Wall clock time and date at job start Mon Mar 30 2020 01:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47394 * 2 1 4 4 C 1.50698 * 109.47363 * 240.00122 * 2 1 3 5 5 H 1.08002 * 120.00128 * 240.00316 * 4 2 1 6 6 C 1.37877 * 120.00124 * 60.00094 * 4 2 1 7 7 N 1.31518 * 120.00116 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99991 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47699 * 59.99606 * 8 6 4 10 10 H 1.48501 * 109.47247 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47172 * 299.99473 * 8 6 4 12 12 N 1.46496 * 109.47191 * 119.99940 * 2 1 3 13 13 C 1.46500 * 120.00043 * 59.99879 * 12 2 1 14 14 C 1.34785 * 120.00095 * 240.00034 * 12 2 1 15 15 O 1.21557 * 119.99859 * 5.21556 * 14 12 2 16 16 C 1.47722 * 119.99970 * 185.21319 * 14 12 2 17 17 C 1.39342 * 120.09205 * 22.33817 * 16 14 12 18 18 C 1.39332 * 119.72354 * 179.77190 * 17 16 14 19 19 C 1.43197 * 120.04376 * 180.25150 * 18 17 16 20 20 N 7.37534 * 113.05990 * 142.25791 * 2 1 3 21 21 C 1.39869 * 119.90755 * 0.50424 * 18 17 16 22 22 C 1.37855 * 120.19094 * 359.74892 * 21 18 17 23 23 C 1.38493 * 120.27414 * 359.97438 * 22 21 18 24 24 F 1.35099 * 119.95146 * 179.97438 * 23 22 21 25 25 H 1.08989 * 109.46855 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46972 * 300.00297 * 1 2 3 27 27 H 1.08998 * 109.46822 * 59.99826 * 1 2 3 28 28 H 0.96996 * 120.00277 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.46985 * 84.04750 * 13 12 2 30 30 H 1.08994 * 109.46928 * 324.05257 * 13 12 2 31 31 H 1.08995 * 109.47487 * 204.04537 * 13 12 2 32 32 H 1.07997 * 120.13921 * 359.97438 * 17 16 14 33 33 H 1.08005 * 119.90197 * 179.72312 * 21 18 17 34 34 H 1.07999 * 119.85766 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -2.5202 -4.0078 10 1 1.8262 -0.4206 -5.2205 11 1 3.8066 -1.1208 -4.0081 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0834 15 8 3.0090 1.1523 1.9413 16 6 3.3803 -0.7611 3.2284 17 6 3.5438 -2.1437 3.1698 18 6 4.1028 -2.8197 4.2524 19 6 4.2790 -4.2397 4.1974 20 7 4.4189 -5.3662 4.1538 21 6 4.4866 -2.1100 5.3949 22 6 4.3182 -0.7430 5.4510 23 6 3.7688 -0.0625 4.3772 24 9 3.6063 1.2773 4.4395 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7088 1.1613 -3.4844 29 1 2.3553 -2.7370 0.8837 30 1 0.6478 -2.2738 1.0788 31 1 1.7269 -2.3122 2.4939 32 1 3.2417 -2.6885 2.2877 33 1 4.9157 -2.6347 6.2358 34 1 4.6161 -0.2004 6.3361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826099534.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:12 Heat of formation + Delta-G solvation = -17.244117 kcal Electronic energy + Delta-G solvation = -20846.772852 eV Core-core repulsion = 17466.832012 eV Total energy + Delta-G solvation = -3379.940840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.01008 -41.44736 -39.67671 -37.43628 -37.24051 -35.03902 -32.99354 -32.10732 -30.80505 -28.09491 -27.31056 -25.39591 -24.62034 -23.15993 -21.17427 -19.34895 -18.54298 -18.49275 -18.08650 -17.36198 -17.10058 -16.81849 -16.13483 -15.95902 -15.40930 -15.00957 -14.96300 -14.77023 -14.71100 -14.40043 -14.02628 -13.62110 -13.49689 -13.45649 -13.24621 -12.97664 -12.78925 -12.73589 -12.69054 -12.23092 -12.14403 -12.01154 -11.19784 -10.83675 -10.51858 -10.22627 -9.90110 -9.39674 -8.14972 -6.31911 -0.57718 -0.20230 1.42407 1.44433 1.49139 1.52328 1.58065 2.08203 2.17869 2.44758 2.65809 2.75273 3.05352 3.13327 3.40772 3.60290 3.93209 4.07399 4.25610 4.48623 4.59055 4.64129 4.73989 4.84592 4.88318 4.92532 4.94938 5.03018 5.06364 5.44665 5.53275 5.58360 5.64412 6.00447 6.13333 6.41526 6.69031 6.74898 7.21846 7.41588 8.89397 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.005417 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.537516 B = 5167.757500 C = 6110.169536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.262 3.738 3 H 0.011 0.989 4 C -0.540 4.540 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.262 1.262 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.590 5.590 13 C 0.062 3.938 14 C 0.534 3.466 15 O -0.590 6.590 16 C -0.183 4.183 17 C -0.025 4.025 18 C -0.045 4.045 19 C 0.284 3.716 20 N -0.449 5.449 21 C 0.007 3.993 22 C -0.144 4.144 23 C 0.164 3.836 24 F -0.133 7.133 25 H 0.050 0.950 26 H 0.019 0.981 27 H 0.069 0.931 28 H 0.265 0.735 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.192 0.808 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.960 -8.285 17.230 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.029 0.971 4 C -0.578 4.578 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.187 1.187 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.319 5.319 13 C -0.079 4.079 14 C 0.323 3.677 15 O -0.473 6.473 16 C -0.187 4.187 17 C -0.045 4.045 18 C -0.049 4.049 19 C -0.031 4.031 20 N -0.125 5.125 21 C -0.013 4.013 22 C -0.162 4.162 23 C 0.142 3.858 24 F -0.111 7.111 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.187 0.813 33 H 0.209 0.791 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.149 -9.270 16.910 19.959 hybrid contribution -0.096 0.930 -1.446 1.722 sum 5.052 -8.340 15.463 18.281 Atomic orbital electron populations 1.21885 0.97000 1.00311 1.00051 1.18601 0.91836 0.92296 0.81224 0.97100 1.21529 1.32160 1.13241 0.90897 0.91748 1.25722 0.95020 0.95601 1.01986 1.70015 1.37133 1.23834 1.24540 0.85516 0.78406 0.78981 0.78154 1.18694 1.21018 1.20256 1.48113 1.48268 1.13398 1.22107 1.22550 1.02340 0.80723 1.02304 1.18684 0.79423 0.86502 0.83049 1.90754 1.62854 1.17107 1.76542 1.19836 1.08816 0.94925 0.95124 1.22157 0.91687 0.91318 0.99369 1.15821 1.07225 0.84606 0.97240 1.25373 0.92701 0.92087 0.92907 1.81329 1.09876 1.12925 1.08357 1.21619 0.91195 0.92298 0.96159 1.21381 1.01519 0.94888 0.98415 1.18441 0.95821 0.77215 0.94291 1.91567 1.92442 1.30670 1.96403 0.93075 0.96161 0.91248 0.92601 0.91096 0.90667 0.87843 0.81283 0.79125 0.79426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 8.93 71.98 0.64 -5.77 16 2 C 0.26 13.55 2.63 44.25 0.12 13.66 16 3 H 0.01 0.69 6.91 -2.39 -0.02 0.67 16 4 C -0.54 -28.81 8.37 25.60 0.21 -28.60 16 5 H 0.06 3.28 7.48 -2.91 -0.02 3.26 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -52.49 11.32 21.45 0.24 -52.25 16 8 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 9 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 N -0.59 -24.58 2.75 -830.37 -2.29 -26.87 16 13 C 0.06 1.85 7.97 127.77 1.02 2.87 16 14 C 0.53 22.37 7.48 86.75 0.65 23.02 16 15 O -0.59 -30.67 14.99 -3.90 -0.06 -30.73 16 16 C -0.18 -5.28 5.55 -20.09 -0.11 -5.39 16 17 C -0.02 -0.52 7.25 22.80 0.17 -0.36 16 18 C -0.05 -0.67 5.73 -21.38 -0.12 -0.80 16 19 C 0.28 5.02 15.32 88.33 1.35 6.37 16 20 N -0.45 -10.28 18.54 19.00 0.35 -9.93 16 21 C 0.01 0.07 9.74 22.57 0.22 0.29 16 22 C -0.14 -1.82 10.00 22.24 0.22 -1.60 16 23 C 0.16 4.05 7.26 22.75 0.17 4.21 16 24 F -0.13 -4.24 15.79 44.97 0.71 -3.53 16 25 H 0.05 2.19 6.70 -2.39 -0.02 2.17 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.07 1.95 7.00 -2.38 -0.02 1.93 16 30 H 0.07 2.24 6.46 -2.39 -0.02 2.22 16 31 H 0.10 2.30 4.98 -2.39 -0.01 2.29 16 32 H 0.17 3.52 4.21 -2.91 -0.01 3.51 16 33 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 34 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -74.49 298.14 7.13 -67.37 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.16 Total: 2.11 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 4.98 Total: 9.25 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -1.69 Total: -89.04 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.06 Total: -30.73 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.71 Total: -3.53 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -74.49 7.13 -67.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826099534.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.121 kcal (2) G-P(sol) polarization free energy of solvation -74.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds