Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37977 * 119.87708 * 2 1 4 4 C 1.38245 * 120.35188 * 180.02562 * 3 2 1 5 5 C 1.38400 * 119.76480 * 0.16402 * 4 3 2 6 6 C 1.37691 * 119.97752 * 0.02562 * 5 4 3 7 7 C 1.38926 * 120.78675 * 359.64559 * 6 5 4 8 8 O 1.36132 * 111.21313 * 181.00792 * 7 6 5 9 9 C 1.43785 * 109.20620 * 340.65343 * 8 7 6 10 10 H 1.08994 * 110.74785 * 269.56913 * 9 8 7 11 11 C 1.50703 * 110.90424 * 146.29178 * 9 8 7 12 12 O 1.20825 * 120.00434 * 1.54977 * 11 9 8 13 13 O 1.34228 * 119.99730 * 181.54448 * 11 9 8 14 14 C 1.45198 * 117.00287 * 180.02562 * 13 11 9 15 15 H 1.09007 * 109.46637 * 329.99978 * 14 13 11 16 16 C 1.52998 * 109.47155 * 89.99721 * 14 13 11 17 17 C 1.50695 * 109.47326 * 209.99945 * 14 13 11 18 18 H 1.08004 * 120.00345 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00159 * 179.97438 * 17 14 13 20 20 N 1.31518 * 119.99952 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00194 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47067 * 60.00414 * 21 19 17 23 23 H 1.48493 * 109.47190 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47364 * 300.00639 * 21 19 17 25 25 C 1.51649 * 132.17413 * 179.10169 * 6 5 4 26 26 H 1.08994 * 109.46785 * 90.00282 * 1 2 3 27 27 H 1.09003 * 109.46602 * 209.99721 * 1 2 3 28 28 H 1.08994 * 109.47230 * 329.99649 * 1 2 3 29 29 H 1.08002 * 119.82726 * 0.02562 * 3 2 1 30 30 H 1.07992 * 120.11793 * 179.88645 * 4 3 2 31 31 H 1.07996 * 120.00815 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.47138 * 60.00564 * 16 14 13 33 33 H 1.09001 * 109.46971 * 179.97438 * 16 14 13 34 34 H 1.08996 * 109.47213 * 300.00579 * 16 14 13 35 35 H 0.96996 * 120.00057 * 179.97438 * 20 19 17 36 36 H 1.09003 * 110.93369 * 313.79731 * 25 6 5 37 37 H 1.09003 * 110.93542 * 77.46744 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1964 0.0000 4 6 3.5768 1.2078 -0.0005 5 6 4.2738 0.0122 -0.0045 6 6 3.5898 -1.1829 -0.0084 7 6 2.2008 -1.2072 -0.0011 8 8 1.7307 -2.4847 0.0156 9 6 2.7673 -3.3761 -0.4295 10 1 2.7192 -3.5156 -1.5094 11 6 2.6792 -4.7014 0.2824 12 8 1.7961 -4.8997 1.0829 13 8 3.5817 -5.6616 0.0271 14 6 3.4351 -6.9129 0.7490 15 1 2.9806 -6.7204 1.7210 16 6 2.5424 -7.8625 -0.0523 17 6 4.7904 -7.5421 0.9440 18 1 5.6738 -7.0507 0.5637 19 6 4.9030 -8.7448 1.6087 20 7 3.8274 -9.3431 2.0722 21 14 6.5831 -9.5245 1.8510 22 1 7.4492 -8.6025 2.6287 23 1 6.4331 -10.8042 2.5892 24 1 7.2027 -9.7869 0.5271 25 6 4.0594 -2.6246 -0.0309 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6495 2.1289 0.0004 30 1 4.1109 2.1464 -0.0024 31 1 5.3537 0.0165 -0.0045 32 1 2.9969 -8.0549 -1.0242 33 1 2.4328 -8.8019 0.4894 34 1 1.5621 -7.4073 -0.1933 35 1 3.9065 -10.1894 2.5395 36 1 4.8399 -2.7685 -0.7780 37 1 4.4036 -2.9375 0.9549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835158729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = -97.100907 kcal Electronic energy + Delta-G solvation = -20932.295378 eV Core-core repulsion = 17640.059242 eV Total energy + Delta-G solvation = -3292.236136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40290 -39.42406 -37.59574 -35.71139 -33.71935 -33.29376 -31.23377 -30.19922 -29.23603 -26.88260 -25.39258 -24.69472 -22.32532 -21.61619 -20.89809 -19.79469 -17.68028 -17.24639 -16.83499 -16.50110 -15.99097 -15.47769 -14.97711 -14.69309 -14.15564 -13.93178 -13.64582 -13.32172 -13.16165 -12.94365 -12.62544 -12.39695 -12.33438 -11.89624 -11.81206 -11.57996 -11.27286 -11.18433 -11.06458 -10.91739 -10.84980 -10.44946 -10.32371 -9.71280 -9.60583 -8.98743 -8.80279 -8.53896 -8.16855 -6.22796 -4.30599 1.16203 1.25263 2.65718 2.78424 3.23711 3.27693 3.30458 3.50930 3.79543 4.27017 4.38184 4.52334 4.71932 4.82733 4.98921 5.10179 5.11437 5.14988 5.35786 5.44410 5.53121 5.57660 5.69236 5.72241 5.84107 6.11163 6.25048 6.28668 6.38842 6.49894 6.57238 6.83004 6.84359 7.05331 7.09495 7.52947 7.65902 7.85781 8.06628 8.51292 8.79424 9.34874 10.84626 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.032320 B = 0.003890 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.119636 B = 7196.595427 C = 7827.920813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C -0.090 4.090 4 C -0.147 4.147 5 C -0.074 4.074 6 C -0.166 4.166 7 C 0.107 3.893 8 O -0.275 6.275 9 C 0.090 3.910 10 H 0.121 0.879 11 C 0.457 3.543 12 O -0.496 6.496 13 O -0.349 6.349 14 C 0.216 3.784 15 H 0.048 0.952 16 C -0.156 4.156 17 C -0.523 4.523 18 H 0.070 0.930 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.914 3.086 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.095 4.095 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.038 0.962 33 H 0.101 0.899 34 H 0.017 0.983 35 H 0.268 0.732 36 H 0.107 0.893 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 18.529 -6.104 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.108 4.108 4 C -0.165 4.165 5 C -0.092 4.092 6 C -0.167 4.167 7 C 0.061 3.939 8 O -0.188 6.188 9 C 0.032 3.968 10 H 0.139 0.861 11 C 0.297 3.703 12 O -0.384 6.384 13 O -0.265 6.265 14 C 0.164 3.836 15 H 0.066 0.934 16 C -0.214 4.214 17 C -0.561 4.561 18 H 0.088 0.912 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.741 3.259 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.132 4.132 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.036 0.964 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.556 18.122 -5.679 19.054 hybrid contribution 0.860 -0.632 0.212 1.088 sum -0.696 17.490 -5.466 18.338 Atomic orbital electron populations 1.20701 0.90595 1.03052 1.02380 1.19117 0.96435 0.89342 1.05392 1.20758 0.94219 0.96394 0.99416 1.20996 0.94080 0.97676 1.03743 1.20290 0.99912 0.90372 0.98614 1.20801 0.93647 0.95456 1.06808 1.19434 0.91932 0.85354 0.97169 1.86917 1.36936 1.12958 1.81984 1.22677 0.86813 0.87709 0.99557 0.86132 1.22573 0.80930 0.85902 0.80893 1.90652 1.34183 1.80873 1.32727 1.86466 1.49820 1.25918 1.64345 1.20736 0.97438 0.74384 0.91001 0.93411 1.22183 0.96026 1.02976 1.00217 1.20962 0.91709 1.05897 1.37572 0.91222 1.24893 0.97818 0.96375 0.94831 1.69887 1.28145 1.17492 1.37061 0.86301 0.82797 0.78346 0.78502 1.19943 1.20993 1.19883 1.21694 0.96981 0.89500 1.04994 0.91286 0.91033 0.91557 0.85252 0.85492 0.85590 0.94258 0.88062 0.96410 0.92235 0.87426 0.88180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.98 36.01 0.36 -0.81 16 2 C -0.10 -1.27 5.90 -104.34 -0.62 -1.88 16 3 C -0.09 -0.90 9.66 -39.67 -0.38 -1.29 16 4 C -0.15 -1.42 10.07 -39.52 -0.40 -1.81 16 5 C -0.07 -0.81 10.03 -39.72 -0.40 -1.21 16 6 C -0.17 -2.23 6.27 -104.10 -0.65 -2.89 16 7 C 0.11 1.58 6.73 -38.96 -0.26 1.32 16 8 O -0.27 -4.77 10.27 -39.17 -0.40 -5.17 16 9 C 0.09 1.47 4.15 -26.99 -0.11 1.36 16 10 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 11 C 0.46 9.77 7.23 36.01 0.26 10.03 16 12 O -0.50 -12.35 15.80 -25.22 -0.40 -12.75 16 13 O -0.35 -8.14 9.86 -39.25 -0.39 -8.53 16 14 C 0.22 5.78 2.56 -27.89 -0.07 5.71 16 15 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 16 C -0.16 -3.95 9.33 37.16 0.35 -3.60 16 17 C -0.52 -14.48 8.90 -34.44 -0.31 -14.78 16 18 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -25.07 11.32 55.43 0.63 -24.45 16 21 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 C -0.09 -1.32 6.63 -26.52 -0.18 -1.50 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 28 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.50 7.92 -51.93 -0.41 1.09 16 LS Contribution 319.08 15.07 4.81 4.81 Total: -1.00 -31.57 319.08 -8.14 -39.71 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.86 Total: 0.33 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.50 Total: -9.73 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.63 Total: -24.45 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.19 Total: -26.45 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.57 -8.14 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.388 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds