Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.68063 * 2 1 4 4 C 1.53401 * 109.68655 * 120.52486 * 2 1 3 5 5 C 1.53076 * 108.31213 * 184.40924 * 4 2 1 6 6 H 1.08995 * 109.43469 * 71.89370 * 5 4 2 7 7 C 1.50705 * 109.43329 * 191.75417 * 5 4 2 8 8 O 1.21214 * 119.99499 * 0.22432 * 7 5 4 9 9 O 1.34306 * 120.00021 * 180.21777 * 7 5 4 10 10 C 1.34922 * 117.00040 * 179.97438 * 9 7 5 11 11 H 1.07996 * 119.99977 * 0.02562 * 10 9 7 12 12 C 1.38753 * 120.00082 * 180.02562 * 10 9 7 13 13 N 1.31446 * 119.99926 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00034 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47087 * 59.99948 * 14 12 10 16 16 H 1.48504 * 109.47126 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46817 * 300.00222 * 14 12 10 18 18 C 1.50762 * 109.68744 * 311.82007 * 5 4 2 19 19 C 1.38507 * 118.76185 * 197.74532 * 18 5 4 20 20 C 1.38107 * 120.31166 * 180.25986 * 19 18 5 21 21 C 1.38283 * 119.98907 * 0.05193 * 20 19 18 22 22 C 1.37975 * 119.95504 * 359.89748 * 21 20 19 23 23 C 1.38374 * 121.40718 * 17.88775 * 18 5 4 24 24 O 1.35839 * 121.79973 * 359.34425 * 23 18 5 25 25 H 1.08998 * 109.47187 * 299.47047 * 1 2 3 26 26 H 1.08997 * 109.47353 * 59.47785 * 1 2 3 27 27 H 1.09008 * 109.46812 * 179.48106 * 1 2 3 28 28 H 1.09002 * 109.47677 * 180.52142 * 3 2 1 29 29 H 1.08997 * 109.47496 * 300.52650 * 3 2 1 30 30 H 1.09007 * 109.46827 * 60.52539 * 3 2 1 31 31 H 1.09001 * 109.69636 * 64.70343 * 4 2 1 32 32 H 1.09004 * 109.69342 * 304.11098 * 4 2 1 33 33 H 0.97004 * 119.99848 * 179.97438 * 13 12 10 34 34 H 1.07997 * 119.84786 * 0.23227 * 19 18 5 35 35 H 1.08002 * 120.00556 * 180.02562 * 20 19 18 36 36 H 1.08004 * 120.02580 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.88701 * 179.70591 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0453 1.4406 0.0000 4 6 2.0468 -0.7336 1.2442 5 6 3.5730 -0.6194 1.2705 6 1 3.8560 0.4026 1.5222 7 6 4.1285 -1.5621 2.3069 8 8 3.3787 -2.2588 2.9562 9 8 5.4543 -1.6303 2.5108 10 6 5.8854 -2.4941 3.4533 11 1 5.1741 -3.0919 4.0038 12 6 7.2426 -2.6144 3.7154 13 7 8.1083 -1.8865 3.0457 14 14 7.8396 -3.8108 5.0199 15 1 7.4208 -5.1885 4.6568 16 1 9.3208 -3.7499 5.1068 17 1 7.2516 -3.4448 6.3334 18 6 4.1325 -0.9761 -0.0832 19 6 5.4756 -1.2987 -0.1854 20 6 6.0228 -1.6251 -1.4107 21 6 5.2290 -1.6298 -2.5430 22 6 3.8902 -1.3103 -2.4471 23 6 3.3349 -0.9834 -1.2140 24 8 2.0111 -0.6836 -1.1581 25 1 -0.3633 0.5056 0.8947 26 1 -0.3634 0.5219 -0.8852 27 1 -0.3633 -1.0277 -0.0093 28 1 3.1352 1.4367 -0.0094 29 1 1.6762 1.9586 -0.8852 30 1 1.6915 1.9530 0.8947 31 1 1.7576 -1.7836 1.1981 32 1 1.6286 -0.2758 2.1407 33 1 9.0572 -1.9703 3.2292 34 1 6.0980 -1.2945 0.6971 35 1 7.0706 -1.8762 -1.4846 36 1 5.6564 -1.8846 -3.5016 37 1 3.2723 -1.3097 -3.3330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840661774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = -117.585323 kcal Electronic energy + Delta-G solvation = -22040.559930 eV Core-core repulsion = 18747.435523 eV Total energy + Delta-G solvation = -3293.124407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.35027 -40.78559 -38.82048 -37.44476 -35.77369 -34.34955 -33.65297 -31.13179 -29.55776 -28.32047 -27.89763 -25.82964 -23.91550 -23.44238 -21.91669 -20.11335 -19.91222 -18.95776 -18.12508 -17.50456 -17.11200 -16.64451 -16.30931 -16.17021 -16.02345 -15.28269 -15.09191 -14.73210 -14.43885 -14.19023 -13.86720 -13.59935 -13.42023 -13.20561 -13.10679 -12.98972 -12.87275 -12.55003 -12.46623 -12.32873 -12.20937 -12.06019 -11.76343 -11.63463 -11.37835 -11.11920 -10.70658 -9.76093 -9.13009 -8.55895 -6.35130 0.30388 0.48075 1.26340 1.31824 1.46781 1.57908 2.05417 2.21835 2.56471 2.89232 2.95732 3.43648 3.55194 3.64384 3.89746 3.93719 4.05340 4.19153 4.28316 4.42218 4.50592 4.56641 4.66752 4.71865 4.77229 4.83568 4.88677 4.99138 5.00830 5.12682 5.16538 5.20642 5.30888 5.38636 5.57396 5.67921 5.81731 5.89879 6.47895 6.58757 6.89055 7.70563 8.63444 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021486 B = 0.006121 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.843141 B = 4573.484579 C = 5487.385113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.112 3.888 3 C -0.175 4.175 4 C -0.123 4.123 5 C -0.022 4.022 6 H 0.117 0.883 7 C 0.402 3.598 8 O -0.579 6.579 9 O -0.226 6.226 10 C -0.426 4.426 11 H 0.077 0.923 12 C 0.003 3.997 13 N -0.894 5.894 14 Si 1.012 2.988 15 H -0.265 1.265 16 H -0.258 1.258 17 H -0.263 1.263 18 C -0.176 4.176 19 C -0.098 4.098 20 C -0.164 4.164 21 C -0.073 4.073 22 C -0.159 4.159 23 C 0.135 3.865 24 O -0.313 6.313 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.279 0.721 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.166 0.834 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.373 5.779 -10.366 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.075 3.925 3 C -0.232 4.232 4 C -0.160 4.160 5 C -0.041 4.041 6 H 0.135 0.865 7 C 0.250 3.750 8 O -0.477 6.477 9 O -0.133 6.133 10 C -0.502 4.502 11 H 0.095 0.905 12 C -0.198 4.198 13 N -0.531 5.531 14 Si 0.832 3.168 15 H -0.190 1.190 16 H -0.182 1.182 17 H -0.187 1.187 18 C -0.177 4.177 19 C -0.116 4.116 20 C -0.182 4.182 21 C -0.090 4.090 22 C -0.177 4.177 23 C 0.090 3.910 24 O -0.228 6.228 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.184 0.816 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.473 5.618 -10.350 15.114 hybrid contribution 0.764 -0.653 1.282 1.629 sum -8.710 4.965 -9.067 13.518 Atomic orbital electron populations 1.21801 0.88519 1.03672 1.04815 1.22166 0.96947 0.91570 0.81836 1.22450 1.01416 0.94418 1.04882 1.22138 0.91259 1.02137 1.00492 1.19831 0.96752 0.98328 0.89162 0.86531 1.23977 0.82066 0.84284 0.84650 1.90503 1.60091 1.46091 1.51046 1.83905 1.22477 1.55566 1.51399 1.21369 0.92703 1.19996 1.16124 0.90490 1.26411 0.93887 0.99299 1.00203 1.70042 1.03129 1.39259 1.40627 0.84760 0.77983 0.77215 0.76884 1.18989 1.18152 1.18710 1.19471 0.95128 1.09853 0.93237 1.21685 0.94515 0.95739 0.99697 1.21246 1.01124 1.03426 0.92380 1.21326 0.92421 0.96126 0.99174 1.20880 0.95909 1.05594 0.95364 1.18766 0.82937 0.96167 0.93128 1.85974 1.20178 1.73118 1.43506 0.88235 0.89636 0.91992 0.93373 0.89726 0.88793 0.91957 0.88188 0.91120 0.86134 0.85236 0.81631 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.88 71.98 0.64 -1.78 16 2 C 0.11 2.89 1.13 -10.66 -0.01 2.88 16 3 C -0.17 -3.83 8.15 71.98 0.59 -3.24 16 4 C -0.12 -4.08 3.87 30.75 0.12 -3.96 16 5 C -0.02 -0.89 2.18 -12.24 -0.03 -0.91 16 6 H 0.12 4.34 7.00 -2.39 -0.02 4.32 16 7 C 0.40 21.24 7.00 71.24 0.50 21.74 16 8 O -0.58 -33.07 15.02 20.76 0.31 -32.76 16 9 O -0.23 -13.37 6.86 14.89 0.10 -13.27 16 10 C -0.43 -26.15 9.65 67.94 0.66 -25.50 16 11 H 0.08 4.84 6.86 -2.91 -0.02 4.82 16 12 C 0.00 0.19 5.49 84.87 0.47 0.65 16 13 N -0.89 -52.05 13.67 21.62 0.30 -51.76 16 14 Si 1.01 43.76 29.55 68.60 2.03 45.79 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 18 C -0.18 -6.98 4.85 -19.75 -0.10 -7.07 16 19 C -0.10 -4.24 9.02 22.30 0.20 -4.04 16 20 C -0.16 -5.75 10.04 22.25 0.22 -5.52 16 21 C -0.07 -2.00 10.04 22.22 0.22 -1.78 16 22 C -0.16 -4.51 9.94 22.42 0.22 -4.29 16 23 C 0.14 4.56 6.02 22.52 0.14 4.70 16 24 O -0.31 -9.45 9.68 -91.74 -0.89 -10.34 16 25 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.05 1.26 5.89 -2.39 -0.01 1.25 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 2.38 7.71 -2.39 -0.02 2.36 16 32 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.12 6.29 5.33 -2.91 -0.02 6.27 16 35 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 36 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -73.67 306.46 6.76 -66.90 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 1.08 Total: 23.54 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 3.84 Total: -28.12 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.30 Total: -51.76 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -0.47 Total: -56.36 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.67 6.76 -66.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840661774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.681 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds