Wall clock time and date at job start Mon Mar 30 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99820 * 2 1 4 4 H 1.48504 * 109.47111 * 240.00128 * 3 2 1 5 5 H 1.48493 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46820 * 120.00741 * 3 2 1 7 7 C 1.37871 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47666 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47540 * 180.02562 * 10 9 7 12 12 C 1.34227 * 117.00430 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99463 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00391 * 179.97438 * 12 11 10 15 15 C 1.50694 * 109.47184 * 179.97438 * 14 12 11 16 16 C 1.38291 * 120.11946 * 90.00193 * 15 14 12 17 17 C 1.37929 * 120.35446 * 180.17130 * 16 15 14 18 18 C 1.39289 * 120.24278 * 0.06555 * 17 16 15 19 19 C 1.38981 * 118.85498 * 359.58943 * 18 17 16 20 20 C 1.37660 * 120.77699 * 0.54611 * 19 18 17 21 21 C 1.51649 * 106.97907 * 180.57567 * 19 18 17 22 22 C 1.54713 * 101.93881 * 15.71381 * 21 19 18 23 23 O 1.36126 * 129.87617 * 179.56466 * 18 17 16 24 24 H 0.97000 * 119.99744 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46640 * 60.00142 * 9 7 2 26 26 H 1.08999 * 109.47254 * 300.00836 * 9 7 2 27 27 H 1.09001 * 109.47079 * 60.00283 * 10 9 7 28 28 H 1.09004 * 109.47155 * 300.00209 * 10 9 7 29 29 H 1.09002 * 109.46689 * 59.99565 * 14 12 11 30 30 H 1.09006 * 109.46910 * 300.00193 * 14 12 11 31 31 H 1.08007 * 119.81963 * 0.19443 * 16 15 14 32 32 H 1.07996 * 119.87833 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.98294 * 179.61345 * 20 19 18 34 34 H 1.09002 * 110.94508 * 257.54041 * 21 19 18 35 35 H 1.08997 * 110.93949 * 133.88365 * 21 19 18 36 36 H 1.09003 * 110.74698 * 92.94680 * 22 21 19 37 37 H 1.09001 * 110.74689 * 216.11069 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 8 1.5192 -4.9195 -0.0011 12 6 2.2502 -6.0453 -0.0007 13 8 3.4569 -5.9820 -0.0003 14 6 1.5661 -7.3880 -0.0007 15 6 2.6040 -8.4806 -0.0008 16 6 3.0820 -8.9838 1.1954 17 6 4.0345 -9.9813 1.2010 18 6 4.5247 -10.4900 0.0005 19 6 4.0311 -9.9811 -1.1949 20 6 3.0824 -8.9836 -1.1975 21 6 4.7299 -10.7265 -2.3156 22 6 5.3262 -11.9426 -1.5680 23 8 5.4583 -11.4554 -0.2218 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.9436 -7.4786 -0.8909 30 1 0.9430 -7.4783 0.8891 31 1 2.7071 -8.5938 2.1302 32 1 4.4021 -10.3689 2.1396 33 1 2.7123 -8.5932 -2.1340 34 1 5.5175 -10.1163 -2.7575 35 1 4.0162 -11.0473 -3.0744 36 1 4.6439 -12.7919 -1.6061 37 1 6.2983 -12.2114 -1.9815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839232939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:59 Heat of formation + Delta-G solvation = -125.497948 kcal Electronic energy + Delta-G solvation = -20011.491261 eV Core-core repulsion = 16718.023736 eV Total energy + Delta-G solvation = -3293.467525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.10061 -41.37479 -38.82404 -37.51123 -35.44677 -33.71526 -33.34657 -32.23907 -30.21582 -28.75361 -26.89492 -24.44691 -23.50596 -22.91022 -22.53473 -21.36519 -18.98872 -18.37713 -18.11439 -17.90107 -17.44423 -17.30599 -16.96420 -16.46998 -15.99346 -15.23301 -15.08028 -14.53248 -14.38492 -14.35068 -14.15406 -13.89641 -13.43622 -13.26944 -13.00728 -12.91859 -12.79000 -12.62051 -12.55108 -12.52813 -11.88531 -11.78641 -11.70085 -11.51451 -11.45660 -11.29046 -10.61068 -9.87398 -9.07381 -8.27322 -6.40617 0.21012 0.33930 1.24493 1.40667 1.44125 1.52093 1.83895 2.31288 2.39894 2.73370 3.06917 3.42991 3.57364 3.72915 3.91434 3.98649 4.15118 4.16180 4.23031 4.28624 4.36766 4.39065 4.61612 4.62440 4.65310 4.70699 4.85570 4.87431 5.09918 5.19924 5.29058 5.36306 5.47154 5.52341 5.56323 5.63521 5.76193 6.06671 6.18959 6.71920 6.80684 7.29141 8.85033 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.041836 B = 0.002727 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.120766 B =10266.510673 C =10425.838331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.365 6.365 12 C 0.453 3.547 13 O -0.542 6.542 14 C -0.059 4.059 15 C -0.113 4.113 16 C -0.075 4.075 17 C -0.150 4.150 18 C 0.087 3.913 19 C -0.188 4.188 20 C -0.064 4.064 21 C -0.108 4.108 22 C 0.047 3.953 23 O -0.326 6.326 24 H 0.268 0.732 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.660 -24.893 -2.922 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.081 0.919 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.282 6.282 12 C 0.297 3.703 13 O -0.432 6.432 14 C -0.096 4.096 15 C -0.114 4.114 16 C -0.093 4.093 17 C -0.169 4.169 18 C 0.042 3.958 19 C -0.189 4.189 20 C -0.082 4.082 21 C -0.145 4.145 22 C -0.027 4.027 23 O -0.241 6.241 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.035 -24.829 -2.789 25.703 hybrid contribution 0.415 1.146 -0.058 1.220 sum 6.449 -23.683 -2.847 24.710 Atomic orbital electron populations 1.70080 1.07765 1.28365 1.50290 1.25946 0.95848 1.03348 0.94052 0.85395 0.78226 0.77524 0.79285 1.19096 1.20356 1.19121 1.21354 0.93648 0.91388 1.52656 0.91882 1.18971 0.94322 0.90550 0.96756 1.23104 0.95001 0.79389 1.00706 1.86515 1.42627 1.15782 1.83280 1.24529 0.86521 0.87673 0.71537 1.90642 1.17318 1.88520 1.46745 1.20359 0.96892 0.83072 1.09292 1.19313 1.00282 0.98105 0.93654 1.21010 0.95126 0.94577 0.98555 1.20450 0.99695 1.00472 0.96267 1.19885 0.89953 0.90771 0.95226 1.21072 1.01204 1.01008 0.95611 1.20373 0.94991 0.94403 0.98437 1.21892 1.00333 0.95582 0.96704 1.24134 1.04319 0.96439 0.77817 1.86777 1.50777 1.51890 1.34663 0.92283 0.97414 0.97419 0.92501 0.92533 0.84234 0.84009 0.83417 0.84158 0.84455 0.88937 0.86824 0.88946 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.29 21.44 0.28 -55.18 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.55 -31.58 9.11 25.60 0.23 -31.35 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.68 5.35 29.85 0.16 1.84 16 10 C 0.09 4.15 5.40 71.98 0.39 4.54 16 11 O -0.37 -14.38 10.22 -51.39 -0.53 -14.90 16 12 C 0.45 15.12 7.95 71.24 0.57 15.68 16 13 O -0.54 -21.63 15.78 21.96 0.35 -21.29 16 14 C -0.06 -1.27 5.95 29.10 0.17 -1.10 16 15 C -0.11 -2.60 4.38 -19.83 -0.09 -2.69 16 16 C -0.07 -1.66 9.68 22.21 0.21 -1.45 16 17 C -0.15 -3.42 10.06 22.45 0.23 -3.20 16 18 C 0.09 2.07 7.04 22.70 0.16 2.23 16 19 C -0.19 -4.10 6.27 -19.52 -0.12 -4.22 16 20 C -0.06 -1.43 9.69 22.16 0.21 -1.22 16 21 C -0.11 -1.55 7.11 30.74 0.22 -1.33 16 22 C 0.05 0.61 8.01 72.57 0.58 1.19 16 23 O -0.33 -7.20 11.10 -94.99 -1.05 -8.26 16 24 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 28 H 0.06 2.56 8.13 -2.39 -0.02 2.54 16 29 H 0.14 2.27 8.09 -2.39 -0.02 2.25 16 30 H 0.14 2.28 8.09 -2.38 -0.02 2.26 16 31 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -72.57 324.25 5.53 -67.04 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.06 Total: 7.04 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 3.39 Total: -20.21 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.28 Total: -55.18 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -1.23 Total: -44.45 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -72.57 5.53 -67.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839232939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.462 kcal (2) G-P(sol) polarization free energy of solvation -72.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds