Wall clock time and date at job start Mon Mar 30 2020 01:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37977 * 119.87895 * 2 1 4 4 C 1.38248 * 120.35086 * 179.73133 * 3 2 1 5 5 C 1.38395 * 119.76553 * 0.08874 * 4 3 2 6 6 C 1.37698 * 119.98165 * 359.97438 * 5 4 3 7 7 C 1.38929 * 120.77666 * 0.37936 * 6 5 4 8 8 O 1.36138 * 111.20935 * 178.96833 * 7 6 5 9 9 C 1.43785 * 109.20419 * 19.35229 * 8 7 6 10 10 H 1.09001 * 110.74562 * 90.42324 * 9 8 7 11 11 C 1.50702 * 110.74926 * 213.58951 * 9 8 7 12 12 O 1.20818 * 120.00180 * 3.55249 * 11 9 8 13 13 O 1.34234 * 119.99681 * 183.54470 * 11 9 8 14 14 C 1.45203 * 116.99771 * 179.97438 * 13 11 9 15 15 H 1.09005 * 109.47126 * 30.00564 * 14 13 11 16 16 C 1.52996 * 109.47088 * 270.00547 * 14 13 11 17 17 C 1.50696 * 109.46768 * 150.00218 * 14 13 11 18 18 H 1.08001 * 120.00099 * 0.02562 * 17 14 13 19 19 C 1.37883 * 119.99993 * 180.02562 * 17 14 13 20 20 N 1.31512 * 119.99851 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 120.00037 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.46856 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46808 * 119.99707 * 21 19 17 24 24 H 1.48497 * 109.46967 * 239.99814 * 21 19 17 25 25 C 1.51636 * 132.18013 * 180.90037 * 6 5 4 26 26 H 1.08998 * 109.47499 * 89.99752 * 1 2 3 27 27 H 1.09004 * 109.46839 * 209.99788 * 1 2 3 28 28 H 1.09000 * 109.47258 * 329.98786 * 1 2 3 29 29 H 1.08002 * 119.82804 * 0.02562 * 3 2 1 30 30 H 1.07993 * 120.11503 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.01142 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.46448 * 180.02562 * 16 14 13 33 33 H 1.08996 * 109.47060 * 299.99808 * 16 14 13 34 34 H 1.08994 * 109.47364 * 60.00064 * 16 14 13 35 35 H 0.96995 * 120.00349 * 180.02562 * 20 19 17 36 36 H 1.09003 * 110.94187 * 282.55299 * 25 6 5 37 37 H 1.08998 * 110.93732 * 46.22871 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2078 0.0056 5 6 4.2737 0.0121 0.0094 6 6 3.5897 -1.1830 0.0081 7 6 2.2007 -1.2072 -0.0049 8 8 1.7305 -2.4846 -0.0267 9 6 2.7653 -3.3772 0.4205 10 1 2.7128 -3.5192 1.5000 11 6 2.6751 -4.7004 -0.2950 12 8 1.8509 -4.8626 -1.1634 13 8 3.5106 -5.6987 0.0324 14 6 3.3661 -6.9454 -0.6979 15 1 2.9998 -6.7372 -1.7033 16 6 2.3707 -7.8507 0.0303 17 6 4.7032 -7.6352 -0.7834 18 1 5.5743 -7.1822 -0.3335 19 6 4.8145 -8.8447 -1.4360 20 7 3.7537 -9.3965 -1.9835 21 14 6.4718 -9.7001 -1.5413 22 1 7.4977 -8.8785 -0.8501 23 1 6.3834 -11.0323 -0.8911 24 1 6.8518 -9.8693 -2.9669 25 6 4.0591 -2.6248 0.0289 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5140 29 1 1.6495 2.1289 0.0004 30 1 4.1109 2.1464 0.0060 31 1 5.3537 0.0164 0.0133 32 1 2.2627 -8.7867 -0.5178 33 1 2.7371 -8.0589 1.0355 34 1 1.4037 -7.3517 0.0921 35 1 3.8318 -10.2475 -2.4423 36 1 4.4073 -2.9354 -0.9562 37 1 4.8365 -2.7705 0.7789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835158731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:46 Heat of formation + Delta-G solvation = -114.467832 kcal Electronic energy + Delta-G solvation = -20924.516843 eV Core-core repulsion = 17631.527620 eV Total energy + Delta-G solvation = -3292.989223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57598 -41.12190 -38.65346 -37.59281 -35.42521 -34.62056 -32.35625 -31.78085 -30.72081 -27.72380 -27.50650 -26.04400 -23.63515 -23.01788 -21.89523 -21.55328 -19.19252 -18.87105 -18.14720 -17.93185 -17.72791 -16.82488 -16.53618 -16.26670 -15.45730 -15.00975 -14.80356 -14.56572 -14.43591 -14.25373 -14.05127 -13.88815 -13.58452 -13.28840 -13.19208 -13.05830 -12.90654 -12.84028 -12.43605 -12.41025 -12.21795 -12.14678 -11.77566 -11.68990 -11.40984 -11.04921 -10.64037 -9.66425 -9.15009 -8.31484 -6.49088 0.28580 0.36106 1.02359 1.26107 1.43174 1.44318 1.58523 2.32063 2.44578 2.73077 2.99732 3.21275 3.41889 3.72026 3.79225 3.87363 4.06303 4.27941 4.40618 4.45358 4.46862 4.58149 4.68340 4.72972 4.75533 4.76366 4.78219 4.95954 5.04990 5.26002 5.39809 5.43969 5.45440 5.53497 5.55159 5.61960 5.82671 5.97387 6.13885 6.54385 6.78383 7.22242 8.76823 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.033147 B = 0.003859 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.524070 B = 7254.266221 C = 7879.964330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.077 4.077 6 C -0.177 4.177 7 C 0.064 3.936 8 O -0.305 6.305 9 C 0.095 3.905 10 H 0.151 0.849 11 C 0.454 3.546 12 O -0.539 6.539 13 O -0.347 6.347 14 C 0.216 3.784 15 H 0.007 0.993 16 C -0.145 4.145 17 C -0.547 4.547 18 H 0.073 0.927 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.987 3.013 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.277 1.277 25 C -0.089 4.089 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.021 0.979 35 H 0.271 0.729 36 H 0.081 0.919 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 20.987 7.061 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.115 4.115 3 C -0.104 4.104 4 C -0.153 4.153 5 C -0.095 4.095 6 C -0.178 4.178 7 C 0.020 3.980 8 O -0.219 6.219 9 C 0.038 3.962 10 H 0.169 0.831 11 C 0.297 3.703 12 O -0.429 6.429 13 O -0.264 6.264 14 C 0.163 3.837 15 H 0.024 0.976 16 C -0.202 4.202 17 C -0.584 4.584 18 H 0.092 0.908 19 C -0.184 4.184 20 N -0.556 5.556 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.203 1.203 25 C -0.126 4.126 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.168 0.832 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.358 20.628 6.636 21.672 hybrid contribution 0.203 -1.249 -0.565 1.386 sum 0.561 19.380 6.070 20.316 Atomic orbital electron populations 1.20719 0.89907 1.03353 1.02615 1.19526 0.97363 0.89408 1.05218 1.21204 0.94812 0.96611 0.97757 1.21486 0.94088 0.98592 1.01155 1.20674 1.01300 0.89800 0.97721 1.20854 0.93175 0.95694 1.08079 1.19846 0.93144 0.84867 1.00173 1.86867 1.37791 1.14460 1.82800 1.22787 0.88459 0.84929 0.99995 0.83150 1.23657 0.78520 0.87013 0.81095 1.90620 1.36936 1.83200 1.32182 1.86453 1.54959 1.23696 1.61255 1.20485 0.97258 0.76090 0.89817 0.97557 1.22015 0.95850 1.01813 1.00554 1.21316 0.93597 1.05930 1.37588 0.90839 1.25882 1.01793 0.97022 0.93748 1.70028 1.30913 1.18836 1.35842 0.85077 0.77743 0.78122 0.78113 1.18353 1.19676 1.20254 1.21666 0.96180 0.89962 1.04775 0.91375 0.93040 0.88599 0.81899 0.81851 0.83161 0.89841 0.92973 0.95978 0.91924 0.90077 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 9.98 71.23 0.71 -1.50 16 2 C -0.11 -2.68 5.90 -19.69 -0.12 -2.80 16 3 C -0.09 -1.43 9.66 22.21 0.21 -1.21 16 4 C -0.14 -2.04 10.07 22.31 0.22 -1.82 16 5 C -0.08 -1.45 10.03 22.18 0.22 -1.23 16 6 C -0.18 -4.55 6.27 -19.53 -0.12 -4.68 16 7 C 0.06 1.89 6.73 22.68 0.15 2.04 16 8 O -0.30 -10.99 10.28 -76.87 -0.79 -11.78 16 9 C 0.10 3.18 4.15 30.43 0.13 3.31 16 10 H 0.15 4.01 8.14 -2.39 -0.02 3.99 16 11 C 0.45 20.30 7.24 71.24 0.52 20.81 16 12 O -0.54 -28.53 15.79 28.19 0.45 -28.08 16 13 O -0.35 -16.75 9.86 -51.46 -0.51 -17.26 16 14 C 0.22 12.03 2.56 29.85 0.08 12.10 16 15 H 0.01 0.41 7.16 -2.38 -0.02 0.40 16 16 C -0.14 -7.55 9.33 71.98 0.67 -6.88 16 17 C -0.55 -30.78 8.90 25.60 0.23 -30.56 16 18 H 0.07 3.99 7.81 -2.91 -0.02 3.97 16 19 C 0.02 0.83 5.30 84.66 0.45 1.28 16 20 N -0.92 -52.84 11.32 21.45 0.24 -52.60 16 21 Si 0.99 42.36 29.54 68.60 2.03 44.39 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 25 C -0.09 -2.45 6.64 30.73 0.20 -2.25 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.21 8.02 -2.38 -0.02 1.19 16 28 H 0.10 1.31 8.08 -2.39 -0.02 1.29 16 29 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 31 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.08 4.66 6.07 -2.38 -0.01 4.65 16 33 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.08 2.50 7.92 -2.39 -0.02 2.48 16 37 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -71.82 319.12 6.04 -65.78 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.07 Total: 12.93 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 3.56 Total: -13.37 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.24 Total: -52.60 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -0.85 Total: -57.12 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -71.82 6.04 -65.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.692 kcal (2) G-P(sol) polarization free energy of solvation -71.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds