Wall clock time and date at job start Mon Mar 30 2020 01:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99962 * 2 1 4 4 H 1.48510 * 109.47031 * 239.99817 * 3 2 1 5 5 H 1.48500 * 109.47510 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47409 * 119.99951 * 3 2 1 7 7 C 1.37872 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47045 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46980 * 180.02562 * 10 9 7 12 12 C 1.34234 * 116.99947 * 179.97438 * 11 10 9 13 13 O 1.20822 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99997 * 179.72219 * 12 11 10 15 15 H 1.09004 * 115.54941 * 34.28088 * 14 12 11 16 16 C 1.52998 * 117.50123 * 248.61202 * 14 12 11 17 17 C 1.52991 * 117.50018 * 179.97438 * 14 12 11 18 18 H 1.09005 * 117.49707 * 0.02562 * 17 14 12 19 19 C 1.50697 * 117.50204 * 214.97808 * 17 14 12 20 20 C 1.38287 * 119.97466 * 300.00457 * 19 17 14 21 21 C 1.38251 * 120.11029 * 179.97438 * 20 19 17 22 22 C 1.38161 * 120.05423 * 359.95369 * 21 20 19 23 23 C 1.38708 * 119.94849 * 0.02579 * 22 21 20 24 24 O 1.35903 * 120.05728 * 179.97438 * 23 22 21 25 25 C 1.38132 * 119.96759 * 119.72572 * 19 17 14 26 26 H 0.97002 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47336 * 59.99637 * 9 7 2 28 28 H 1.08999 * 109.46911 * 299.99255 * 9 7 2 29 29 H 1.08997 * 109.47282 * 60.00186 * 10 9 7 30 30 H 1.09002 * 109.47256 * 299.99413 * 10 9 7 31 31 H 1.09002 * 117.49830 * 359.97438 * 16 14 12 32 32 H 1.08997 * 117.50044 * 144.99543 * 16 14 12 33 33 H 1.07999 * 119.94396 * 359.97438 * 20 19 17 34 34 H 1.08000 * 119.96763 * 179.97438 * 21 20 19 35 35 H 1.08003 * 120.02449 * 180.02562 * 22 21 20 36 36 H 0.96695 * 114.00268 * 89.99681 * 24 23 22 37 37 H 1.08001 * 120.03130 * 0.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9195 -0.0001 12 6 2.2503 -6.0453 -0.0007 13 8 3.4568 -5.9821 -0.0002 14 6 1.5661 -7.3880 0.0050 15 1 0.6264 -7.4392 -0.5450 16 6 1.6915 -8.2395 1.2699 17 6 2.4545 -8.6336 0.0034 18 1 3.5339 -8.4818 -0.0014 19 6 1.9635 -9.8376 -0.7584 20 6 0.7643 -10.4326 -0.4117 21 6 0.3110 -11.5370 -1.1090 22 6 1.0550 -12.0483 -2.1549 23 6 2.2579 -11.4530 -2.5049 24 8 2.9918 -11.9544 -3.5330 25 6 2.7090 -10.3424 -1.8060 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6043 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 2.2693 -7.8287 2.0979 32 1 0.8344 -8.8508 1.5522 33 1 0.1810 -10.0340 0.4051 34 1 -0.6257 -12.0001 -0.8360 35 1 0.7001 -12.9108 -2.6995 36 1 2.7778 -11.5690 -4.3936 37 1 3.6435 -9.8748 -2.0790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840617249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:12 Heat of formation + Delta-G solvation = -111.162369 kcal Electronic energy + Delta-G solvation = -19725.431523 eV Core-core repulsion = 16432.585636 eV Total energy + Delta-G solvation = -3292.845887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77279 -40.75971 -38.88513 -37.67593 -36.63332 -35.46897 -32.42454 -31.90138 -30.51339 -27.60587 -25.81732 -24.80651 -23.49861 -22.94856 -21.89934 -21.21889 -19.25626 -18.79811 -18.29489 -17.69775 -17.49657 -17.40518 -16.61294 -16.40665 -16.10746 -15.58953 -15.04679 -14.86267 -14.52984 -14.38562 -13.76904 -13.56418 -13.23522 -13.16639 -13.01121 -12.74873 -12.62434 -12.60224 -12.51352 -11.97071 -11.75903 -11.71483 -11.55513 -11.51413 -11.37527 -11.31541 -10.62542 -9.77476 -9.50846 -8.28559 -6.42240 0.20558 0.33713 1.02671 1.39891 1.43828 1.51352 1.66318 2.38548 2.49742 2.88644 3.05716 3.25214 3.52381 3.57196 3.71918 3.89199 3.99313 4.13882 4.18491 4.21023 4.22639 4.33116 4.62168 4.64915 4.69144 4.85124 4.95187 4.98922 5.05166 5.23548 5.43727 5.44828 5.47445 5.51250 5.59407 5.71845 5.89770 6.04284 6.67559 6.72376 6.83469 7.27651 8.83949 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036180 B = 0.002634 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.718738 B =10627.868919 C =10777.283049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.032 3.968 10 C 0.090 3.910 11 O -0.361 6.361 12 C 0.482 3.518 13 O -0.544 6.544 14 C -0.163 4.163 15 H 0.153 0.847 16 C -0.117 4.117 17 C -0.082 4.082 18 H 0.113 0.887 19 C -0.046 4.046 20 C -0.129 4.129 21 C -0.097 4.097 22 C -0.153 4.153 23 C 0.096 3.904 24 O -0.513 6.513 25 C -0.154 4.154 26 H 0.269 0.731 27 H 0.006 0.994 28 H 0.008 0.992 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.144 0.856 36 H 0.409 0.591 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 -25.014 -2.222 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.277 6.277 12 C 0.327 3.673 13 O -0.435 6.435 14 C -0.182 4.182 15 H 0.171 0.829 16 C -0.154 4.154 17 C -0.100 4.100 18 H 0.131 0.869 19 C -0.046 4.046 20 C -0.146 4.146 21 C -0.115 4.115 22 C -0.171 4.171 23 C 0.052 3.948 24 O -0.326 6.326 25 C -0.173 4.173 26 H 0.077 0.923 27 H 0.024 0.976 28 H 0.026 0.974 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.268 0.732 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.150 -25.171 -1.800 25.236 hybrid contribution 0.469 1.542 -0.647 1.737 sum 0.619 -23.629 -2.447 23.763 Atomic orbital electron populations 1.70085 1.07821 1.28417 1.50223 1.25966 0.95856 1.03420 0.93987 0.85372 0.78205 0.77387 0.79326 1.19094 1.20358 1.19003 1.21345 0.93694 0.91262 1.52771 0.91733 1.18973 0.94307 0.90543 0.96731 1.23189 0.95114 0.79090 1.00945 1.86506 1.42551 1.15752 1.82929 1.23337 0.85803 0.86926 0.71220 1.90605 1.16939 1.88495 1.47460 1.21954 1.03054 0.84418 1.08784 0.82920 1.23445 1.03501 0.98634 0.89802 1.21107 0.98323 0.90383 1.00212 0.86912 1.18940 0.95389 0.94924 0.95329 1.21406 0.95459 0.96642 1.01105 1.21374 1.00368 0.95484 0.94285 1.21713 0.93782 1.01721 0.99930 1.18576 0.91316 0.93112 0.91804 1.84764 1.62637 1.66228 1.19015 1.21380 1.01358 0.96802 0.97746 0.92253 0.97554 0.97387 0.92119 0.92362 0.87527 0.83348 0.83146 0.82550 0.83788 0.73198 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.55 -31.64 9.11 25.60 0.23 -31.40 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.72 5.35 29.85 0.16 1.88 16 10 C 0.09 4.13 5.40 71.98 0.39 4.52 16 11 O -0.36 -14.86 10.22 -51.46 -0.53 -15.38 16 12 C 0.48 16.99 7.74 71.24 0.55 17.54 16 13 O -0.54 -21.83 16.01 21.98 0.35 -21.48 16 14 C -0.16 -3.93 5.93 -11.54 -0.07 -4.00 16 15 H 0.15 3.17 8.14 -2.38 -0.02 3.15 16 16 C -0.12 -2.05 9.56 30.60 0.29 -1.76 16 17 C -0.08 -1.72 5.55 -11.54 -0.06 -1.79 16 18 H 0.11 2.75 7.67 -2.38 -0.02 2.73 16 19 C -0.05 -0.86 5.61 -19.88 -0.11 -0.97 16 20 C -0.13 -1.83 9.30 22.28 0.21 -1.62 16 21 C -0.10 -1.21 10.04 22.25 0.22 -0.99 16 22 C -0.15 -2.22 9.99 22.36 0.22 -2.00 16 23 C 0.10 1.74 6.71 22.51 0.15 1.89 16 24 O -0.51 -8.45 13.50 -92.46 -1.25 -9.70 16 25 C -0.15 -3.11 9.68 22.37 0.22 -2.90 16 26 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 2.74 8.13 -2.39 -0.02 2.72 16 30 H 0.06 2.66 8.13 -2.39 -0.02 2.64 16 31 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.15 1.55 6.17 -2.39 -0.01 1.54 16 33 H 0.15 1.42 6.02 -2.91 -0.02 1.40 16 34 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 35 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.41 2.94 9.06 -74.06 -0.67 2.27 16 37 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -72.05 327.29 4.17 -67.88 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.42 Total: 9.07 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 2.87 Total: -20.74 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.28 Total: -55.34 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -1.42 Total: -46.56 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.05 4.17 -67.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840617249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.283 kcal (2) G-P(sol) polarization free energy of solvation -72.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds