Wall clock time and date at job start Mon Mar 30 2020 01:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 119.99952 * 2 1 4 4 C 1.50701 * 109.47234 * 89.99906 * 3 2 1 5 5 H 1.07996 * 119.99875 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99774 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99989 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99725 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47317 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46833 * 120.00394 * 8 6 4 11 11 H 1.48503 * 109.47484 * 240.00225 * 8 6 4 12 12 C 1.34780 * 120.00068 * 179.97438 * 2 1 3 13 13 O 1.21701 * 120.00230 * 186.26870 * 12 2 1 14 14 C 1.46605 * 119.99506 * 6.26976 * 12 2 1 15 15 C 1.38039 * 126.00617 * 188.00711 * 14 12 2 16 16 C 1.39396 * 107.42836 * 180.02562 * 15 14 12 17 17 C 1.37754 * 107.65170 * 359.97438 * 16 15 14 18 18 C 1.47913 * 125.81661 * 179.97438 * 17 16 15 19 19 N 1.34209 * 126.70288 * 179.71890 * 18 17 16 20 20 N 1.28981 * 107.24703 * 179.83837 * 19 18 17 21 21 N 1.28723 * 109.00204 * 0.42688 * 20 19 18 22 22 H 0.96998 * 125.31597 * 179.75409 * 21 20 19 23 23 N 1.28868 * 109.35802 * 359.72854 * 21 20 19 24 24 N 1.36387 * 108.36027 * 359.73747 * 17 16 15 25 25 H 0.96999 * 125.70927 * 180.27946 * 24 17 16 26 26 H 1.09000 * 109.47184 * 95.81053 * 1 2 3 27 27 H 1.08999 * 109.47287 * 215.80873 * 1 2 3 28 28 H 1.09007 * 109.47250 * 335.81103 * 1 2 3 29 29 H 1.09007 * 109.46802 * 209.99587 * 3 2 1 30 30 H 1.08998 * 109.47320 * 329.99165 * 3 2 1 31 31 H 0.96999 * 120.00331 * 179.97438 * 7 6 4 32 32 H 1.07994 * 126.28398 * 359.96860 * 15 14 12 33 33 H 1.07998 * 126.16889 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0959 2.2417 6 6 3.1269 2.8776 1.6727 7 7 3.5541 3.6176 0.6731 8 14 3.4375 3.4172 3.4338 9 1 2.8596 2.4172 4.3673 10 1 4.9001 3.5248 3.6678 11 1 2.8005 4.7383 3.6665 12 6 2.1389 -1.1672 0.0005 13 8 3.3504 -1.1704 0.1156 14 6 1.4123 -2.4331 -0.1376 15 6 1.9502 -3.6968 0.0012 16 6 0.9216 -4.6137 -0.2094 17 6 -0.2268 -3.9001 -0.4726 18 6 -1.5589 -4.4774 -0.7558 19 7 -2.6894 -3.7998 -1.0090 20 7 -3.6209 -4.6700 -1.2054 21 7 -3.1250 -5.8510 -1.0775 22 1 -3.6193 -6.6801 -1.1730 23 7 -1.8692 -5.7595 -0.8032 24 7 0.0726 -2.5704 -0.4223 25 1 -0.5532 -1.8433 -0.5658 26 1 -0.3633 -0.1040 -1.0224 27 1 -0.3634 -0.8334 0.6013 28 1 -0.3634 0.9375 0.4211 29 1 3.1499 1.1383 -0.5138 30 1 1.6085 2.0284 -0.5139 31 1 4.0310 4.4435 0.8502 32 1 2.9791 -3.9318 0.2300 33 1 1.0093 -5.6895 -0.1721 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825915421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:59 Heat of formation + Delta-G solvation = 128.233621 kcal Electronic energy + Delta-G solvation = -20395.705294 eV Core-core repulsion = 17074.285554 eV Total energy + Delta-G solvation = -3321.419739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.50630 -42.48010 -40.05177 -36.84078 -35.42799 -34.85433 -34.40788 -32.36082 -30.84451 -29.41985 -27.77622 -25.95330 -25.66404 -24.58032 -22.37390 -21.74181 -20.94086 -20.22072 -18.75466 -18.52012 -18.20590 -17.39039 -16.96102 -16.51079 -16.06120 -15.52445 -15.13322 -15.00134 -14.72192 -14.24095 -14.04858 -13.89910 -13.71408 -13.46917 -13.16688 -13.07692 -12.81496 -12.56115 -12.47456 -12.26217 -12.22652 -12.01013 -11.71066 -11.02130 -10.64570 -10.13293 -9.63108 -9.13697 -8.22787 -6.37125 -0.22951 0.17027 0.93698 1.22896 1.37835 1.40499 1.52271 1.86109 1.91746 2.17751 2.40112 2.42430 2.65106 3.07285 3.19378 3.59066 4.00731 4.05504 4.22267 4.30676 4.34909 4.41228 4.69954 4.92132 4.93398 5.14698 5.20683 5.46044 5.56091 5.59994 5.73902 5.80302 6.03557 6.16776 6.57220 6.71001 7.04251 7.18586 7.35670 8.84618 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.003753 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.092575 B = 7459.684341 C = 7822.290713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.605 5.605 3 C 0.260 3.740 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.269 1.269 12 C 0.568 3.432 13 O -0.573 6.573 14 C -0.024 4.024 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.095 3.905 18 C 0.235 3.765 19 N -0.300 5.300 20 N -0.049 5.049 21 N -0.193 5.193 22 H 0.498 0.502 23 N -0.273 5.273 24 N -0.514 5.514 25 H 0.432 0.568 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.004 0.996 30 H 0.033 0.967 31 H 0.268 0.732 32 H 0.158 0.842 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.743 -20.124 -3.460 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.336 5.336 3 C 0.139 3.861 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.194 1.194 12 C 0.357 3.643 13 O -0.453 6.453 14 C -0.142 4.142 15 C -0.145 4.145 16 C -0.160 4.160 17 C -0.025 4.025 18 C -0.046 4.046 19 N -0.173 5.173 20 N -0.044 5.044 21 N -0.045 5.045 22 H 0.358 0.642 23 N -0.126 5.126 24 N -0.118 5.118 25 H 0.280 0.720 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.022 0.978 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.176 0.824 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.842 -19.700 -3.625 25.538 hybrid contribution 0.317 0.592 0.654 0.937 sum -15.525 -19.108 -2.971 24.798 Atomic orbital electron populations 1.22242 0.78903 1.04798 1.02292 1.48084 1.07837 1.06605 1.71077 1.18887 0.91266 0.79534 0.96377 1.21702 1.37035 1.06557 0.92936 0.92977 1.25825 0.94813 0.96361 1.01955 1.70039 1.38834 1.14827 1.32908 0.85361 0.77942 0.78316 0.79134 1.19346 1.20644 1.19375 1.17543 0.86604 0.82897 0.77274 1.90791 1.15120 1.86985 1.52406 1.20430 0.83613 0.95060 1.15049 1.21441 1.00755 0.89184 1.03107 1.21339 0.88878 1.00617 1.05158 1.17151 0.89576 0.83523 1.12233 1.22352 0.93258 0.86397 1.02545 1.76171 0.97304 1.25356 1.18472 1.78837 1.21756 0.88725 1.15095 1.47819 1.04311 1.10887 1.41499 0.64232 1.74967 0.97898 1.19247 1.20518 1.42959 1.08579 1.07444 1.52850 0.71987 0.90177 0.90285 0.89051 0.97753 0.94919 0.92305 0.82391 0.80133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.84 8.79 127.77 1.12 2.97 16 2 N -0.61 -26.27 2.86 -855.95 -2.45 -28.72 16 3 C 0.26 14.01 5.09 85.63 0.44 14.45 16 4 C -0.54 -31.50 9.39 25.60 0.24 -31.26 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.56 5.46 84.66 0.46 1.02 16 7 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 8 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 C 0.57 25.05 7.62 86.43 0.66 25.71 16 13 O -0.57 -30.61 16.53 -4.35 -0.07 -30.68 16 14 C -0.02 -0.82 6.62 40.37 0.27 -0.55 16 15 C -0.12 -3.42 10.61 22.50 0.24 -3.18 16 16 C -0.13 -3.00 10.79 22.43 0.24 -2.76 16 17 C 0.09 2.26 7.12 40.89 0.29 2.55 16 18 C 0.23 5.00 8.21 137.11 1.13 6.12 16 19 N -0.30 -6.61 12.54 -52.40 -0.66 -7.27 16 20 N -0.05 -0.84 13.46 37.02 0.50 -0.34 16 21 N -0.19 -2.04 7.90 37.02 0.29 -1.75 16 22 H 0.50 -0.03 8.96 -347.50 -3.11 -3.14 16 23 N -0.27 -4.44 12.39 -52.36 -0.65 -5.09 16 24 N -0.51 -13.68 5.10 -172.29 -0.88 -14.56 16 25 H 0.43 10.28 4.90 -92.71 -0.45 9.83 16 26 H 0.08 1.95 7.44 -2.39 -0.02 1.93 16 27 H 0.08 2.11 5.68 -2.39 -0.01 2.09 16 28 H 0.09 2.81 8.03 -2.38 -0.02 2.79 16 29 H 0.00 0.27 7.52 -2.38 -0.02 0.25 16 30 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 31 H 0.27 15.06 8.31 -92.71 -0.77 14.28 16 32 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -77.56 297.45 1.11 -76.45 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.38 Total: 5.18 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 5.08 Total: 15.08 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.55 Total: -113.17 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.07 Total: -30.68 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -77.56 1.11 -76.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825915421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.686 kcal (2) G-P(sol) polarization free energy of solvation -77.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds