Wall clock time and date at job start Mon Mar 30 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99820 * 2 1 4 4 H 1.48504 * 109.47111 * 240.00128 * 3 2 1 5 5 H 1.48493 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46820 * 120.00741 * 3 2 1 7 7 C 1.37871 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47666 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47540 * 180.02562 * 10 9 7 12 12 C 1.34227 * 117.00430 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99463 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00391 * 179.97438 * 12 11 10 15 15 C 1.50694 * 109.47184 * 179.97438 * 14 12 11 16 16 C 1.38291 * 120.11946 * 90.00193 * 15 14 12 17 17 C 1.37929 * 120.35446 * 180.17130 * 16 15 14 18 18 C 1.39289 * 120.24278 * 0.06555 * 17 16 15 19 19 C 1.38981 * 118.85498 * 359.58943 * 18 17 16 20 20 C 1.37660 * 120.77699 * 0.54611 * 19 18 17 21 21 C 1.51649 * 106.97907 * 180.57567 * 19 18 17 22 22 C 1.54713 * 101.93881 * 15.71381 * 21 19 18 23 23 O 1.36126 * 129.87617 * 179.56466 * 18 17 16 24 24 H 0.97000 * 119.99744 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46640 * 60.00142 * 9 7 2 26 26 H 1.08999 * 109.47254 * 300.00836 * 9 7 2 27 27 H 1.09001 * 109.47079 * 60.00283 * 10 9 7 28 28 H 1.09004 * 109.47155 * 300.00209 * 10 9 7 29 29 H 1.09002 * 109.46689 * 59.99565 * 14 12 11 30 30 H 1.09006 * 109.46910 * 300.00193 * 14 12 11 31 31 H 1.08007 * 119.81963 * 0.19443 * 16 15 14 32 32 H 1.07996 * 119.87833 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.98294 * 179.61345 * 20 19 18 34 34 H 1.09002 * 110.94508 * 257.54041 * 21 19 18 35 35 H 1.08997 * 110.93949 * 133.88365 * 21 19 18 36 36 H 1.09003 * 110.74698 * 92.94680 * 22 21 19 37 37 H 1.09001 * 110.74689 * 216.11069 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 8 1.5192 -4.9195 -0.0011 12 6 2.2502 -6.0453 -0.0007 13 8 3.4569 -5.9820 -0.0003 14 6 1.5661 -7.3880 -0.0007 15 6 2.6040 -8.4806 -0.0008 16 6 3.0820 -8.9838 1.1954 17 6 4.0345 -9.9813 1.2010 18 6 4.5247 -10.4900 0.0005 19 6 4.0311 -9.9811 -1.1949 20 6 3.0824 -8.9836 -1.1975 21 6 4.7299 -10.7265 -2.3156 22 6 5.3262 -11.9426 -1.5680 23 8 5.4583 -11.4554 -0.2218 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.9436 -7.4786 -0.8909 30 1 0.9430 -7.4783 0.8891 31 1 2.7071 -8.5938 2.1302 32 1 4.4021 -10.3689 2.1396 33 1 2.7123 -8.5932 -2.1340 34 1 5.5175 -10.1163 -2.7575 35 1 4.0162 -11.0473 -3.0744 36 1 4.6439 -12.7919 -1.6061 37 1 6.2983 -12.2114 -1.9815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839232939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:59 Heat of formation + Delta-G solvation = -106.495847 kcal Electronic energy + Delta-G solvation = -20010.667268 eV Core-core repulsion = 16718.023736 eV Total energy + Delta-G solvation = -3292.643532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29286 -39.96257 -37.87870 -35.98632 -33.35362 -32.94307 -32.35495 -30.27931 -29.47633 -27.69560 -24.96003 -23.68849 -22.30690 -21.90342 -20.89856 -20.15868 -17.61355 -17.34730 -16.98590 -16.42280 -16.14427 -16.04981 -15.75252 -14.98637 -14.49805 -14.30123 -13.90536 -13.44197 -13.31659 -13.19880 -12.87964 -12.47022 -12.37087 -12.09309 -12.04014 -11.83876 -11.19643 -11.09514 -11.01054 -10.91421 -10.72493 -10.69215 -10.18742 -9.62989 -9.61092 -9.31171 -9.03040 -8.44170 -8.21967 -6.10441 -4.14852 1.09944 1.20008 2.61305 3.02075 3.14934 3.30107 3.34047 3.37566 3.68879 4.14683 4.28882 4.39780 4.59748 4.63162 4.72242 4.93379 5.05258 5.16828 5.25265 5.26038 5.34807 5.41867 5.42943 5.48283 5.53650 5.89516 6.05891 6.10381 6.12679 6.20445 6.38463 6.43203 6.64767 6.98408 7.04059 7.56239 7.62529 7.87077 8.20570 8.29129 8.90550 9.49534 11.01051 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041836 B = 0.002727 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.120766 B =10266.510673 C =10425.838331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.359 6.359 12 C 0.453 3.547 13 O -0.510 6.510 14 C -0.071 4.071 15 C -0.098 4.098 16 C -0.067 4.067 17 C -0.136 4.136 18 C 0.103 3.897 19 C -0.176 4.176 20 C -0.052 4.052 21 C -0.110 4.110 22 C 0.052 3.948 23 O -0.307 6.307 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 -24.213 -2.431 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.275 6.275 12 C 0.296 3.704 13 O -0.399 6.399 14 C -0.109 4.109 15 C -0.098 4.098 16 C -0.085 4.085 17 C -0.155 4.155 18 C 0.059 3.941 19 C -0.177 4.177 20 C -0.070 4.070 21 C -0.147 4.147 22 C -0.023 4.023 23 O -0.221 6.221 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.479 -24.117 -2.293 24.838 hybrid contribution 0.577 1.060 -0.198 1.223 sum 6.055 -23.057 -2.491 23.969 Atomic orbital electron populations 1.69962 1.06089 1.27099 1.49737 1.24978 0.94920 0.99370 0.94857 0.86531 0.79487 0.82478 0.78797 1.20068 1.21108 1.20061 1.20951 0.93149 0.90172 1.52273 0.92334 1.19161 0.94182 0.89039 0.98847 1.23623 0.96335 0.78837 1.00889 1.86518 1.42465 1.15814 1.82719 1.23435 0.86678 0.87119 0.73215 1.90655 1.15757 1.88246 1.45263 1.20216 0.96960 0.87032 1.06661 1.19168 0.99659 0.97754 0.93206 1.20750 0.95195 0.94623 0.97903 1.20182 0.99472 1.00256 0.95598 1.19589 0.89648 0.90275 0.94635 1.20663 1.01408 1.01103 0.94480 1.20109 0.94783 0.94177 0.97918 1.21788 1.00084 0.95742 0.97076 1.23816 1.02491 0.96359 0.79643 1.86810 1.50817 1.51972 1.32481 0.92648 0.95371 0.95360 0.92365 0.92412 0.86948 0.86802 0.84948 0.85330 0.85691 0.89091 0.89043 0.90588 0.87687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 10 C 0.08 1.70 5.40 37.15 0.20 1.90 16 11 O -0.36 -7.11 10.22 -39.25 -0.40 -7.51 16 12 C 0.45 7.77 7.95 36.00 0.29 8.06 16 13 O -0.51 -10.27 15.78 -18.75 -0.30 -10.57 16 14 C -0.07 -0.84 5.95 -29.04 -0.17 -1.01 16 15 C -0.10 -1.19 4.38 -104.56 -0.46 -1.65 16 16 C -0.07 -0.77 9.68 -39.68 -0.38 -1.16 16 17 C -0.14 -1.59 10.06 -39.30 -0.40 -1.98 16 18 C 0.10 1.27 7.04 -38.92 -0.27 0.99 16 19 C -0.18 -2.01 6.27 -104.09 -0.65 -2.67 16 20 C -0.05 -0.61 9.69 -39.75 -0.39 -1.00 16 21 C -0.11 -0.89 7.11 -26.51 -0.19 -1.08 16 22 C 0.05 0.39 8.01 38.06 0.30 0.69 16 23 O -0.31 -3.53 11.10 -20.14 -0.22 -3.75 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 28 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 29 H 0.11 1.07 8.09 -51.93 -0.42 0.65 16 30 H 0.11 1.07 8.09 -51.93 -0.42 0.65 16 31 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -33.49 324.25 -8.03 -41.52 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -5.03 Total: -3.35 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -2.68 Total: -11.99 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.92 Total: -21.83 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.49 -8.03 -41.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839232939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.981 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds