.75001 0.96956 1.20308 1.21386 1.43124 1.09632 1.06688 1.52999 0.72514 0.93302 0.92268 0.88993 0.93546 0.94594 0.92698 0.82570 0.83133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 8.79 59.84 0.53 1.52 16 2 N -0.60 -12.57 2.86 -184.53 -0.53 -13.09 16 3 C 0.25 6.32 5.09 -5.19 -0.03 6.29 16 4 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.57 12.15 7.62 -12.88 -0.10 12.05 16 13 O -0.52 -13.02 16.53 5.19 0.09 -12.94 16 14 C 0.01 0.14 6.62 -81.95 -0.54 -0.41 16 15 C -0.13 -1.88 10.61 -39.22 -0.42 -2.30 16 16 C -0.14 -1.74 10.79 -39.33 -0.42 -2.16 16 17 C 0.08 1.00 7.12 -82.06 -0.58 0.42 16 18 C 0.25 3.07 8.21 -156.24 -1.28 1.78 16 19 N -0.28 -3.44 12.54 32.08 0.40 -3.04 16 20 N -0.05 -0.46 13.46 60.35 0.81 0.35 16 21 N -0.23 -1.62 7.90 60.35 0.48 -1.14 16 22 H 0.48 0.94 8.96 -340.33 -3.05 -2.11 16 23 N -0.28 -2.84 12.39 32.10 0.40 -2.44 16 24 N -0.52 -7.30 5.10 -5.81 -0.03 -7.33 16 25 H 0.43 5.43 4.90 -40.82 -0.20 5.23 16 26 H 0.05 0.63 7.44 -51.93 -0.39 0.24 16 27 H 0.06 0.82 5.68 -51.93 -0.29 0.53 16 28 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 29 H 0.05 1.33 7.52 -51.93 -0.39 0.94 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 297.45 15.07 4.48 4.48 Total: -1.00 -34.67 297.45 -7.00 -41.68 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.55 Total: -1.43 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -3.27 Total: 3.69 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 2.27 Total: -52.25 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.67 -7.00 -41.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825915421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.998 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds