Wall clock time and date at job start Mon Mar 30 2020 01:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99962 * 2 1 4 4 H 1.48510 * 109.47031 * 239.99817 * 3 2 1 5 5 H 1.48500 * 109.47510 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47409 * 119.99951 * 3 2 1 7 7 C 1.37872 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47045 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.34234 * 116.99947 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99997 * 179.72219 * 12 11 10 15 15 H 1.09004 * 115.54941 * 34.28088 * 14 12 11 16 16 C 1.52998 * 117.50123 * 248.61202 * 14 12 11 17 17 C 1.52991 * 117.50018 * 179.97438 * 14 12 11 18 18 H 1.09005 * 117.49707 * 0.02562 * 17 14 12 19 19 C 1.50697 * 117.50204 * 214.97808 * 17 14 12 20 20 C 1.38287 * 119.97466 * 300.00457 * 19 17 14 21 21 C 1.38251 * 120.11029 * 179.97438 * 20 19 17 22 22 C 1.38161 * 120.05423 * 359.95369 * 21 20 19 23 23 C 1.38708 * 119.94849 * 0.02579 * 22 21 20 24 24 O 1.35903 * 120.05728 * 179.97438 * 23 22 21 25 25 C 1.38132 * 119.96759 * 119.72572 * 19 17 14 26 26 H 0.97002 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47336 * 59.99637 * 9 7 2 28 28 H 1.08999 * 109.46911 * 299.99255 * 9 7 2 29 29 H 1.08997 * 109.47282 * 60.00186 * 10 9 7 30 30 H 1.09002 * 109.47256 * 299.99413 * 10 9 7 31 31 H 1.09002 * 117.49830 * 359.97438 * 16 14 12 32 32 H 1.08997 * 117.50044 * 144.99543 * 16 14 12 33 33 H 1.07999 * 119.94396 * 359.97438 * 20 19 17 34 34 H 1.08000 * 119.96763 * 179.97438 * 21 20 19 35 35 H 1.08003 * 120.02449 * 180.02562 * 22 21 20 36 36 H 0.96695 * 114.00268 * 89.99681 * 24 23 22 37 37 H 1.08001 * 120.03130 * 0.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9195 -0.0001 12 6 2.2503 -6.0453 -0.0007 13 8 3.4568 -5.9821 -0.0002 14 6 1.5661 -7.3880 0.0050 15 1 0.6264 -7.4392 -0.5450 16 6 1.6915 -8.2395 1.2699 17 6 2.4545 -8.6336 0.0034 18 1 3.5339 -8.4818 -0.0014 19 6 1.9635 -9.8376 -0.7584 20 6 0.7643 -10.4326 -0.4117 21 6 0.3110 -11.5370 -1.1090 22 6 1.0550 -12.0483 -2.1549 23 6 2.2579 -11.4530 -2.5049 24 8 2.9918 -11.9544 -3.5330 25 6 2.7090 -10.3424 -1.8060 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6043 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 2.2693 -7.8287 2.0979 32 1 0.8344 -8.8508 1.5522 33 1 0.1810 -10.0340 0.4051 34 1 -0.6257 -12.0001 -0.8360 35 1 0.7001 -12.9108 -2.6995 36 1 2.7778 -11.5690 -4.3936 37 1 3.6435 -9.8748 -2.0790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840617249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:12 Heat of formation + Delta-G solvation = -91.195602 kcal Electronic energy + Delta-G solvation = -19724.565699 eV Core-core repulsion = 16432.585636 eV Total energy + Delta-G solvation = -3291.980063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.58727 -39.82073 -37.94623 -36.45600 -35.57879 -33.35722 -31.28061 -30.33984 -29.81357 -25.92042 -24.36414 -23.94801 -22.80791 -21.17380 -20.84349 -20.03663 -18.27131 -17.64633 -16.86833 -16.46877 -16.02042 -15.92260 -15.64201 -15.42335 -14.76022 -14.53130 -13.99986 -13.49831 -13.27182 -12.88540 -12.63479 -12.38091 -12.27352 -12.04030 -11.83566 -11.27703 -11.08000 -11.03195 -10.89614 -10.75632 -10.71360 -10.60524 -10.24305 -9.66697 -9.64925 -9.33144 -9.08976 -8.82726 -8.45503 -6.11662 -4.16289 0.88246 0.99549 2.36336 2.97009 3.28828 3.29173 3.33293 3.37260 3.68434 3.95091 4.34074 4.40753 4.49013 4.54712 4.68172 4.80270 4.86957 5.02110 5.21670 5.24805 5.25580 5.45482 5.55675 5.62896 5.76492 5.81729 6.06714 6.07019 6.09108 6.11070 6.28414 6.48698 6.61371 6.95964 7.33426 7.53965 7.60584 7.85123 8.16813 8.24690 8.89033 9.48139 10.99843 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036180 B = 0.002634 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.718738 B =10627.868919 C =10777.283049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.351 6.351 12 C 0.485 3.515 13 O -0.518 6.518 14 C -0.149 4.149 15 H 0.137 0.863 16 C -0.139 4.139 17 C -0.089 4.089 18 H 0.130 0.870 19 C -0.034 4.034 20 C -0.127 4.127 21 C -0.100 4.100 22 C -0.150 4.150 23 C 0.106 3.894 24 O -0.500 6.500 25 C -0.134 4.134 26 H 0.264 0.736 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.391 0.609 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 -23.913 -2.573 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.267 6.267 12 C 0.328 3.672 13 O -0.407 6.407 14 C -0.168 4.168 15 H 0.154 0.846 16 C -0.176 4.176 17 C -0.107 4.107 18 H 0.148 0.852 19 C -0.034 4.034 20 C -0.145 4.145 21 C -0.118 4.118 22 C -0.168 4.168 23 C 0.062 3.938 24 O -0.311 6.311 25 C -0.152 4.152 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.247 0.753 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.588 -24.048 -2.137 24.150 hybrid contribution 0.342 1.322 -0.499 1.454 sum 0.930 -22.726 -2.636 22.898 Atomic orbital electron populations 1.69964 1.06102 1.27128 1.49663 1.24981 0.94924 0.99391 0.94832 0.86524 0.79481 0.82440 0.78799 1.20058 1.21099 1.20046 1.20941 0.93146 0.90129 1.52370 0.92305 1.19166 0.94174 0.88976 0.98901 1.23678 0.96415 0.78689 1.00973 1.86514 1.42272 1.15644 1.82297 1.22362 0.85862 0.86342 0.72620 1.90623 1.15676 1.88213 1.46226 1.21870 1.02282 0.87009 1.05686 0.84567 1.23213 1.02919 1.00480 0.91000 1.21178 0.99292 0.90984 0.99257 0.85226 1.18962 0.94418 0.94973 0.95062 1.21147 0.96123 0.96617 1.00611 1.21014 0.99613 0.96035 0.95141 1.21438 0.94296 1.01404 0.99684 1.18431 0.90738 0.93161 0.91493 1.84818 1.62298 1.65936 1.18032 1.21296 1.01150 0.95889 0.96880 0.92627 0.95346 0.95315 0.92266 0.92276 0.87305 0.86833 0.85254 0.85373 0.85474 0.75270 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 10 C 0.07 1.68 5.40 37.16 0.20 1.88 16 11 O -0.35 -7.11 10.22 -39.27 -0.40 -7.52 16 12 C 0.48 8.50 7.74 36.01 0.28 8.78 16 13 O -0.52 -10.21 16.01 -18.75 -0.30 -10.51 16 14 C -0.15 -1.88 5.93 -91.78 -0.54 -2.42 16 15 H 0.14 1.53 8.14 -51.93 -0.42 1.11 16 16 C -0.14 -1.37 9.56 -26.72 -0.26 -1.63 16 17 C -0.09 -0.97 5.55 -91.77 -0.51 -1.48 16 18 H 0.13 1.55 7.67 -51.93 -0.40 1.15 16 19 C -0.03 -0.34 5.61 -104.64 -0.59 -0.93 16 20 C -0.13 -1.09 9.30 -39.56 -0.37 -1.46 16 21 C -0.10 -0.78 10.04 -39.60 -0.40 -1.18 16 22 C -0.15 -1.26 9.99 -39.44 -0.39 -1.65 16 23 C 0.11 1.01 6.71 -39.22 -0.26 0.75 16 24 O -0.50 -4.30 13.50 -19.43 -0.26 -4.57 16 25 C -0.13 -1.36 9.68 -39.43 -0.38 -1.75 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 30 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.11 0.83 6.17 -51.93 -0.32 0.51 16 33 H 0.13 0.88 6.02 -52.49 -0.32 0.57 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.39 1.55 9.06 45.56 0.41 1.96 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -33.10 327.29 -8.06 -41.16 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -3.97 Total: -0.08 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -3.78 Total: -14.15 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.96 Total: -22.59 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.10 -8.06 -41.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840617249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.031 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds