Wall clock time and date at job start Mon Mar 30 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31001 * 119.99518 * 2 1 4 4 C 1.50699 * 120.00236 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.46972 * 135.00068 * 4 3 2 6 6 C 1.35896 * 117.00039 * 180.02562 * 5 4 3 7 7 C 1.38761 * 120.05444 * 359.72609 * 6 5 4 8 8 C 1.38126 * 119.94124 * 179.70419 * 7 6 5 9 9 C 1.38281 * 120.05692 * 0.59132 * 8 7 6 10 10 C 1.38248 * 120.10986 * 359.67803 * 9 8 7 11 11 C 1.50704 * 119.96902 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47067 * 270.02492 * 11 10 9 13 13 O 1.21216 * 120.00084 * 0.02562 * 12 11 10 14 14 O 1.34312 * 120.00285 * 180.02562 * 12 11 10 15 15 C 1.34911 * 117.00259 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00601 * 359.97438 * 15 14 12 17 17 C 1.38758 * 120.00162 * 180.02562 * 15 14 12 18 18 N 1.31443 * 119.99978 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00325 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47011 * 59.99750 * 19 17 15 21 21 H 1.48500 * 109.47258 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47000 * 300.00065 * 19 17 15 23 23 C 1.38159 * 120.05896 * 0.02706 * 10 9 8 24 24 H 1.09009 * 109.46947 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47146 * 299.99325 * 1 2 3 26 26 H 1.08998 * 109.47296 * 60.00162 * 1 2 3 27 27 H 1.07998 * 120.00384 * 180.02562 * 2 1 3 28 28 H 1.08003 * 119.99629 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47247 * 15.00003 * 4 3 2 30 30 H 1.09001 * 109.47358 * 254.99430 * 4 3 2 31 31 H 1.07995 * 120.02644 * 359.97150 * 7 6 5 32 32 H 1.07997 * 119.96820 * 180.29410 * 8 7 6 33 33 H 1.08002 * 119.94662 * 179.70702 * 9 8 7 34 34 H 1.08996 * 109.47381 * 30.02342 * 11 10 9 35 35 H 1.08994 * 109.46886 * 150.02908 * 11 10 9 36 36 H 0.96998 * 120.00248 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.03264 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4083 2.4396 0.0006 5 8 1.9956 3.3283 0.9533 6 6 1.4307 4.5578 1.0801 7 6 0.3370 4.9039 0.2994 8 6 -0.2391 6.1520 0.4345 9 6 0.2807 7.0606 1.3381 10 6 1.3737 6.7201 2.1131 11 6 1.9372 7.7125 3.0973 12 6 2.9939 8.5468 2.4202 13 8 3.2624 8.3549 1.2539 14 8 3.6381 9.5031 3.1091 15 6 4.5719 10.2138 2.4435 16 1 4.7724 10.0018 1.4036 17 6 5.2756 11.2166 3.0951 18 7 5.0320 11.4744 4.3608 19 14 6.5690 12.2002 2.1738 20 1 5.9363 12.8950 1.0238 21 1 7.1714 13.2039 3.0874 22 1 7.6269 11.2840 1.6773 23 6 1.9499 5.4708 1.9861 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 2.0470 -0.9353 -0.0004 28 1 3.2419 1.1346 -0.0004 29 1 0.3671 2.2579 0.2669 30 1 1.4567 2.8876 -0.9920 31 1 -0.0660 4.1966 -0.4102 32 1 -1.0932 6.4202 -0.1695 33 1 -0.1683 8.0377 1.4390 34 1 1.1383 8.3606 3.4576 35 1 2.3794 7.1789 3.9385 36 1 5.5242 12.1751 4.8165 37 1 2.8035 5.2051 2.5920 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837929087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:44 Heat of formation + Delta-G solvation = -80.506680 kcal Electronic energy + Delta-G solvation = -20033.875161 eV Core-core repulsion = 16742.358604 eV Total energy + Delta-G solvation = -3291.516557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14875 -38.97105 -37.65986 -35.64516 -35.05197 -32.32850 -32.04221 -30.34163 -28.37619 -27.73575 -25.82143 -25.01372 -22.42706 -21.66711 -19.89048 -18.90463 -17.71009 -17.59742 -16.55467 -16.46456 -15.92545 -15.83612 -14.97805 -14.54143 -14.47356 -14.38953 -13.93752 -13.76302 -13.61865 -13.09869 -12.71557 -12.54651 -12.15068 -12.07302 -11.82516 -11.59587 -11.37169 -11.25433 -11.05026 -10.93112 -10.65936 -10.43020 -10.29207 -9.76491 -9.45027 -9.02554 -8.59381 -8.52992 -8.01445 -6.36416 -4.04143 1.48700 1.65532 1.71682 3.16738 3.21484 3.25584 3.31653 3.59623 3.83529 4.09455 4.50873 4.70691 4.76971 4.88842 4.93144 4.96041 5.03072 5.08775 5.16118 5.24181 5.25643 5.48176 5.53636 5.54712 5.67296 5.71009 5.90841 6.02753 6.20453 6.23594 6.37658 6.44065 6.58107 6.74567 6.86462 6.98566 7.44143 7.52291 8.00582 8.77636 9.12519 9.91284 10.81718 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031134 B = 0.003106 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.124303 B = 9013.564704 C = 9426.237330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.146 4.146 3 C -0.159 4.159 4 C 0.085 3.915 5 O -0.312 6.312 6 C 0.126 3.874 7 C -0.215 4.215 8 C -0.082 4.082 9 C -0.140 4.140 10 C -0.015 4.015 11 C -0.070 4.070 12 C 0.400 3.600 13 O -0.548 6.548 14 O -0.216 6.216 15 C -0.381 4.381 16 H 0.094 0.906 17 C 0.041 3.959 18 N -0.867 5.867 19 Si 0.943 3.057 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.270 1.270 23 C -0.134 4.134 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.269 0.731 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.900 -17.981 -6.089 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C -0.177 4.177 4 C 0.010 3.990 5 O -0.227 6.227 6 C 0.081 3.919 7 C -0.233 4.233 8 C -0.100 4.100 9 C -0.158 4.158 10 C -0.015 4.015 11 C -0.108 4.108 12 C 0.246 3.754 13 O -0.444 6.444 14 O -0.124 6.124 15 C -0.457 4.457 16 H 0.112 0.888 17 C -0.162 4.162 18 N -0.505 5.505 19 Si 0.768 3.232 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.195 1.195 23 C -0.153 4.153 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.583 -17.952 -6.111 21.716 hybrid contribution 0.582 0.487 -0.652 1.001 sum -10.000 -17.465 -6.763 21.231 Atomic orbital electron populations 1.20964 0.93267 1.02659 1.02218 1.22841 0.96365 0.97720 0.99520 1.22571 1.00606 0.92401 1.02163 1.21810 0.96661 0.88082 0.92410 1.86077 1.55690 1.22444 1.58447 1.18852 0.92769 0.84676 0.95572 1.21109 0.99414 0.99190 1.03637 1.20816 0.99042 0.92817 0.97338 1.20932 0.97641 0.99692 0.97514 1.19193 0.93923 0.92709 0.95694 1.20123 0.97473 0.95913 0.97297 1.22941 0.83985 0.82194 0.86250 1.90584 1.66291 1.69496 1.18054 1.83872 1.45621 1.40807 1.42072 1.21158 1.13979 1.14079 0.96517 0.88815 1.25316 0.98215 0.96782 0.95917 1.69983 1.40398 1.30742 1.09351 0.85754 0.79820 0.78948 0.78705 1.19535 1.20406 1.19524 1.20244 1.01677 0.92630 1.00710 0.91782 0.91169 0.91494 0.86441 0.86143 0.91237 0.91197 0.86021 0.85971 0.85871 0.87786 0.87888 0.92094 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 8.70 36.01 0.31 -0.53 16 2 C -0.15 -1.10 10.26 -36.03 -0.37 -1.47 16 3 C -0.16 -1.49 9.89 -36.03 -0.36 -1.84 16 4 C 0.09 0.90 4.87 36.01 0.18 1.07 16 5 O -0.31 -4.52 10.12 -19.41 -0.20 -4.71 16 6 C 0.13 1.95 6.69 -39.21 -0.26 1.69 16 7 C -0.21 -2.91 9.04 -39.43 -0.36 -3.27 16 8 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 9 C -0.14 -2.19 9.70 -39.56 -0.38 -2.57 16 10 C -0.01 -0.26 4.37 -104.64 -0.46 -0.72 16 11 C -0.07 -1.29 5.94 -29.03 -0.17 -1.47 16 12 C 0.40 10.03 7.90 36.01 0.28 10.31 16 13 O -0.55 -15.12 15.27 -19.06 -0.29 -15.41 16 14 O -0.22 -6.28 9.75 -20.68 -0.20 -6.48 16 15 C -0.38 -11.48 9.65 30.92 0.30 -11.19 16 16 H 0.09 2.85 6.86 -52.49 -0.36 2.49 16 17 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 18 N -0.87 -25.74 13.67 55.48 0.76 -24.99 16 19 Si 0.94 21.71 29.55 -169.99 -5.02 16.69 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C -0.13 -2.28 9.64 -39.44 -0.38 -2.66 16 24 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 25 H 0.07 0.47 7.49 -51.93 -0.39 0.08 16 26 H 0.07 0.38 8.02 -51.93 -0.42 -0.03 16 27 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 28 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.07 0.63 5.51 -51.93 -0.29 0.35 16 30 H 0.07 0.69 7.65 -51.93 -0.40 0.30 16 31 H 0.12 1.29 6.30 -52.49 -0.33 0.96 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.10 1.67 8.08 -51.93 -0.42 1.25 16 35 H 0.10 1.69 8.08 -51.93 -0.42 1.27 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -34.81 326.58 -6.88 -41.69 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.69 Total: 1.36 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -2.16 Total: -13.07 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 0.76 Total: -24.99 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.69 Total: -26.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.81 -6.88 -41.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837929087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.815 kcal (2) G-P(sol) polarization free energy of solvation -34.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds