Wall clock time and date at job start Mon Mar 30 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47494 * 2 1 4 4 C 1.50704 * 120.00007 * 274.99871 * 3 2 1 5 5 C 1.33095 * 120.00067 * 94.99748 * 3 2 1 6 6 C 1.46933 * 119.99698 * 172.50947 * 5 3 2 7 7 O 1.21547 * 120.00299 * 354.07102 * 6 5 3 8 8 O 1.34812 * 119.99696 * 174.07666 * 6 5 3 9 9 C 1.35905 * 117.00290 * 175.09289 * 8 6 5 10 10 C 1.38839 * 120.02043 * 257.53822 * 9 8 6 11 11 C 1.38192 * 120.07934 * 179.71519 * 10 9 8 12 12 C 1.38156 * 120.12164 * 0.23782 * 11 10 9 13 13 C 1.38894 * 120.04534 * 359.97438 * 12 11 10 14 14 O 1.35754 * 120.03981 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00146 * 174.33310 * 14 13 12 16 16 H 1.08005 * 119.99747 * 5.08931 * 15 14 13 17 17 C 1.38650 * 120.00194 * 185.09063 * 15 14 13 18 18 N 1.31566 * 120.00018 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46909 * 59.99538 * 19 17 15 21 21 H 1.48497 * 109.47387 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47002 * 299.99847 * 19 17 15 23 23 C 1.38582 * 120.02356 * 77.73946 * 9 8 6 24 24 H 1.09000 * 109.46772 * 60.00094 * 1 2 3 25 25 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47157 * 300.00327 * 1 2 3 27 27 H 1.09001 * 109.47157 * 239.99673 * 2 1 3 28 28 H 1.09000 * 109.46772 * 119.99906 * 2 1 3 29 29 H 1.08991 * 109.46984 * 263.49633 * 4 3 2 30 30 H 1.09001 * 109.46761 * 23.49908 * 4 3 2 31 31 H 1.08997 * 109.46942 * 143.49253 * 4 3 2 32 32 H 1.07997 * 120.00090 * 352.50250 * 5 3 2 33 33 H 1.07995 * 119.96144 * 359.97438 * 10 9 8 34 34 H 1.07992 * 119.93653 * 180.24959 * 11 10 9 35 35 H 1.08002 * 119.97454 * 180.02562 * 12 11 10 36 36 H 0.96992 * 119.99791 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.06447 * 0.02876 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1764 2.1690 -1.3002 5 6 2.3489 2.0147 1.1482 6 6 2.9919 3.3358 1.1391 7 8 3.3326 3.8387 0.0863 8 8 3.2041 3.9902 2.2985 9 6 3.8940 5.1590 2.2300 10 6 5.2321 5.1985 2.5984 11 6 5.9364 6.3851 2.5237 12 6 5.3103 7.5366 2.0870 13 6 3.9707 7.5040 1.7214 14 8 3.3557 8.6355 1.2919 15 6 2.0908 8.5115 0.8419 16 1 1.5839 7.5603 0.9107 17 6 1.4408 9.6052 0.2907 18 7 2.0581 10.7640 0.2072 19 14 -0.3119 9.4338 -0.3322 20 1 -1.1960 9.0169 0.7858 21 1 -0.7760 10.7379 -0.8698 22 1 -0.3573 8.4103 -1.4072 23 6 3.2614 6.3133 1.7965 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2084 2.1037 -1.6446 30 1 1.5154 1.7297 -2.0473 31 1 1.9093 3.2149 -1.1489 32 1 2.1331 1.5256 2.0866 33 1 5.7242 4.2998 2.9398 34 1 6.9781 6.4122 2.8069 35 1 5.8631 8.4626 2.0291 36 1 1.6032 11.5292 -0.1780 37 1 2.2196 6.2854 1.5131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:32 Heat of formation + Delta-G solvation = -68.223449 kcal Electronic energy + Delta-G solvation = -20679.112580 eV Core-core repulsion = 17388.128664 eV Total energy + Delta-G solvation = -3290.983916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78069 -38.86690 -37.59997 -36.13160 -35.53651 -32.29338 -31.25979 -29.79020 -28.94395 -27.98455 -25.43579 -24.68026 -22.93638 -21.68436 -20.73111 -18.70231 -18.27350 -17.85396 -16.81453 -15.90803 -15.73625 -15.11050 -14.98801 -14.55719 -14.30992 -14.24822 -13.72478 -13.48529 -13.35024 -13.00026 -12.82600 -12.60661 -12.36179 -11.90515 -11.78919 -11.66641 -11.43427 -11.27690 -11.19987 -11.02792 -10.82502 -10.50473 -10.24310 -9.96192 -9.51052 -9.32847 -8.85727 -8.13748 -7.33562 -6.46934 -4.06309 1.10529 1.82010 2.23751 3.04247 3.12553 3.13417 3.16736 3.25638 3.95857 4.43659 4.53129 4.63154 4.92572 4.97227 5.04692 5.13121 5.24186 5.29243 5.43449 5.57729 5.60694 5.62375 5.71664 5.80485 5.89664 5.97999 6.02329 6.18293 6.22152 6.31163 6.51395 6.59503 6.94559 7.03562 7.11673 7.16221 7.34951 7.63328 7.96904 8.25013 8.98171 9.64610 10.70602 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.005310 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.432602 B = 5272.079083 C = 6900.155759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.021 4.021 4 C -0.132 4.132 5 C -0.205 4.205 6 C 0.484 3.516 7 O -0.484 6.484 8 O -0.296 6.296 9 C 0.123 3.877 10 C -0.212 4.212 11 C -0.065 4.065 12 C -0.187 4.187 13 C 0.164 3.836 14 O -0.171 6.171 15 C -0.393 4.393 16 H 0.090 0.910 17 C 0.042 3.958 18 N -0.861 5.861 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.269 1.269 23 C -0.230 4.230 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.271 0.729 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 -18.819 0.611 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.021 4.021 4 C -0.188 4.188 5 C -0.224 4.224 6 C 0.331 3.669 7 O -0.372 6.372 8 O -0.211 6.211 9 C 0.082 3.918 10 C -0.232 4.232 11 C -0.084 4.084 12 C -0.207 4.207 13 C 0.110 3.890 14 O -0.074 6.074 15 C -0.469 4.469 16 H 0.108 0.892 17 C -0.163 4.163 18 N -0.495 5.495 19 Si 0.764 3.236 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.250 4.250 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.156 0.844 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.823 -18.143 0.184 18.162 hybrid contribution -0.907 -0.051 -0.206 0.931 sum -1.730 -18.194 -0.022 18.276 Atomic orbital electron populations 1.21746 0.93961 1.02176 1.02780 1.20772 0.96863 0.91981 1.03634 1.22689 0.89225 0.94995 0.95222 1.21241 1.02791 1.01384 0.93337 1.21672 1.07531 0.93505 0.99652 1.21776 0.77568 0.85740 0.81803 1.90887 1.47442 1.67546 1.31353 1.84578 1.67817 1.33932 1.34808 1.18196 0.90394 0.82656 1.00517 1.20536 0.92470 0.98934 1.11229 1.20483 0.98587 0.91486 0.97798 1.20325 0.92823 0.99180 1.08332 1.19113 0.91556 0.86224 0.92152 1.83996 1.28265 1.26265 1.68874 1.21271 0.86816 0.98445 1.40361 0.89246 1.25274 1.00187 0.94391 0.96410 1.70027 1.37501 1.00510 1.41479 0.85796 0.80351 0.78095 0.79338 1.19419 1.20113 1.19422 1.21202 1.01733 0.92544 1.09490 0.92172 0.91972 0.92125 0.90018 0.90348 0.89819 0.92144 0.89092 0.84374 0.86820 0.86030 0.85895 0.91873 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.67 16 2 C -0.10 -0.71 6.08 -27.89 -0.17 -0.88 16 3 C -0.02 -0.22 5.36 -101.14 -0.54 -0.77 16 4 C -0.13 -1.60 8.45 36.01 0.30 -1.30 16 5 C -0.20 -2.61 9.72 -37.85 -0.37 -2.98 16 6 C 0.48 8.52 7.64 34.25 0.26 8.78 16 7 O -0.48 -9.83 12.85 -19.30 -0.25 -10.08 16 8 O -0.30 -5.65 10.03 -25.01 -0.25 -5.90 16 9 C 0.12 2.61 5.12 -39.23 -0.20 2.41 16 10 C -0.21 -4.05 9.99 -39.38 -0.39 -4.44 16 11 C -0.07 -1.21 10.03 -39.63 -0.40 -1.60 16 12 C -0.19 -4.05 9.99 -39.37 -0.39 -4.45 16 13 C 0.16 4.14 6.64 -39.13 -0.26 3.88 16 14 O -0.17 -5.00 9.76 0.04 0.00 -5.00 16 15 C -0.39 -11.34 9.49 30.88 0.29 -11.04 16 16 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 17 C 0.04 1.18 5.49 -17.51 -0.10 1.08 16 18 N -0.86 -25.49 13.67 55.48 0.76 -24.74 16 19 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 C -0.23 -5.50 8.73 -39.25 -0.34 -5.84 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.50 8.04 -51.93 -0.42 0.09 16 29 H 0.08 1.05 8.00 -51.93 -0.42 0.64 16 30 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.09 1.39 6.23 -51.93 -0.32 1.07 16 32 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.13 3.22 5.64 -52.49 -0.30 2.92 16 LS Contribution 324.12 15.07 4.88 4.88 Total: -1.00 -32.67 324.12 -6.48 -39.15 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.66 Total: 3.48 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -1.94 Total: -17.81 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.76 Total: -24.74 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.50 Total: -20.98 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.67 -6.48 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.070 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds