Wall clock time and date at job start Mon Mar 30 2020 01:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37977 * 119.87895 * 2 1 4 4 C 1.38248 * 120.35086 * 179.73133 * 3 2 1 5 5 C 1.38395 * 119.76553 * 0.08874 * 4 3 2 6 6 C 1.37698 * 119.98165 * 359.97438 * 5 4 3 7 7 C 1.38929 * 120.77666 * 0.37936 * 6 5 4 8 8 O 1.36138 * 111.20935 * 178.96833 * 7 6 5 9 9 C 1.43785 * 109.20419 * 19.35229 * 8 7 6 10 10 H 1.09001 * 110.74562 * 90.42324 * 9 8 7 11 11 C 1.50702 * 110.74926 * 213.58951 * 9 8 7 12 12 O 1.20818 * 120.00180 * 3.55249 * 11 9 8 13 13 O 1.34234 * 119.99681 * 183.54470 * 11 9 8 14 14 C 1.45203 * 116.99771 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.47294 * 330.00512 * 14 13 11 16 16 C 1.53004 * 109.46685 * 90.00296 * 14 13 11 17 17 C 1.50691 * 109.47146 * 210.00209 * 14 13 11 18 18 H 1.08000 * 120.00394 * 0.02562 * 17 14 13 19 19 C 1.37883 * 120.00094 * 180.02562 * 17 14 13 20 20 N 1.31509 * 119.99856 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00077 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47172 * 60.00243 * 21 19 17 23 23 H 1.48496 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46923 * 300.00378 * 21 19 17 25 25 C 1.51636 * 132.18013 * 180.90037 * 6 5 4 26 26 H 1.08998 * 109.47499 * 89.99752 * 1 2 3 27 27 H 1.09004 * 109.46839 * 209.99788 * 1 2 3 28 28 H 1.09000 * 109.47258 * 329.98786 * 1 2 3 29 29 H 1.08002 * 119.82804 * 0.02562 * 3 2 1 30 30 H 1.07993 * 120.11503 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.01142 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47078 * 60.00084 * 16 14 13 33 33 H 1.08993 * 109.46938 * 179.97438 * 16 14 13 34 34 H 1.09001 * 109.47090 * 300.00251 * 16 14 13 35 35 H 0.96998 * 120.00185 * 179.97438 * 20 19 17 36 36 H 1.09003 * 110.94187 * 282.55299 * 25 6 5 37 37 H 1.08998 * 110.93732 * 46.22871 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2078 0.0056 5 6 4.2737 0.0121 0.0094 6 6 3.5897 -1.1830 0.0081 7 6 2.2007 -1.2072 -0.0049 8 8 1.7305 -2.4846 -0.0267 9 6 2.7653 -3.3772 0.4205 10 1 2.7128 -3.5192 1.5000 11 6 2.6751 -4.7004 -0.2950 12 8 1.8509 -4.8626 -1.1634 13 8 3.5106 -5.6987 0.0324 14 6 3.3661 -6.9454 -0.6979 15 1 2.3268 -7.0703 -1.0016 16 6 4.2601 -6.9157 -1.9393 17 6 3.7727 -8.0957 0.1865 18 1 4.1060 -7.9087 1.1967 19 6 3.7194 -9.3870 -0.2938 20 7 3.3141 -9.6148 -1.5240 21 14 4.2227 -10.8130 0.8028 22 1 3.3542 -10.8421 2.0070 23 1 4.0763 -12.0879 0.0555 24 1 5.6384 -10.6427 1.2177 25 6 4.0591 -2.6248 0.0289 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5140 29 1 1.6495 2.1289 0.0004 30 1 4.1109 2.1464 0.0060 31 1 5.3537 0.0164 0.0133 32 1 5.2995 -6.7908 -1.6356 33 1 4.1521 -7.8516 -2.4873 34 1 3.9660 -6.0836 -2.5790 35 1 3.2769 -10.5232 -1.8621 36 1 4.4073 -2.9354 -0.9562 37 1 4.8365 -2.7705 0.7789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835158728.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:40 Heat of formation + Delta-G solvation = -97.152932 kcal Electronic energy + Delta-G solvation = -20923.119438 eV Core-core repulsion = 17630.881046 eV Total energy + Delta-G solvation = -3292.238392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41671 -39.42597 -37.60604 -35.71020 -33.72682 -33.29898 -31.24395 -30.20647 -29.25493 -26.89391 -25.38142 -24.71488 -22.34237 -21.63440 -20.91163 -19.76715 -17.74217 -17.24595 -16.92464 -16.34737 -16.01315 -15.51958 -14.93752 -14.69409 -14.18294 -13.99308 -13.64554 -13.32140 -13.17934 -12.98967 -12.63697 -12.39664 -12.21897 -12.10676 -11.68392 -11.58687 -11.34284 -11.14335 -11.09090 -10.89502 -10.88500 -10.45165 -10.32277 -9.71686 -9.60700 -8.98785 -8.81887 -8.53830 -8.18239 -6.22645 -4.30385 1.14424 1.24199 2.61500 2.82643 3.24153 3.27957 3.30789 3.50001 3.78254 4.26931 4.36273 4.50768 4.70466 4.81337 4.98583 5.09701 5.10522 5.13792 5.33983 5.42979 5.52388 5.58496 5.65714 5.70062 5.80320 6.09803 6.23283 6.27113 6.37409 6.48797 6.56563 6.82050 6.83451 7.04878 7.08546 7.53060 7.65602 7.85829 8.06683 8.51366 8.79708 9.35074 10.84769 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039039 B = 0.003644 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.063365 B = 7682.980537 C = 7914.015441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C -0.089 4.089 4 C -0.147 4.147 5 C -0.074 4.074 6 C -0.167 4.167 7 C 0.107 3.893 8 O -0.274 6.274 9 C 0.089 3.911 10 H 0.122 0.878 11 C 0.457 3.543 12 O -0.496 6.496 13 O -0.349 6.349 14 C 0.216 3.784 15 H 0.048 0.952 16 C -0.156 4.156 17 C -0.524 4.524 18 H 0.070 0.930 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.914 3.086 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.094 4.094 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.038 0.962 33 H 0.101 0.899 34 H 0.016 0.984 35 H 0.268 0.732 36 H 0.098 0.902 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 19.510 4.131 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.107 4.107 4 C -0.165 4.165 5 C -0.092 4.092 6 C -0.168 4.168 7 C 0.062 3.938 8 O -0.187 6.187 9 C 0.032 3.968 10 H 0.139 0.861 11 C 0.297 3.703 12 O -0.384 6.384 13 O -0.266 6.266 14 C 0.164 3.836 15 H 0.066 0.934 16 C -0.213 4.213 17 C -0.562 4.562 18 H 0.088 0.912 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.741 3.259 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.131 4.131 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.257 19.128 3.654 19.476 hybrid contribution 0.353 -0.910 0.347 1.036 sum 0.609 18.218 4.002 18.662 Atomic orbital electron populations 1.20695 0.90567 1.02836 1.02575 1.19125 0.96463 0.89355 1.05331 1.20761 0.94217 0.96403 0.99357 1.20993 0.94084 0.97670 1.03767 1.20283 0.99877 0.90371 0.98659 1.20778 0.93651 0.95380 1.06962 1.19437 0.91918 0.85375 0.97082 1.86933 1.37115 1.12906 1.81773 1.22699 0.86816 0.87627 0.99706 0.86079 1.22559 0.79942 0.86063 0.81709 1.90650 1.35558 1.81998 1.30197 1.86468 1.54259 1.23931 1.61905 1.20736 0.97853 0.75301 0.89669 0.93389 1.22179 0.98768 1.02204 0.98193 1.20968 1.46117 0.89397 0.99684 0.91214 1.24894 0.94788 0.98729 0.95514 1.69883 1.46022 1.21579 1.15116 0.86295 0.79220 0.80332 0.80068 1.19925 1.20997 1.19887 1.21669 0.96993 0.89632 1.04787 0.91183 0.91177 0.91541 0.85236 0.85484 0.85618 0.94267 0.88055 0.96486 0.92234 0.88415 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.98 36.00 0.36 -0.80 16 2 C -0.10 -1.26 5.90 -104.35 -0.62 -1.87 16 3 C -0.09 -0.89 9.66 -39.67 -0.38 -1.27 16 4 C -0.15 -1.39 10.07 -39.52 -0.40 -1.79 16 5 C -0.07 -0.79 10.03 -39.72 -0.40 -1.19 16 6 C -0.17 -2.20 6.27 -104.10 -0.65 -2.86 16 7 C 0.11 1.58 6.73 -38.96 -0.26 1.32 16 8 O -0.27 -4.76 10.28 -39.27 -0.40 -5.17 16 9 C 0.09 1.46 4.15 -26.99 -0.11 1.35 16 10 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 11 C 0.46 9.78 7.24 36.01 0.26 10.04 16 12 O -0.50 -12.35 15.79 -25.23 -0.40 -12.75 16 13 O -0.35 -8.16 9.86 -39.27 -0.39 -8.55 16 14 C 0.22 5.79 2.56 -27.89 -0.07 5.72 16 15 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 16 C -0.16 -3.92 9.33 37.16 0.35 -3.57 16 17 C -0.52 -14.55 8.90 -34.44 -0.31 -14.85 16 18 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 21 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C -0.09 -1.28 6.64 -26.53 -0.18 -1.45 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 28 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.10 1.40 7.92 -51.93 -0.41 0.99 16 37 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -31.68 319.11 -8.14 -39.82 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.86 Total: 0.09 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -2.50 Total: -9.60 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.63 Total: -24.48 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -1.19 Total: -26.47 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.68 -8.14 -39.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158728.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.337 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds