Wall clock time and date at job start Mon Mar 30 2020 01:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.31001 * 119.99518 * 2 1 4 4 C 1.50699 * 120.00236 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.46972 * 135.00068 * 4 3 2 6 6 C 1.35896 * 117.00039 * 180.02562 * 5 4 3 7 7 C 1.38761 * 120.05444 * 359.72609 * 6 5 4 8 8 C 1.38126 * 119.94124 * 179.70419 * 7 6 5 9 9 C 1.38281 * 120.05692 * 0.59132 * 8 7 6 10 10 C 1.38248 * 120.10986 * 359.67803 * 9 8 7 11 11 C 1.50704 * 119.96902 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47067 * 270.02492 * 11 10 9 13 13 O 1.21216 * 120.00084 * 0.02562 * 12 11 10 14 14 O 1.34312 * 120.00285 * 180.02562 * 12 11 10 15 15 C 1.34911 * 117.00259 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00601 * 359.97438 * 15 14 12 17 17 C 1.38758 * 120.00162 * 180.02562 * 15 14 12 18 18 N 1.31443 * 119.99978 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00325 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47011 * 59.99750 * 19 17 15 21 21 H 1.48500 * 109.47258 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47000 * 300.00065 * 19 17 15 23 23 C 1.38159 * 120.05896 * 0.02706 * 10 9 8 24 24 H 1.09009 * 109.46947 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47146 * 299.99325 * 1 2 3 26 26 H 1.08998 * 109.47296 * 60.00162 * 1 2 3 27 27 H 1.07998 * 120.00384 * 180.02562 * 2 1 3 28 28 H 1.08003 * 119.99629 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47247 * 15.00003 * 4 3 2 30 30 H 1.09001 * 109.47358 * 254.99430 * 4 3 2 31 31 H 1.07995 * 120.02644 * 359.97150 * 7 6 5 32 32 H 1.07997 * 119.96820 * 180.29410 * 8 7 6 33 33 H 1.08002 * 119.94662 * 179.70702 * 9 8 7 34 34 H 1.08996 * 109.47381 * 30.02342 * 11 10 9 35 35 H 1.08994 * 109.46886 * 150.02908 * 11 10 9 36 36 H 0.96998 * 120.00248 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.03264 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1346 0.0000 4 6 1.4083 2.4396 0.0006 5 8 1.9956 3.3283 0.9533 6 6 1.4307 4.5578 1.0801 7 6 0.3370 4.9039 0.2994 8 6 -0.2391 6.1520 0.4345 9 6 0.2807 7.0606 1.3381 10 6 1.3737 6.7201 2.1131 11 6 1.9372 7.7125 3.0973 12 6 2.9939 8.5468 2.4202 13 8 3.2624 8.3549 1.2539 14 8 3.6381 9.5031 3.1091 15 6 4.5719 10.2138 2.4435 16 1 4.7724 10.0018 1.4036 17 6 5.2756 11.2166 3.0951 18 7 5.0320 11.4744 4.3608 19 14 6.5690 12.2002 2.1738 20 1 5.9363 12.8950 1.0238 21 1 7.1714 13.2039 3.0874 22 1 7.6269 11.2840 1.6773 23 6 1.9499 5.4708 1.9861 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 2.0470 -0.9353 -0.0004 28 1 3.2419 1.1346 -0.0004 29 1 0.3671 2.2579 0.2669 30 1 1.4567 2.8876 -0.9920 31 1 -0.0660 4.1966 -0.4102 32 1 -1.0932 6.4202 -0.1695 33 1 -0.1683 8.0377 1.4390 34 1 1.1383 8.3606 3.4576 35 1 2.3794 7.1789 3.9385 36 1 5.5242 12.1751 4.8165 37 1 2.8035 5.2051 2.5920 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837929087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:43 Heat of formation + Delta-G solvation = -100.743796 kcal Electronic energy + Delta-G solvation = -20034.752708 eV Core-core repulsion = 16742.358604 eV Total energy + Delta-G solvation = -3292.394104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.39540 -40.80855 -38.85527 -37.18645 -36.29098 -34.31170 -33.62472 -31.42351 -29.20555 -29.10563 -27.23204 -26.43537 -23.61331 -23.08694 -21.51469 -19.86873 -19.61689 -18.78032 -18.47098 -17.42080 -17.12476 -16.97976 -16.53402 -16.42565 -16.21614 -15.65790 -15.13912 -14.69219 -14.38914 -14.26436 -14.12330 -13.80793 -13.58860 -13.39733 -13.26391 -12.85140 -12.66882 -12.51090 -12.30781 -12.19781 -12.13077 -12.04327 -11.90889 -11.57441 -11.05969 -10.69558 -10.10346 -9.83957 -9.16037 -8.53460 -6.33449 0.27913 0.48521 1.04342 1.32344 1.33682 1.49574 1.66143 2.11946 2.36592 2.61869 2.97371 3.10655 3.63297 3.80404 3.92162 4.03009 4.10552 4.20883 4.28394 4.32545 4.36394 4.43598 4.51043 4.62212 4.70638 4.78372 4.82820 5.03595 5.04859 5.10355 5.19232 5.29451 5.43868 5.61440 5.62429 5.72182 5.82785 5.84450 6.46107 6.68229 6.91491 7.77891 8.67042 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.031134 B = 0.003106 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.124303 B = 9013.564704 C = 9426.237330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C -0.189 4.189 4 C 0.080 3.920 5 O -0.332 6.332 6 C 0.118 3.882 7 C -0.208 4.208 8 C -0.077 4.077 9 C -0.154 4.154 10 C -0.037 4.037 11 C -0.059 4.059 12 C 0.400 3.600 13 O -0.577 6.577 14 O -0.245 6.245 15 C -0.421 4.421 16 H 0.079 0.921 17 C -0.004 4.004 18 N -0.903 5.903 19 Si 1.016 2.984 20 H -0.261 1.261 21 H -0.258 1.258 22 H -0.264 1.264 23 C -0.160 4.160 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.133 0.867 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.279 0.721 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.072 -18.804 -7.290 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C -0.207 4.207 4 C 0.006 3.994 5 O -0.246 6.246 6 C 0.073 3.927 7 C -0.226 4.226 8 C -0.094 4.094 9 C -0.172 4.172 10 C -0.037 4.037 11 C -0.097 4.097 12 C 0.248 3.752 13 O -0.474 6.474 14 O -0.154 6.154 15 C -0.497 4.497 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.540 5.540 19 Si 0.835 3.165 20 H -0.186 1.186 21 H -0.182 1.182 22 H -0.188 1.188 23 C -0.179 4.179 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.151 0.849 28 H 0.130 0.870 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.776 -18.801 -7.304 23.356 hybrid contribution 0.846 0.548 -0.322 1.058 sum -10.930 -18.252 -7.625 22.600 Atomic orbital electron populations 1.21048 0.92153 1.03846 1.02478 1.23133 0.97311 0.97620 0.96491 1.22539 1.00418 0.92596 1.05181 1.22073 0.97609 0.87829 0.91877 1.86062 1.56492 1.22426 1.59651 1.18979 0.93317 0.84947 0.95483 1.21505 0.98193 0.99785 1.03134 1.21245 0.99518 0.92164 0.96496 1.21198 0.97446 1.00767 0.97820 1.19180 0.95224 0.92611 0.96731 1.20215 0.96066 0.95714 0.97670 1.24240 0.83805 0.81089 0.86109 1.90542 1.67235 1.70016 1.19629 1.83897 1.46313 1.42175 1.43023 1.21349 1.15913 1.15987 0.96477 0.90317 1.26521 0.99950 0.97066 0.96907 1.70064 1.41595 1.31503 1.10886 0.84709 0.76567 0.77468 0.77754 1.18589 1.18205 1.18816 1.20327 1.02102 0.93490 1.01954 0.90263 0.91390 0.90586 0.84943 0.86971 0.89498 0.90639 0.82721 0.82341 0.84907 0.85240 0.86193 0.91173 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.70 71.24 0.62 -0.75 16 2 C -0.13 -1.67 10.26 25.65 0.26 -1.40 16 3 C -0.19 -3.36 9.89 25.65 0.25 -3.11 16 4 C 0.08 1.58 4.87 71.24 0.35 1.93 16 5 O -0.33 -9.52 10.12 -92.39 -0.93 -10.46 16 6 C 0.12 3.59 6.69 22.51 0.15 3.74 16 7 C -0.21 -5.15 9.04 22.37 0.20 -4.94 16 8 C -0.08 -1.89 10.04 22.25 0.22 -1.67 16 9 C -0.15 -4.66 9.70 22.28 0.22 -4.45 16 10 C -0.04 -1.30 4.37 -19.88 -0.09 -1.39 16 11 C -0.06 -2.21 5.94 29.10 0.17 -2.04 16 12 C 0.40 20.69 7.90 71.24 0.56 21.25 16 13 O -0.58 -32.95 15.27 20.76 0.32 -32.63 16 14 O -0.25 -14.79 9.75 14.95 0.15 -14.64 16 15 C -0.42 -26.26 9.65 67.94 0.66 -25.61 16 16 H 0.08 4.99 6.86 -2.91 -0.02 4.97 16 17 C 0.00 -0.25 5.49 84.88 0.47 0.21 16 18 N -0.90 -54.22 13.67 21.63 0.30 -53.92 16 19 Si 1.02 44.42 29.55 68.60 2.03 46.44 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 23 C -0.16 -5.57 9.64 22.36 0.22 -5.35 16 24 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 25 H 0.07 0.74 7.49 -2.39 -0.02 0.72 16 26 H 0.08 0.64 8.02 -2.39 -0.02 0.62 16 27 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 28 H 0.11 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.09 1.37 5.51 -2.39 -0.01 1.36 16 30 H 0.08 1.37 7.65 -2.39 -0.02 1.35 16 31 H 0.16 2.72 6.30 -2.91 -0.02 2.70 16 32 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 33 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 34 H 0.13 4.10 8.08 -2.39 -0.02 4.08 16 35 H 0.12 4.00 8.08 -2.39 -0.02 3.98 16 36 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -77.74 326.58 7.18 -70.56 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 1.07 Total: 18.23 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 4.26 Total: -23.57 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.30 Total: -53.92 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -0.47 Total: -57.74 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -77.74 7.18 -70.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837929087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.187 kcal (2) G-P(sol) polarization free energy of solvation -77.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds