Wall clock time and date at job start Mon Mar 30 2020 01:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47005 * 2 1 4 4 C 1.50699 * 120.00152 * 87.71803 * 3 2 1 5 5 C 1.33097 * 119.99773 * 267.71805 * 3 2 1 6 6 C 1.46938 * 120.00157 * 7.86107 * 5 3 2 7 7 O 1.21543 * 119.99797 * 6.13351 * 6 5 3 8 8 O 1.34810 * 119.99677 * 186.13147 * 6 5 3 9 9 C 1.35912 * 116.99700 * 175.01519 * 8 6 5 10 10 C 1.38838 * 120.02192 * 255.36292 * 9 8 6 11 11 C 1.38180 * 120.07933 * 179.72194 * 10 9 8 12 12 C 1.38157 * 120.12628 * 0.23079 * 11 10 9 13 13 C 1.38898 * 120.04005 * 0.02562 * 12 11 10 14 14 O 1.35756 * 120.03465 * 180.02562 * 13 12 11 15 15 C 1.34832 * 116.99672 * 174.38684 * 14 13 12 16 16 H 1.08003 * 120.00169 * 5.06413 * 15 14 13 17 17 C 1.38651 * 120.00029 * 185.06377 * 15 14 13 18 18 N 1.31556 * 119.99976 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99867 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47408 * 89.99883 * 19 17 15 21 21 H 1.48509 * 109.47066 * 209.99888 * 19 17 15 22 22 H 1.48497 * 109.47597 * 329.99855 * 19 17 15 23 23 C 1.38577 * 120.02104 * 75.57086 * 9 8 6 24 24 H 1.08998 * 109.47244 * 60.00486 * 1 2 3 25 25 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47151 * 299.99575 * 1 2 3 27 27 H 1.09006 * 109.46565 * 239.99881 * 2 1 3 28 28 H 1.08990 * 109.47036 * 120.00116 * 2 1 3 29 29 H 1.08997 * 109.47089 * 269.99842 * 4 3 2 30 30 H 1.08994 * 109.46768 * 29.99872 * 4 3 2 31 31 H 1.09003 * 109.46778 * 149.99819 * 4 3 2 32 32 H 1.08006 * 119.99859 * 187.86250 * 5 3 2 33 33 H 1.08000 * 119.95703 * 0.02562 * 10 9 8 34 34 H 1.08007 * 119.93808 * 180.25525 * 11 10 9 35 35 H 1.07999 * 119.98194 * 180.02562 * 12 11 10 36 36 H 0.96997 * 120.00048 * 180.02562 * 18 17 15 37 37 H 1.08005 * 120.06790 * 0.02934 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2345 2.1486 1.3040 5 6 2.2974 2.0329 -1.1518 6 6 1.9396 1.3911 -2.4242 7 8 1.3029 0.3558 -2.4247 8 8 2.3174 1.9508 -3.5910 9 6 2.0455 1.2542 -4.7260 10 6 3.0645 0.5875 -5.3928 11 6 2.7883 -0.1257 -6.5436 12 6 1.4987 -0.1738 -7.0370 13 6 0.4763 0.4957 -6.3769 14 8 -0.7909 0.4479 -6.8614 15 6 -1.7546 1.0204 -6.1122 16 1 -1.4916 1.5599 -5.2142 17 6 -3.0834 0.9168 -6.4945 18 7 -3.4037 0.2602 -7.5886 19 14 -4.4184 1.7107 -5.4569 20 1 -4.6499 3.1003 -5.9267 21 1 -5.6749 0.9292 -5.5845 22 1 -3.9921 1.7337 -4.0347 23 6 0.7517 1.2126 -5.2207 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3151 2.6663 1.5775 30 1 2.4937 1.4321 2.0835 31 1 3.0410 2.8736 1.1942 32 1 2.7756 3.0013 -1.1511 33 1 4.0733 0.6224 -5.0089 34 1 3.5821 -0.6469 -7.0583 35 1 1.2855 -0.7323 -7.9364 36 1 -4.3332 0.1880 -7.8563 37 1 -0.0417 1.7338 -4.7055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:30 Heat of formation + Delta-G solvation = -63.606534 kcal Electronic energy + Delta-G solvation = -20954.007633 eV Core-core repulsion = 17663.223922 eV Total energy + Delta-G solvation = -3290.783711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.81672 -38.89704 -37.66255 -35.98941 -35.36301 -32.29268 -31.11655 -29.81813 -28.96836 -28.25191 -25.42565 -24.20193 -22.95175 -21.68899 -20.78884 -18.72378 -18.27303 -17.84110 -16.85862 -15.95558 -15.65951 -15.11379 -14.95708 -14.39222 -14.26312 -13.99636 -13.72502 -13.53790 -13.15875 -13.00625 -12.85801 -12.61656 -12.44600 -12.05467 -11.86516 -11.52691 -11.36667 -11.17124 -11.00893 -10.86138 -10.80641 -10.46992 -10.25450 -9.78854 -9.49044 -9.32062 -8.85967 -8.13123 -7.33371 -6.46879 -4.06036 1.10266 1.82737 2.23733 3.03491 3.11736 3.13617 3.18739 3.26587 3.96059 4.48214 4.55089 4.71026 5.04078 5.08798 5.17865 5.22777 5.26458 5.32981 5.49246 5.58324 5.60331 5.62316 5.80492 5.89448 6.02125 6.12881 6.18294 6.19724 6.23059 6.43629 6.53456 6.61649 6.95387 7.05581 7.12089 7.16528 7.35524 7.63768 7.97147 8.25532 8.98471 9.64874 10.70742 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.005772 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.518391 B = 4850.030774 C = 6324.588922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C -0.021 4.021 4 C -0.125 4.125 5 C -0.204 4.204 6 C 0.483 3.517 7 O -0.478 6.478 8 O -0.296 6.296 9 C 0.123 3.877 10 C -0.212 4.212 11 C -0.065 4.065 12 C -0.188 4.188 13 C 0.164 3.836 14 O -0.171 6.171 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.042 3.958 18 N -0.861 5.861 19 Si 0.940 3.060 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.229 4.229 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.271 0.729 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.594 2.829 14.478 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C -0.022 4.022 4 C -0.181 4.181 5 C -0.223 4.223 6 C 0.330 3.670 7 O -0.366 6.366 8 O -0.212 6.212 9 C 0.082 3.918 10 C -0.232 4.232 11 C -0.084 4.084 12 C -0.207 4.207 13 C 0.109 3.891 14 O -0.074 6.074 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.163 4.163 18 N -0.495 5.495 19 Si 0.764 3.236 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.249 4.249 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.046 2.358 14.120 17.489 hybrid contribution -0.670 0.528 0.468 0.973 sum 9.376 2.886 14.588 17.580 Atomic orbital electron populations 1.21554 0.93714 1.02234 1.01712 1.21123 0.97572 0.92233 1.03825 1.22696 0.89304 0.95803 0.94373 1.21001 1.02968 1.00286 0.93852 1.21675 1.09256 1.02799 0.88602 1.21780 0.77505 0.83070 0.84642 1.90853 1.35695 1.22906 1.87163 1.84581 1.74893 1.48017 1.13661 1.18198 0.93313 0.95208 0.85035 1.20509 0.98119 1.04319 1.00234 1.20479 0.95494 0.97359 0.95032 1.20321 0.91586 1.05681 1.03106 1.19119 0.86881 0.92223 0.90835 1.83997 1.11311 1.68191 1.43935 1.21317 0.84937 1.33074 1.07449 0.89187 1.25272 0.97182 0.96915 0.96917 1.70033 1.19039 1.38365 1.22077 0.85728 0.79450 0.78878 0.79536 1.19764 1.20105 1.19143 1.21206 0.95951 1.06953 1.00795 0.91602 0.92288 0.93532 0.87974 0.91723 0.89846 0.90861 0.90845 0.84389 0.86822 0.86044 0.85923 0.91937 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.45 37.16 0.35 -1.39 16 2 C -0.11 -1.34 5.32 -27.88 -0.15 -1.49 16 3 C -0.02 -0.23 5.36 -101.14 -0.54 -0.77 16 4 C -0.12 -0.89 10.05 36.00 0.36 -0.53 16 5 C -0.20 -2.59 9.75 -37.85 -0.37 -2.96 16 6 C 0.48 8.38 7.61 34.25 0.26 8.65 16 7 O -0.48 -9.48 11.13 -19.30 -0.21 -9.69 16 8 O -0.30 -5.60 10.04 -25.02 -0.25 -5.85 16 9 C 0.12 2.59 5.18 -39.23 -0.20 2.39 16 10 C -0.21 -4.01 9.99 -39.38 -0.39 -4.40 16 11 C -0.07 -1.20 10.03 -39.63 -0.40 -1.60 16 12 C -0.19 -4.04 9.99 -39.37 -0.39 -4.44 16 13 C 0.16 4.12 6.65 -39.13 -0.26 3.86 16 14 O -0.17 -5.00 9.76 0.03 0.00 -5.00 16 15 C -0.39 -11.29 9.49 30.88 0.29 -11.00 16 16 H 0.09 2.47 5.20 -52.48 -0.27 2.19 16 17 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 18 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 19 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 C -0.23 -5.46 8.61 -39.25 -0.34 -5.79 16 24 H 0.06 1.05 6.88 -51.93 -0.36 0.69 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.10 1.52 5.60 -51.93 -0.29 1.23 16 28 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 31 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 32 H 0.14 1.40 8.04 -52.48 -0.42 0.98 16 33 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 35 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 36 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 37 H 0.13 3.22 5.64 -52.48 -0.30 2.92 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -32.44 320.87 -6.34 -38.78 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.57 Total: 4.02 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -1.87 Total: -18.40 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.76 Total: -24.73 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.47 Total: -20.54 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.44 -6.34 -38.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.830 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds