Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.68063 * 2 1 4 4 C 1.53401 * 109.68655 * 120.52486 * 2 1 3 5 5 C 1.53076 * 108.31213 * 184.40924 * 4 2 1 6 6 H 1.08995 * 109.43469 * 71.89370 * 5 4 2 7 7 C 1.50705 * 109.43329 * 191.75417 * 5 4 2 8 8 O 1.21214 * 119.99499 * 0.22432 * 7 5 4 9 9 O 1.34306 * 120.00021 * 180.21777 * 7 5 4 10 10 C 1.34922 * 117.00040 * 179.97438 * 9 7 5 11 11 H 1.07996 * 119.99977 * 0.02562 * 10 9 7 12 12 C 1.38753 * 120.00082 * 180.02562 * 10 9 7 13 13 N 1.31446 * 119.99926 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00034 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47087 * 59.99948 * 14 12 10 16 16 H 1.48504 * 109.47126 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46817 * 300.00222 * 14 12 10 18 18 C 1.50762 * 109.68744 * 311.82007 * 5 4 2 19 19 C 1.38507 * 118.76185 * 197.74532 * 18 5 4 20 20 C 1.38107 * 120.31166 * 180.25986 * 19 18 5 21 21 C 1.38283 * 119.98907 * 0.05193 * 20 19 18 22 22 C 1.37975 * 119.95504 * 359.89748 * 21 20 19 23 23 C 1.38374 * 121.40718 * 17.88775 * 18 5 4 24 24 O 1.35839 * 121.79973 * 359.34425 * 23 18 5 25 25 H 1.08998 * 109.47187 * 299.47047 * 1 2 3 26 26 H 1.08997 * 109.47353 * 59.47785 * 1 2 3 27 27 H 1.09008 * 109.46812 * 179.48106 * 1 2 3 28 28 H 1.09002 * 109.47677 * 180.52142 * 3 2 1 29 29 H 1.08997 * 109.47496 * 300.52650 * 3 2 1 30 30 H 1.09007 * 109.46827 * 60.52539 * 3 2 1 31 31 H 1.09001 * 109.69636 * 64.70343 * 4 2 1 32 32 H 1.09004 * 109.69342 * 304.11098 * 4 2 1 33 33 H 0.97004 * 119.99848 * 179.97438 * 13 12 10 34 34 H 1.07997 * 119.84786 * 0.23227 * 19 18 5 35 35 H 1.08002 * 120.00556 * 180.02562 * 20 19 18 36 36 H 1.08004 * 120.02580 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.88701 * 179.70591 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4406 0.0000 4 6 2.0468 -0.7336 1.2442 5 6 3.5730 -0.6194 1.2705 6 1 3.8560 0.4026 1.5222 7 6 4.1285 -1.5621 2.3069 8 8 3.3787 -2.2588 2.9562 9 8 5.4543 -1.6303 2.5108 10 6 5.8854 -2.4941 3.4533 11 1 5.1741 -3.0919 4.0038 12 6 7.2426 -2.6144 3.7154 13 7 8.1083 -1.8865 3.0457 14 14 7.8396 -3.8108 5.0199 15 1 7.4208 -5.1885 4.6568 16 1 9.3208 -3.7499 5.1068 17 1 7.2516 -3.4448 6.3334 18 6 4.1325 -0.9761 -0.0832 19 6 5.4756 -1.2987 -0.1854 20 6 6.0228 -1.6251 -1.4107 21 6 5.2290 -1.6298 -2.5430 22 6 3.8902 -1.3103 -2.4471 23 6 3.3349 -0.9834 -1.2140 24 8 2.0111 -0.6836 -1.1581 25 1 -0.3633 0.5056 0.8947 26 1 -0.3634 0.5219 -0.8852 27 1 -0.3633 -1.0277 -0.0093 28 1 3.1352 1.4367 -0.0094 29 1 1.6762 1.9586 -0.8852 30 1 1.6915 1.9530 0.8947 31 1 1.7576 -1.7836 1.1981 32 1 1.6286 -0.2758 2.1407 33 1 9.0572 -1.9703 3.2292 34 1 6.0980 -1.2945 0.6971 35 1 7.0706 -1.8762 -1.4846 36 1 5.6564 -1.8846 -3.5016 37 1 3.2723 -1.3097 -3.3330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840661774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = -99.054066 kcal Electronic energy + Delta-G solvation = -22039.756355 eV Core-core repulsion = 18747.435523 eV Total energy + Delta-G solvation = -3292.320832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94944 -38.87936 -37.52926 -35.46246 -34.33211 -32.51685 -32.06292 -29.77183 -28.24196 -27.40357 -25.94216 -24.17773 -22.56883 -22.10271 -20.15322 -18.70454 -17.92758 -17.33294 -16.42314 -16.14272 -15.64537 -14.98329 -14.71630 -14.47443 -14.38194 -14.00340 -13.67037 -13.30502 -12.98278 -12.68378 -12.44252 -12.22050 -12.16738 -12.07181 -11.81380 -11.64783 -11.23950 -11.20027 -10.96528 -10.64810 -10.51190 -10.46065 -10.40036 -10.06149 -9.73831 -9.17062 -8.59676 -8.33639 -7.79001 -6.44440 -4.11564 1.66949 1.85667 3.10917 3.17669 3.21153 3.38002 3.48141 3.85117 4.15623 4.47350 4.70869 4.83292 4.90564 5.04550 5.16945 5.19046 5.34443 5.40931 5.53306 5.55965 5.65441 5.70056 5.78909 5.83904 5.92953 5.98235 6.03210 6.14977 6.23949 6.39901 6.46276 6.65477 6.75218 7.02124 7.08000 7.29495 7.38100 7.77696 7.93097 8.66305 9.05290 9.80038 10.73230 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.006121 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.843141 B = 4573.484579 C = 5487.385113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.113 3.887 3 C -0.177 4.177 4 C -0.127 4.127 5 C -0.028 4.028 6 H 0.106 0.894 7 C 0.408 3.592 8 O -0.550 6.550 9 O -0.209 6.209 10 C -0.384 4.384 11 H 0.094 0.906 12 C 0.045 3.955 13 N -0.865 5.865 14 Si 0.942 3.058 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.270 1.270 18 C -0.157 4.157 19 C -0.066 4.066 20 C -0.154 4.154 21 C -0.089 4.089 22 C -0.165 4.165 23 C 0.138 3.862 24 O -0.312 6.312 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.270 0.730 34 H 0.165 0.835 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.439 5.356 -8.739 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.075 3.925 3 C -0.234 4.234 4 C -0.164 4.164 5 C -0.047 4.047 6 H 0.123 0.877 7 C 0.254 3.746 8 O -0.447 6.447 9 O -0.116 6.116 10 C -0.460 4.460 11 H 0.112 0.888 12 C -0.159 4.159 13 N -0.502 5.502 14 Si 0.767 3.233 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.195 1.195 18 C -0.158 4.158 19 C -0.084 4.084 20 C -0.172 4.172 21 C -0.108 4.108 22 C -0.183 4.183 23 C 0.093 3.907 24 O -0.227 6.227 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.182 0.818 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.530 5.173 -8.706 13.241 hybrid contribution 0.512 -0.549 0.845 1.131 sum -8.017 4.624 -7.861 12.143 Atomic orbital electron populations 1.21746 0.91379 1.03321 1.02768 1.21883 0.95000 0.91360 0.84240 1.22450 1.02703 0.95414 1.02863 1.22104 0.93461 1.02967 0.97910 1.19726 0.95027 0.99523 0.90447 0.87650 1.22792 0.82992 0.84306 0.84479 1.90551 1.59764 1.44663 1.49712 1.83817 1.20922 1.55504 1.51392 1.21186 0.91881 1.18368 1.14598 0.88803 1.25279 0.94581 0.97823 0.98261 1.69950 1.02483 1.38242 1.39520 0.85766 0.77618 0.79928 0.80023 1.19522 1.20361 1.19544 1.19508 0.95241 1.08262 0.92779 1.21936 0.94030 0.92596 0.99830 1.21083 1.00282 1.03367 0.92485 1.20913 0.92867 0.98439 0.98533 1.20412 0.95378 1.07447 0.95091 1.18589 0.82530 0.96427 0.93131 1.85964 1.21136 1.72889 1.42674 0.90401 0.91565 0.91439 0.91357 0.91650 0.90858 0.89400 0.89493 0.91973 0.81800 0.85897 0.85962 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.88 37.16 0.33 -1.12 16 2 C 0.11 1.56 1.13 -90.41 -0.10 1.46 16 3 C -0.18 -2.15 8.15 37.16 0.30 -1.84 16 4 C -0.13 -2.10 3.87 -26.48 -0.10 -2.20 16 5 C -0.03 -0.55 2.18 -92.85 -0.20 -0.75 16 6 H 0.11 1.87 7.00 -51.93 -0.36 1.51 16 7 C 0.41 10.13 7.00 36.01 0.25 10.39 16 8 O -0.55 -14.84 15.02 -19.05 -0.29 -15.13 16 9 O -0.21 -5.78 6.86 -20.69 -0.14 -5.92 16 10 C -0.38 -11.15 9.65 30.92 0.30 -10.85 16 11 H 0.09 2.77 6.86 -52.49 -0.36 2.41 16 12 C 0.04 1.23 5.49 -17.53 -0.10 1.13 16 13 N -0.87 -24.41 13.67 55.48 0.76 -23.65 16 14 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 C -0.16 -3.03 4.85 -104.44 -0.51 -3.53 16 19 C -0.07 -1.36 9.02 -39.53 -0.36 -1.72 16 20 C -0.15 -2.70 10.04 -39.61 -0.40 -3.09 16 21 C -0.09 -1.35 10.04 -39.66 -0.40 -1.75 16 22 C -0.16 -2.57 9.94 -39.34 -0.39 -2.96 16 23 C 0.14 2.41 6.02 -39.20 -0.24 2.17 16 24 O -0.31 -5.01 9.68 -19.23 -0.19 -5.20 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.07 0.93 5.89 -51.93 -0.31 0.63 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.09 1.63 7.71 -51.93 -0.40 1.23 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.16 3.92 5.33 -52.49 -0.28 3.64 16 35 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 306.46 15.07 4.62 4.62 Total: -1.00 -31.84 306.46 -6.52 -38.35 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.65 Total: 5.52 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.61 Total: -14.67 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 0.76 Total: -23.65 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.61 Total: -26.25 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.84 -6.52 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840661774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.700 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds