Wall clock time and date at job start Mon Mar 30 2020 01:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30994 * 120.00309 * 2 1 4 4 C 1.50706 * 120.00304 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47380 * 134.72565 * 4 3 2 6 6 C 1.35894 * 116.99904 * 180.02562 * 5 4 3 7 7 C 1.38753 * 120.06073 * 359.72556 * 6 5 4 8 8 C 1.38115 * 119.94495 * 179.70279 * 7 6 5 9 9 C 1.38286 * 120.05683 * 0.59467 * 8 7 6 10 10 C 1.38239 * 120.11473 * 359.67555 * 9 8 7 11 11 C 1.50699 * 119.97923 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.46950 * 270.02783 * 11 10 9 13 13 O 1.21212 * 120.00402 * 359.97438 * 12 11 10 14 14 O 1.34311 * 119.99449 * 179.97438 * 12 11 10 15 15 C 1.34931 * 116.99591 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00111 * 0.02562 * 15 14 12 17 17 C 1.38752 * 119.99622 * 180.02562 * 15 14 12 18 18 N 1.31441 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99702 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47012 * 89.99764 * 19 17 15 21 21 H 1.48496 * 109.46868 * 209.99673 * 19 17 15 22 22 H 1.48494 * 109.47170 * 330.00043 * 19 17 15 23 23 C 1.38170 * 120.05315 * 0.02891 * 10 9 8 24 24 H 1.08999 * 109.47405 * 300.00403 * 1 2 3 25 25 H 1.09006 * 109.46765 * 59.99726 * 1 2 3 26 26 H 1.09001 * 109.47179 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99951 * 179.97438 * 2 1 3 28 28 H 1.08000 * 120.00336 * 359.72371 * 3 2 1 29 29 H 1.09002 * 109.47083 * 254.72833 * 4 3 2 30 30 H 1.08994 * 109.46574 * 14.72141 * 4 3 2 31 31 H 1.08003 * 120.02066 * 359.96847 * 7 6 5 32 32 H 1.08004 * 119.97199 * 180.29067 * 8 7 6 33 33 H 1.08002 * 119.94440 * 179.70071 * 9 8 7 34 34 H 1.09000 * 109.46834 * 30.02377 * 11 10 9 35 35 H 1.08993 * 109.47311 * 150.02671 * 11 10 9 36 36 H 0.97001 * 120.00412 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.03050 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1344 0.0000 4 6 3.6691 1.1344 0.0006 5 8 4.1458 2.0822 -0.9566 6 6 5.4931 2.2071 -1.0830 7 6 6.3391 1.4372 -0.2976 8 6 7.7081 1.5616 -0.4323 9 6 8.2358 2.4613 -1.3402 10 6 7.3951 3.2335 -2.1200 11 6 7.9735 4.2126 -3.1088 12 6 8.1671 5.5484 -2.4385 13 8 7.8649 5.6914 -1.2734 14 8 8.6746 6.5805 -3.1322 15 6 8.8216 7.7485 -2.4728 16 1 8.5362 7.8216 -1.4338 17 6 9.3395 8.8555 -3.1297 18 7 9.6873 8.7663 -4.3941 19 14 9.5438 10.4723 -2.2166 20 1 10.8908 10.5220 -1.5934 21 1 9.3976 11.6012 -3.1702 22 1 8.5055 10.5789 -1.1604 23 6 6.0250 3.1085 -1.9934 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.0470 -0.9353 0.0004 28 1 1.6221 2.0698 -0.0045 29 1 4.0320 1.4053 0.9921 30 1 4.0324 0.1404 -0.2602 31 1 5.9274 0.7382 0.4154 32 1 8.3670 0.9592 0.1755 33 1 9.3065 2.5605 -1.4406 34 1 8.9345 3.8429 -3.4664 35 1 7.2909 4.3244 -3.9512 36 1 10.0491 9.5403 -4.8534 37 1 5.3686 3.7117 -2.6030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837929094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:45 Heat of formation + Delta-G solvation = -102.893224 kcal Electronic energy + Delta-G solvation = -19868.098339 eV Core-core repulsion = 16575.611029 eV Total energy + Delta-G solvation = -3292.487310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39041 -40.79909 -38.81106 -37.17363 -36.08770 -34.31287 -33.62640 -31.62129 -29.79775 -29.20191 -27.19693 -25.46719 -23.61916 -22.96014 -21.41604 -20.56778 -19.86970 -18.70127 -18.46658 -17.39764 -17.06121 -16.86695 -16.52892 -16.49243 -16.22269 -15.35789 -15.19151 -14.57184 -14.39987 -14.28545 -14.10627 -13.81287 -13.63864 -13.41826 -13.28806 -12.85358 -12.59380 -12.47845 -12.31187 -12.20047 -12.13871 -12.06263 -11.97174 -11.74472 -11.06221 -10.69554 -10.06883 -9.83921 -9.16325 -8.53681 -6.33593 0.27840 0.48313 1.03634 1.31072 1.33798 1.51032 1.65749 2.11905 2.35142 2.61640 2.97149 3.10516 3.62553 3.79505 3.90755 4.01811 4.10470 4.20033 4.30041 4.34103 4.36245 4.47833 4.59203 4.64595 4.70971 4.80085 4.82954 4.85178 5.04597 5.13569 5.19375 5.29144 5.43830 5.61946 5.65807 5.71810 5.82365 5.84301 6.45741 6.68164 6.91461 7.77746 8.67038 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.003064 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.369313 B = 9137.241332 C = 9716.326026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.128 4.128 3 C -0.187 4.187 4 C 0.085 3.915 5 O -0.332 6.332 6 C 0.118 3.882 7 C -0.208 4.208 8 C -0.077 4.077 9 C -0.154 4.154 10 C -0.037 4.037 11 C -0.059 4.059 12 C 0.400 3.600 13 O -0.577 6.577 14 O -0.246 6.246 15 C -0.420 4.420 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.903 5.903 19 Si 1.017 2.983 20 H -0.259 1.259 21 H -0.259 1.259 22 H -0.266 1.266 23 C -0.160 4.160 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.126 0.874 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.279 0.721 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.263 -19.198 7.360 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C -0.205 4.205 4 C 0.011 3.989 5 O -0.246 6.246 6 C 0.073 3.927 7 C -0.226 4.226 8 C -0.095 4.095 9 C -0.172 4.172 10 C -0.038 4.038 11 C -0.097 4.097 12 C 0.248 3.752 13 O -0.474 6.474 14 O -0.154 6.154 15 C -0.496 4.496 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.540 5.540 19 Si 0.836 3.164 20 H -0.183 1.183 21 H -0.183 1.183 22 H -0.191 1.191 23 C -0.179 4.179 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.144 0.856 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.419 -18.936 7.373 23.310 hybrid contribution 0.184 0.933 0.321 1.004 sum -11.235 -18.003 7.694 22.573 Atomic orbital electron populations 1.20938 0.91490 1.03648 1.02548 1.23120 0.97437 0.97563 0.96476 1.22500 0.93375 0.99606 1.05052 1.21955 0.93049 0.92078 0.91775 1.86063 1.18854 1.60313 1.59416 1.18974 0.82686 0.95586 0.95475 1.21510 0.94352 1.03680 1.03076 1.21245 0.94804 0.96890 0.96520 1.21198 1.00285 0.97995 0.97762 1.19180 0.92719 0.95139 0.96713 1.20215 1.05370 0.86383 0.97698 1.24239 0.77047 0.87903 0.86034 1.90542 1.51997 1.85179 1.19706 1.83903 1.69233 1.19223 1.43076 1.21383 1.45746 0.85876 0.96619 0.90340 1.26522 0.94625 1.02483 0.96847 1.70070 1.40391 1.32795 1.10790 0.84642 0.79519 0.74619 0.77670 1.18333 1.18290 1.19058 1.20335 0.94686 1.00958 1.01891 0.90940 0.91411 0.90300 0.85644 0.87218 0.90537 0.89846 0.82662 0.82358 0.84910 0.85246 0.86177 0.91183 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 10.17 71.23 0.72 -0.61 16 2 C -0.13 -1.69 9.86 25.65 0.25 -1.44 16 3 C -0.19 -3.32 9.53 25.65 0.24 -3.08 16 4 C 0.09 1.67 5.16 71.24 0.37 2.04 16 5 O -0.33 -9.50 10.12 -92.36 -0.93 -10.43 16 6 C 0.12 3.59 6.69 22.51 0.15 3.74 16 7 C -0.21 -5.16 9.04 22.36 0.20 -4.96 16 8 C -0.08 -1.91 10.04 22.25 0.22 -1.68 16 9 C -0.15 -4.68 9.70 22.28 0.22 -4.46 16 10 C -0.04 -1.30 4.37 -19.88 -0.09 -1.39 16 11 C -0.06 -2.21 5.94 29.10 0.17 -2.04 16 12 C 0.40 20.71 7.90 71.24 0.56 21.27 16 13 O -0.58 -32.99 15.27 20.77 0.32 -32.67 16 14 O -0.25 -14.81 9.75 14.76 0.14 -14.66 16 15 C -0.42 -26.20 9.65 67.94 0.66 -25.55 16 16 H 0.08 4.99 6.86 -2.91 -0.02 4.97 16 17 C 0.00 -0.28 5.49 84.87 0.47 0.19 16 18 N -0.90 -54.19 13.67 21.62 0.30 -53.89 16 19 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C -0.16 -5.57 9.64 22.37 0.22 -5.36 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 27 H 0.13 1.26 7.90 -2.91 -0.02 1.23 16 28 H 0.11 2.11 8.05 -2.91 -0.02 2.09 16 29 H 0.08 1.36 7.65 -2.39 -0.02 1.34 16 30 H 0.08 1.28 7.39 -2.39 -0.02 1.26 16 31 H 0.16 2.73 6.30 -2.91 -0.02 2.72 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 33 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 34 H 0.13 4.11 8.09 -2.39 -0.02 4.09 16 35 H 0.12 4.01 8.08 -2.39 -0.02 3.99 16 36 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -77.73 330.05 7.28 -70.45 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.06 Total: 18.06 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.37 Total: -23.32 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.30 Total: -53.89 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -0.47 Total: -57.77 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -77.73 7.28 -70.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837929094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.445 kcal (2) G-P(sol) polarization free energy of solvation -77.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds