Wall clock time and date at job start Mon Mar 30 2020 01:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47005 * 2 1 4 4 C 1.50699 * 120.00152 * 87.71803 * 3 2 1 5 5 C 1.33097 * 119.99773 * 267.71805 * 3 2 1 6 6 C 1.46938 * 120.00157 * 7.86107 * 5 3 2 7 7 O 1.21543 * 119.99797 * 6.13351 * 6 5 3 8 8 O 1.34810 * 119.99677 * 186.13147 * 6 5 3 9 9 C 1.35912 * 116.99700 * 175.01519 * 8 6 5 10 10 C 1.38838 * 120.02192 * 255.36292 * 9 8 6 11 11 C 1.38180 * 120.07933 * 179.72194 * 10 9 8 12 12 C 1.38157 * 120.12628 * 0.23079 * 11 10 9 13 13 C 1.38898 * 120.04005 * 0.02562 * 12 11 10 14 14 O 1.35756 * 120.03465 * 180.02562 * 13 12 11 15 15 C 1.34832 * 116.99672 * 174.38684 * 14 13 12 16 16 H 1.08003 * 120.00169 * 5.06413 * 15 14 13 17 17 C 1.38651 * 120.00029 * 185.06377 * 15 14 13 18 18 N 1.31556 * 119.99976 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99867 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47408 * 89.99883 * 19 17 15 21 21 H 1.48509 * 109.47066 * 209.99888 * 19 17 15 22 22 H 1.48497 * 109.47597 * 329.99855 * 19 17 15 23 23 C 1.38577 * 120.02104 * 75.57086 * 9 8 6 24 24 H 1.08998 * 109.47244 * 60.00486 * 1 2 3 25 25 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47151 * 299.99575 * 1 2 3 27 27 H 1.09006 * 109.46565 * 239.99881 * 2 1 3 28 28 H 1.08990 * 109.47036 * 120.00116 * 2 1 3 29 29 H 1.08997 * 109.47089 * 269.99842 * 4 3 2 30 30 H 1.08994 * 109.46768 * 29.99872 * 4 3 2 31 31 H 1.09003 * 109.46778 * 149.99819 * 4 3 2 32 32 H 1.08006 * 119.99859 * 187.86250 * 5 3 2 33 33 H 1.08000 * 119.95703 * 0.02562 * 10 9 8 34 34 H 1.08007 * 119.93808 * 180.25525 * 11 10 9 35 35 H 1.07999 * 119.98194 * 180.02562 * 12 11 10 36 36 H 0.96997 * 120.00048 * 180.02562 * 18 17 15 37 37 H 1.08005 * 120.06790 * 0.02934 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2345 2.1486 1.3040 5 6 2.2974 2.0329 -1.1518 6 6 1.9396 1.3911 -2.4242 7 8 1.3029 0.3558 -2.4247 8 8 2.3174 1.9508 -3.5910 9 6 2.0455 1.2542 -4.7260 10 6 3.0645 0.5875 -5.3928 11 6 2.7883 -0.1257 -6.5436 12 6 1.4987 -0.1738 -7.0370 13 6 0.4763 0.4957 -6.3769 14 8 -0.7909 0.4479 -6.8614 15 6 -1.7546 1.0204 -6.1122 16 1 -1.4916 1.5599 -5.2142 17 6 -3.0834 0.9168 -6.4945 18 7 -3.4037 0.2602 -7.5886 19 14 -4.4184 1.7107 -5.4569 20 1 -4.6499 3.1003 -5.9267 21 1 -5.6749 0.9292 -5.5845 22 1 -3.9921 1.7337 -4.0347 23 6 0.7517 1.2126 -5.2207 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3151 2.6663 1.5775 30 1 2.4937 1.4321 2.0835 31 1 3.0410 2.8736 1.1942 32 1 2.7756 3.0013 -1.1511 33 1 4.0733 0.6224 -5.0089 34 1 3.5821 -0.6469 -7.0583 35 1 1.2855 -0.7323 -7.9364 36 1 -4.3332 0.1880 -7.8563 37 1 -0.0417 1.7338 -4.7055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:29 Heat of formation + Delta-G solvation = -82.527587 kcal Electronic energy + Delta-G solvation = -20954.828112 eV Core-core repulsion = 17663.223922 eV Total energy + Delta-G solvation = -3291.604190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.28305 -40.64061 -39.11888 -37.57232 -36.63082 -34.36760 -32.17290 -31.37682 -30.67973 -29.21944 -27.47185 -25.36760 -24.24006 -23.43485 -22.32329 -20.14000 -19.83069 -19.52783 -18.31346 -17.53114 -17.15913 -16.89108 -16.15948 -16.09762 -15.77248 -15.57949 -15.28174 -14.74320 -14.67048 -14.35708 -13.91556 -13.79631 -13.74206 -13.26139 -13.17268 -13.04279 -12.89055 -12.76831 -12.56867 -12.23108 -12.17936 -12.02542 -11.75140 -11.55237 -11.01005 -10.87292 -10.25516 -9.81185 -9.17892 -8.55503 -6.24795 0.02284 0.18194 0.52823 1.27607 1.36757 1.45204 1.80644 1.87133 2.10984 2.71954 3.03856 3.36195 3.63966 3.70014 3.97439 4.08093 4.17329 4.29988 4.32152 4.40813 4.51451 4.57633 4.61897 4.70966 4.81789 4.90003 4.96525 4.99365 5.07046 5.15892 5.25837 5.34008 5.38613 5.43265 5.49541 5.54091 5.66736 5.91808 6.01021 6.81832 6.88364 7.63330 8.66929 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.005772 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.518391 B = 4850.030774 C = 6324.588922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C 0.005 3.995 4 C -0.123 4.123 5 C -0.227 4.227 6 C 0.474 3.526 7 O -0.514 6.514 8 O -0.298 6.298 9 C 0.117 3.883 10 C -0.193 4.193 11 C -0.047 4.047 12 C -0.195 4.195 13 C 0.128 3.872 14 O -0.220 6.220 15 C -0.418 4.418 16 H 0.088 0.912 17 C -0.015 4.015 18 N -0.912 5.912 19 Si 1.014 2.986 20 H -0.257 1.257 21 H -0.262 1.262 22 H -0.263 1.263 23 C -0.248 4.248 24 H 0.026 0.974 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.131 0.869 36 H 0.276 0.724 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.970 3.542 17.302 21.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.153 4.153 3 C 0.004 3.996 4 C -0.179 4.179 5 C -0.245 4.245 6 C 0.324 3.676 7 O -0.403 6.403 8 O -0.214 6.214 9 C 0.075 3.925 10 C -0.212 4.212 11 C -0.064 4.064 12 C -0.214 4.214 13 C 0.077 3.923 14 O -0.127 6.127 15 C -0.494 4.494 16 H 0.106 0.894 17 C -0.213 4.213 18 N -0.549 5.549 19 Si 0.832 3.168 20 H -0.182 1.182 21 H -0.187 1.187 22 H -0.187 1.187 23 C -0.268 4.268 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.184 0.816 33 H 0.173 0.827 34 H 0.194 0.806 35 H 0.149 0.851 36 H 0.085 0.915 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.485 3.081 16.959 21.284 hybrid contribution -1.083 0.228 -0.272 1.140 sum 11.402 3.310 16.688 20.480 Atomic orbital electron populations 1.21517 0.94498 1.01938 1.01077 1.21133 0.96867 0.93443 1.03836 1.23107 0.85914 0.94881 0.95687 1.21136 1.04299 1.00846 0.91574 1.21823 1.12001 1.04220 0.86500 1.22780 0.76777 0.82878 0.85206 1.90859 1.37432 1.24664 1.87369 1.84598 1.74956 1.48198 1.13674 1.18412 0.92724 0.95238 0.86091 1.21095 0.99242 1.01558 0.99288 1.21072 0.95149 0.95946 0.94262 1.20703 0.92219 1.05182 1.03331 1.19703 0.86591 0.93791 0.92247 1.83953 1.12802 1.70426 1.45472 1.21665 0.85882 1.33960 1.07901 0.89417 1.26512 0.99226 0.97325 0.98248 1.70151 1.19878 1.40684 1.24235 0.84677 0.76061 0.78465 0.77556 1.18153 1.18653 1.18691 1.21164 0.97008 1.07725 1.00871 0.95436 0.92580 0.90756 0.91144 0.88499 0.88540 0.88889 0.88896 0.81595 0.82730 0.80620 0.85058 0.91476 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.45 71.98 0.68 -2.70 16 2 C -0.12 -2.63 5.32 29.85 0.16 -2.47 16 3 C 0.00 0.09 5.36 -17.60 -0.09 0.00 16 4 C -0.12 -1.18 10.05 71.24 0.72 -0.46 16 5 C -0.23 -5.36 9.75 23.40 0.23 -5.13 16 6 C 0.47 16.55 7.61 70.10 0.53 17.08 16 7 O -0.51 -21.13 11.13 19.69 0.22 -20.91 16 8 O -0.30 -11.25 10.04 -0.79 -0.01 -11.26 16 9 C 0.12 4.91 5.18 22.49 0.12 5.03 16 10 C -0.19 -6.77 9.99 22.40 0.22 -6.54 16 11 C -0.05 -1.57 10.03 22.24 0.22 -1.35 16 12 C -0.20 -8.45 9.99 22.41 0.22 -8.22 16 13 C 0.13 6.78 6.65 22.56 0.15 6.93 16 14 O -0.22 -13.83 9.76 -22.82 -0.22 -14.06 16 15 C -0.42 -25.86 9.49 67.92 0.64 -25.21 16 16 H 0.09 5.23 5.20 -2.91 -0.02 5.22 16 17 C -0.01 -0.86 5.49 84.83 0.47 -0.39 16 18 N -0.91 -56.91 13.67 21.61 0.30 -56.62 16 19 Si 1.01 44.88 29.55 68.60 2.03 46.91 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 23 C -0.25 -12.44 8.61 22.48 0.19 -12.25 16 24 H 0.03 0.89 6.88 -2.39 -0.02 0.88 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 2.10 5.60 -2.38 -0.01 2.09 16 28 H 0.10 1.57 8.06 -2.39 -0.02 1.55 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.60 8.06 -2.39 -0.02 0.58 16 31 H 0.09 0.62 8.06 -2.39 -0.02 0.60 16 32 H 0.17 2.89 8.04 -2.91 -0.02 2.87 16 33 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 34 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 35 H 0.13 5.35 8.06 -2.91 -0.02 5.33 16 36 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.11 5.75 5.64 -2.91 -0.02 5.74 16 Total: -1.00 -78.57 320.87 7.85 -70.71 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 1.08 Total: 20.91 kcal Atomic # 6 Polarization: -40.15 SS G_CDS: 4.46 Total: -35.69 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.30 Total: -56.62 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.01 Total: -46.22 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -78.57 7.85 -70.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.814 kcal (2) G-P(sol) polarization free energy of solvation -78.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds