Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37977 * 119.87708 * 2 1 4 4 C 1.38245 * 120.35188 * 180.02562 * 3 2 1 5 5 C 1.38400 * 119.76480 * 0.16402 * 4 3 2 6 6 C 1.37691 * 119.97752 * 0.02562 * 5 4 3 7 7 C 1.38926 * 120.78675 * 359.64559 * 6 5 4 8 8 O 1.36132 * 111.21313 * 181.00792 * 7 6 5 9 9 C 1.43785 * 109.20620 * 340.65343 * 8 7 6 10 10 H 1.08994 * 110.74785 * 269.56913 * 9 8 7 11 11 C 1.50703 * 110.90424 * 146.29178 * 9 8 7 12 12 O 1.20825 * 120.00434 * 1.54977 * 11 9 8 13 13 O 1.34228 * 119.99730 * 181.54448 * 11 9 8 14 14 C 1.45198 * 117.00287 * 180.02562 * 13 11 9 15 15 H 1.09007 * 109.46637 * 329.99978 * 14 13 11 16 16 C 1.52998 * 109.47155 * 89.99721 * 14 13 11 17 17 C 1.50695 * 109.47326 * 209.99945 * 14 13 11 18 18 H 1.08004 * 120.00345 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00159 * 179.97438 * 17 14 13 20 20 N 1.31518 * 119.99952 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00194 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47067 * 60.00414 * 21 19 17 23 23 H 1.48493 * 109.47190 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47364 * 300.00639 * 21 19 17 25 25 C 1.51649 * 132.17413 * 179.10169 * 6 5 4 26 26 H 1.08994 * 109.46785 * 90.00282 * 1 2 3 27 27 H 1.09003 * 109.46602 * 209.99721 * 1 2 3 28 28 H 1.08994 * 109.47230 * 329.99649 * 1 2 3 29 29 H 1.08002 * 119.82726 * 0.02562 * 3 2 1 30 30 H 1.07992 * 120.11793 * 179.88645 * 4 3 2 31 31 H 1.07996 * 120.00815 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.47138 * 60.00564 * 16 14 13 33 33 H 1.09001 * 109.46971 * 179.97438 * 16 14 13 34 34 H 1.08996 * 109.47213 * 300.00579 * 16 14 13 35 35 H 0.96996 * 120.00057 * 179.97438 * 20 19 17 36 36 H 1.09003 * 110.93369 * 313.79731 * 25 6 5 37 37 H 1.09003 * 110.93542 * 77.46744 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1964 0.0000 4 6 3.5768 1.2078 -0.0005 5 6 4.2738 0.0122 -0.0045 6 6 3.5898 -1.1829 -0.0084 7 6 2.2008 -1.2072 -0.0011 8 8 1.7307 -2.4847 0.0156 9 6 2.7673 -3.3761 -0.4295 10 1 2.7192 -3.5156 -1.5094 11 6 2.6792 -4.7014 0.2824 12 8 1.7961 -4.8997 1.0829 13 8 3.5817 -5.6616 0.0271 14 6 3.4351 -6.9129 0.7490 15 1 2.9806 -6.7204 1.7210 16 6 2.5424 -7.8625 -0.0523 17 6 4.7904 -7.5421 0.9440 18 1 5.6738 -7.0507 0.5637 19 6 4.9030 -8.7448 1.6087 20 7 3.8274 -9.3431 2.0722 21 14 6.5831 -9.5245 1.8510 22 1 7.4492 -8.6025 2.6287 23 1 6.4331 -10.8042 2.5892 24 1 7.2027 -9.7869 0.5271 25 6 4.0594 -2.6246 -0.0309 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6495 2.1289 0.0004 30 1 4.1109 2.1464 -0.0024 31 1 5.3537 0.0165 -0.0045 32 1 2.9969 -8.0549 -1.0242 33 1 2.4328 -8.8019 0.4894 34 1 1.5621 -7.4073 -0.1933 35 1 3.9065 -10.1894 2.5395 36 1 4.8399 -2.7685 -0.7780 37 1 4.4036 -2.9375 0.9549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835158729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = -114.238731 kcal Electronic energy + Delta-G solvation = -20933.038530 eV Core-core repulsion = 17640.059242 eV Total energy + Delta-G solvation = -3292.979288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57263 -41.12167 -38.65105 -37.59494 -35.42601 -34.61779 -32.36058 -31.77104 -30.71905 -27.72216 -27.50174 -26.02895 -23.64958 -23.01103 -21.88720 -21.55374 -19.18099 -18.85330 -18.17580 -17.93592 -17.72746 -16.80337 -16.53296 -16.26873 -15.47478 -14.99093 -14.78989 -14.58451 -14.42731 -14.25410 -14.03881 -13.88384 -13.56200 -13.28272 -13.20916 -13.05173 -12.91662 -12.82601 -12.42561 -12.42110 -12.21295 -12.16494 -11.77461 -11.68479 -11.40674 -11.06732 -10.62585 -9.66163 -9.14629 -8.30984 -6.48895 0.28928 0.35981 1.03966 1.24745 1.44033 1.46381 1.55641 2.31703 2.44215 2.73895 3.00053 3.21862 3.41334 3.72089 3.79423 3.88244 4.06344 4.28020 4.40492 4.45671 4.47234 4.58631 4.69109 4.73148 4.76470 4.77138 4.77699 4.96153 5.05215 5.26314 5.39982 5.43727 5.45533 5.53657 5.55383 5.62078 5.82780 5.97606 6.14018 6.54166 6.78270 7.22362 8.76845 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.032320 B = 0.003890 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.119636 B = 7196.595427 C = 7827.920813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.077 4.077 6 C -0.177 4.177 7 C 0.064 3.936 8 O -0.305 6.305 9 C 0.096 3.904 10 H 0.153 0.847 11 C 0.454 3.546 12 O -0.540 6.540 13 O -0.347 6.347 14 C 0.217 3.783 15 H 0.006 0.994 16 C -0.144 4.144 17 C -0.549 4.549 18 H 0.074 0.926 19 C 0.016 3.984 20 N -0.918 5.918 21 Si 0.986 3.014 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.261 1.261 25 C -0.089 4.089 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.021 0.979 35 H 0.272 0.728 36 H 0.136 0.864 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 20.914 -7.170 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.115 4.115 3 C -0.104 4.104 4 C -0.153 4.153 5 C -0.095 4.095 6 C -0.178 4.178 7 C 0.019 3.981 8 O -0.220 6.220 9 C 0.039 3.961 10 H 0.170 0.830 11 C 0.297 3.703 12 O -0.430 6.430 13 O -0.263 6.263 14 C 0.164 3.836 15 H 0.024 0.976 16 C -0.202 4.202 17 C -0.586 4.586 18 H 0.092 0.908 19 C -0.184 4.184 20 N -0.556 5.556 21 Si 0.809 3.191 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.126 4.126 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.168 0.832 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.322 20.537 -6.762 21.625 hybrid contribution 0.207 -1.219 0.570 1.362 sum 0.530 19.318 -6.193 20.294 Atomic orbital electron populations 1.20721 0.89905 1.02964 1.03011 1.19526 0.97360 0.89399 1.05218 1.21200 0.94807 0.96606 0.97787 1.21487 0.94088 0.98591 1.01150 1.20672 1.01297 0.89811 0.97739 1.20865 0.93180 0.95729 1.08037 1.19842 0.93141 0.84868 1.00203 1.86859 1.37623 1.14497 1.82978 1.22775 0.88339 0.84959 1.00023 0.83033 1.23670 0.79426 0.86998 0.80218 1.90623 1.35772 1.81767 1.34827 1.86449 1.50561 1.25490 1.63800 1.20473 0.97419 0.75939 0.89765 0.97616 1.22017 0.96161 1.01808 1.00235 1.21258 0.92003 1.06719 1.38654 0.90818 1.25878 1.02014 0.96578 0.93920 1.70019 1.30502 1.17847 1.37238 0.85181 0.77622 0.77349 0.78962 1.19205 1.20393 1.18561 1.21676 0.96257 0.89929 1.04756 0.90297 0.93660 0.89034 0.81906 0.81861 0.83176 0.92969 0.89852 0.95954 0.91914 0.84634 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 9.98 71.24 0.71 -1.51 16 2 C -0.11 -2.68 5.90 -19.68 -0.12 -2.80 16 3 C -0.09 -1.43 9.66 22.21 0.21 -1.22 16 4 C -0.14 -2.05 10.07 22.31 0.22 -1.82 16 5 C -0.08 -1.46 10.03 22.18 0.22 -1.24 16 6 C -0.18 -4.56 6.27 -19.53 -0.12 -4.69 16 7 C 0.06 1.88 6.73 22.68 0.15 2.04 16 8 O -0.30 -11.01 10.27 -76.87 -0.79 -11.80 16 9 C 0.10 3.20 4.15 30.43 0.13 3.33 16 10 H 0.15 4.02 8.14 -2.39 -0.02 4.00 16 11 C 0.45 20.28 7.23 71.24 0.51 20.79 16 12 O -0.54 -28.58 15.80 28.15 0.44 -28.13 16 13 O -0.35 -16.69 9.86 -51.39 -0.51 -17.20 16 14 C 0.22 12.05 2.56 29.85 0.08 12.13 16 15 H 0.01 0.38 7.16 -2.38 -0.02 0.36 16 16 C -0.14 -7.54 9.33 71.98 0.67 -6.86 16 17 C -0.55 -30.89 8.90 25.60 0.23 -30.66 16 18 H 0.07 3.98 7.81 -2.91 -0.02 3.96 16 19 C 0.02 0.87 5.30 84.65 0.45 1.32 16 20 N -0.92 -52.90 11.32 21.45 0.24 -52.66 16 21 Si 0.99 42.33 29.54 68.60 2.03 44.36 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 C -0.09 -2.46 6.63 30.73 0.20 -2.26 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.14 8.00 -2.39 -0.02 1.12 16 28 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 29 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.05 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.08 4.65 6.07 -2.39 -0.01 4.64 16 34 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.08 2.51 7.92 -2.39 -0.02 2.49 16 Total: -1.00 -71.80 319.08 6.04 -65.75 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.07 Total: 13.13 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 3.56 Total: -13.45 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.24 Total: -52.66 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -0.85 Total: -57.13 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -71.80 6.04 -65.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.487 kcal (2) G-P(sol) polarization free energy of solvation -71.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds