Wall clock time and date at job start Mon Mar 30 2020 01:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37977 * 119.87895 * 2 1 4 4 C 1.38248 * 120.35086 * 179.73133 * 3 2 1 5 5 C 1.38395 * 119.76553 * 0.08874 * 4 3 2 6 6 C 1.37698 * 119.98165 * 359.97438 * 5 4 3 7 7 C 1.38929 * 120.77666 * 0.37936 * 6 5 4 8 8 O 1.36138 * 111.20935 * 178.96833 * 7 6 5 9 9 C 1.43785 * 109.20419 * 19.35229 * 8 7 6 10 10 H 1.09001 * 110.74562 * 90.42324 * 9 8 7 11 11 C 1.50702 * 110.74926 * 213.58951 * 9 8 7 12 12 O 1.20818 * 120.00180 * 3.55249 * 11 9 8 13 13 O 1.34234 * 119.99681 * 183.54470 * 11 9 8 14 14 C 1.45203 * 116.99771 * 179.97438 * 13 11 9 15 15 H 1.09000 * 109.47294 * 330.00512 * 14 13 11 16 16 C 1.53004 * 109.46685 * 90.00296 * 14 13 11 17 17 C 1.50691 * 109.47146 * 210.00209 * 14 13 11 18 18 H 1.08000 * 120.00394 * 0.02562 * 17 14 13 19 19 C 1.37883 * 120.00094 * 180.02562 * 17 14 13 20 20 N 1.31509 * 119.99856 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00077 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47172 * 60.00243 * 21 19 17 23 23 H 1.48496 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46923 * 300.00378 * 21 19 17 25 25 C 1.51636 * 132.18013 * 180.90037 * 6 5 4 26 26 H 1.08998 * 109.47499 * 89.99752 * 1 2 3 27 27 H 1.09004 * 109.46839 * 209.99788 * 1 2 3 28 28 H 1.09000 * 109.47258 * 329.98786 * 1 2 3 29 29 H 1.08002 * 119.82804 * 0.02562 * 3 2 1 30 30 H 1.07993 * 120.11503 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.01142 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47078 * 60.00084 * 16 14 13 33 33 H 1.08993 * 109.46938 * 179.97438 * 16 14 13 34 34 H 1.09001 * 109.47090 * 300.00251 * 16 14 13 35 35 H 0.96998 * 120.00185 * 179.97438 * 20 19 17 36 36 H 1.09003 * 110.94187 * 282.55299 * 25 6 5 37 37 H 1.08998 * 110.93732 * 46.22871 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2078 0.0056 5 6 4.2737 0.0121 0.0094 6 6 3.5897 -1.1830 0.0081 7 6 2.2007 -1.2072 -0.0049 8 8 1.7305 -2.4846 -0.0267 9 6 2.7653 -3.3772 0.4205 10 1 2.7128 -3.5192 1.5000 11 6 2.6751 -4.7004 -0.2950 12 8 1.8509 -4.8626 -1.1634 13 8 3.5106 -5.6987 0.0324 14 6 3.3661 -6.9454 -0.6979 15 1 2.3268 -7.0703 -1.0016 16 6 4.2601 -6.9157 -1.9393 17 6 3.7727 -8.0957 0.1865 18 1 4.1060 -7.9087 1.1967 19 6 3.7194 -9.3870 -0.2938 20 7 3.3141 -9.6148 -1.5240 21 14 4.2227 -10.8130 0.8028 22 1 3.3542 -10.8421 2.0070 23 1 4.0763 -12.0879 0.0555 24 1 5.6384 -10.6427 1.2177 25 6 4.0591 -2.6248 0.0289 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5140 29 1 1.6495 2.1289 0.0004 30 1 4.1109 2.1464 0.0060 31 1 5.3537 0.0164 0.0133 32 1 5.2995 -6.7908 -1.6356 33 1 4.1521 -7.8516 -2.4873 34 1 3.9660 -6.0836 -2.5790 35 1 3.2769 -10.5232 -1.8621 36 1 4.4073 -2.9354 -0.9562 37 1 4.8365 -2.7705 0.7789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835158728.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:40 Heat of formation + Delta-G solvation = -114.387344 kcal Electronic energy + Delta-G solvation = -20923.866778 eV Core-core repulsion = 17630.881046 eV Total energy + Delta-G solvation = -3292.985733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.57712 -41.12151 -38.65311 -37.59349 -35.42615 -34.62042 -32.34813 -31.79218 -30.72368 -27.72547 -27.49942 -26.02813 -23.67636 -23.00669 -21.87074 -21.54263 -19.21826 -18.93648 -18.15267 -17.80795 -17.69800 -16.91640 -16.53221 -16.24005 -15.45323 -15.06679 -14.80227 -14.58629 -14.33645 -14.27521 -14.11099 -13.82303 -13.61141 -13.27952 -13.19351 -13.07107 -12.87675 -12.83668 -12.43085 -12.41240 -12.21500 -12.18525 -11.76876 -11.69638 -11.40859 -11.06988 -10.62928 -9.66305 -9.14942 -8.31353 -6.49307 0.28710 0.36198 1.01604 1.27339 1.43834 1.46304 1.55520 2.31526 2.44915 2.73332 2.99598 3.20941 3.41741 3.71466 3.79530 3.88441 4.06255 4.28080 4.40611 4.45485 4.46665 4.57924 4.67907 4.72694 4.75115 4.76188 4.78219 4.95895 5.05150 5.25825 5.39895 5.43444 5.45456 5.53623 5.55259 5.62249 5.82674 5.97416 6.14048 6.53797 6.78168 7.21973 8.76414 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.039039 B = 0.003644 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.063365 B = 7682.980537 C = 7914.015441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.115 4.115 3 C -0.086 4.086 4 C -0.136 4.136 5 C -0.076 4.076 6 C -0.177 4.177 7 C 0.063 3.937 8 O -0.305 6.305 9 C 0.094 3.906 10 H 0.148 0.852 11 C 0.454 3.546 12 O -0.539 6.539 13 O -0.347 6.347 14 C 0.217 3.783 15 H 0.006 0.994 16 C -0.143 4.143 17 C -0.550 4.550 18 H 0.073 0.927 19 C 0.016 3.984 20 N -0.918 5.918 21 Si 0.986 3.014 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.261 1.261 25 C -0.087 4.087 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.152 0.848 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.021 0.979 35 H 0.272 0.728 36 H 0.084 0.916 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 21.640 5.577 22.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.116 4.116 3 C -0.104 4.104 4 C -0.153 4.153 5 C -0.094 4.094 6 C -0.178 4.178 7 C 0.019 3.981 8 O -0.220 6.220 9 C 0.037 3.963 10 H 0.166 0.834 11 C 0.297 3.703 12 O -0.429 6.429 13 O -0.264 6.264 14 C 0.164 3.836 15 H 0.024 0.976 16 C -0.200 4.200 17 C -0.588 4.588 18 H 0.091 0.909 19 C -0.184 4.184 20 N -0.556 5.556 21 Si 0.809 3.191 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.124 4.124 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.181 0.819 30 H 0.182 0.818 31 H 0.169 0.831 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.863 21.295 5.107 21.978 hybrid contribution -0.197 -1.410 -0.144 1.431 sum 1.666 19.886 4.963 20.563 Atomic orbital electron populations 1.20719 0.89990 1.03305 1.02611 1.19525 0.97326 0.89458 1.05258 1.21200 0.94851 0.96573 0.97771 1.21489 0.94051 0.98641 1.01150 1.20674 1.01322 0.89746 0.97675 1.20856 0.93097 0.95747 1.08067 1.19854 0.93218 0.84835 1.00180 1.86873 1.37860 1.14494 1.82770 1.22785 0.88603 0.84951 0.99933 0.83439 1.23652 0.78408 0.87081 0.81129 1.90620 1.37148 1.82831 1.32344 1.86452 1.54882 1.23522 1.61507 1.20474 0.95661 0.76899 0.90570 0.97623 1.21999 0.99198 1.01362 0.97485 1.21264 1.47123 0.90307 1.00078 0.90908 1.25877 0.94193 1.01379 0.96928 1.70013 1.46297 1.22442 1.16799 0.85179 0.79366 0.76506 0.78042 1.19292 1.20331 1.18529 1.21665 0.96017 0.89852 1.04879 0.91352 0.93133 0.88622 0.81949 0.81838 0.83050 0.92903 0.89886 0.96028 0.91890 0.89768 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 9.98 71.23 0.71 -1.53 16 2 C -0.12 -2.69 5.90 -19.69 -0.12 -2.81 16 3 C -0.09 -1.42 9.66 22.21 0.21 -1.20 16 4 C -0.14 -1.99 10.07 22.31 0.22 -1.77 16 5 C -0.08 -1.39 10.03 22.18 0.22 -1.17 16 6 C -0.18 -4.44 6.27 -19.53 -0.12 -4.56 16 7 C 0.06 1.86 6.73 22.68 0.15 2.02 16 8 O -0.31 -11.05 10.28 -76.87 -0.79 -11.84 16 9 C 0.09 3.15 4.15 30.43 0.13 3.28 16 10 H 0.15 4.05 8.14 -2.39 -0.02 4.03 16 11 C 0.45 20.32 7.24 71.24 0.52 20.84 16 12 O -0.54 -28.56 15.79 28.19 0.45 -28.11 16 13 O -0.35 -16.76 9.86 -51.46 -0.51 -17.27 16 14 C 0.22 12.06 2.56 29.85 0.08 12.14 16 15 H 0.01 0.37 7.16 -2.39 -0.02 0.36 16 16 C -0.14 -7.41 9.33 71.98 0.67 -6.74 16 17 C -0.55 -31.12 8.90 25.60 0.23 -30.89 16 18 H 0.07 3.97 7.81 -2.91 -0.02 3.94 16 19 C 0.02 0.88 5.30 84.66 0.45 1.33 16 20 N -0.92 -52.90 11.32 21.45 0.24 -52.66 16 21 Si 0.99 42.49 29.54 68.60 2.03 44.51 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 25 C -0.09 -2.32 6.64 30.73 0.20 -2.12 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.21 8.02 -2.38 -0.02 1.19 16 28 H 0.10 1.33 8.08 -2.39 -0.02 1.31 16 29 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 30 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 31 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.08 4.62 6.07 -2.39 -0.01 4.60 16 34 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.08 2.44 7.92 -2.39 -0.02 2.42 16 37 H 0.14 2.74 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -72.00 319.11 6.04 -65.96 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.07 Total: 12.60 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 3.56 Total: -13.18 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.24 Total: -52.66 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -0.85 Total: -57.22 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -72.00 6.04 -65.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158728.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.432 kcal (2) G-P(sol) polarization free energy of solvation -71.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds