Wall clock time and date at job start Mon Mar 30 2020 01:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47494 * 2 1 4 4 C 1.50704 * 120.00007 * 274.99871 * 3 2 1 5 5 C 1.33095 * 120.00067 * 94.99748 * 3 2 1 6 6 C 1.46933 * 119.99698 * 172.50947 * 5 3 2 7 7 O 1.21547 * 120.00299 * 354.07102 * 6 5 3 8 8 O 1.34812 * 119.99696 * 174.07666 * 6 5 3 9 9 C 1.35905 * 117.00290 * 175.09289 * 8 6 5 10 10 C 1.38839 * 120.02043 * 257.53822 * 9 8 6 11 11 C 1.38192 * 120.07934 * 179.71519 * 10 9 8 12 12 C 1.38156 * 120.12164 * 0.23782 * 11 10 9 13 13 C 1.38894 * 120.04534 * 359.97438 * 12 11 10 14 14 O 1.35754 * 120.03981 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00146 * 174.33310 * 14 13 12 16 16 H 1.08005 * 119.99747 * 5.08931 * 15 14 13 17 17 C 1.38650 * 120.00194 * 185.09063 * 15 14 13 18 18 N 1.31566 * 120.00018 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46909 * 59.99538 * 19 17 15 21 21 H 1.48497 * 109.47387 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47002 * 299.99847 * 19 17 15 23 23 C 1.38582 * 120.02356 * 77.73946 * 9 8 6 24 24 H 1.09000 * 109.46772 * 60.00094 * 1 2 3 25 25 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47157 * 300.00327 * 1 2 3 27 27 H 1.09001 * 109.47157 * 239.99673 * 2 1 3 28 28 H 1.09000 * 109.46772 * 119.99906 * 2 1 3 29 29 H 1.08991 * 109.46984 * 263.49633 * 4 3 2 30 30 H 1.09001 * 109.46761 * 23.49908 * 4 3 2 31 31 H 1.08997 * 109.46942 * 143.49253 * 4 3 2 32 32 H 1.07997 * 120.00090 * 352.50250 * 5 3 2 33 33 H 1.07995 * 119.96144 * 359.97438 * 10 9 8 34 34 H 1.07992 * 119.93653 * 180.24959 * 11 10 9 35 35 H 1.08002 * 119.97454 * 180.02562 * 12 11 10 36 36 H 0.96992 * 119.99791 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.06447 * 0.02876 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1764 2.1690 -1.3002 5 6 2.3489 2.0147 1.1482 6 6 2.9919 3.3358 1.1391 7 8 3.3326 3.8387 0.0863 8 8 3.2041 3.9902 2.2985 9 6 3.8940 5.1590 2.2300 10 6 5.2321 5.1985 2.5984 11 6 5.9364 6.3851 2.5237 12 6 5.3103 7.5366 2.0870 13 6 3.9707 7.5040 1.7214 14 8 3.3557 8.6355 1.2919 15 6 2.0908 8.5115 0.8419 16 1 1.5839 7.5603 0.9107 17 6 1.4408 9.6052 0.2907 18 7 2.0581 10.7640 0.2072 19 14 -0.3119 9.4338 -0.3322 20 1 -1.1960 9.0169 0.7858 21 1 -0.7760 10.7379 -0.8698 22 1 -0.3573 8.4103 -1.4072 23 6 3.2614 6.3133 1.7965 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2084 2.1037 -1.6446 30 1 1.5154 1.7297 -2.0473 31 1 1.9093 3.2149 -1.1489 32 1 2.1331 1.5256 2.0866 33 1 5.7242 4.2998 2.9398 34 1 6.9781 6.4122 2.8069 35 1 5.8631 8.4626 2.0291 36 1 1.6032 11.5292 -0.1780 37 1 2.2196 6.2854 1.5131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:31 Heat of formation + Delta-G solvation = -87.092070 kcal Electronic energy + Delta-G solvation = -20679.930785 eV Core-core repulsion = 17388.128664 eV Total energy + Delta-G solvation = -3291.802121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.27697 -40.63060 -39.04508 -37.57536 -36.88361 -34.36758 -32.11596 -31.37042 -30.68324 -29.12675 -27.47375 -25.69147 -24.15828 -23.42210 -22.23199 -20.13509 -19.77376 -19.55804 -18.31458 -17.49449 -17.19457 -16.89950 -16.12807 -15.99792 -15.80671 -15.67158 -15.30160 -14.86625 -14.70534 -14.51789 -14.13255 -13.72419 -13.67030 -13.20779 -13.07310 -13.00138 -12.83070 -12.71882 -12.55874 -12.35694 -12.21018 -11.89004 -11.78604 -11.56455 -11.24568 -10.87569 -10.29132 -9.82811 -9.18615 -8.55371 -6.24996 0.00006 0.16165 0.52341 1.27761 1.38273 1.44344 1.78804 1.84146 2.11213 2.71518 3.03419 3.35667 3.57404 3.74176 3.96514 4.04747 4.16620 4.23915 4.29439 4.38897 4.50963 4.54558 4.65759 4.72063 4.80785 4.90682 4.92944 4.98781 5.05067 5.09720 5.32949 5.36798 5.40271 5.43000 5.47357 5.51205 5.58033 5.91497 5.99439 6.78504 6.88128 7.63009 8.66794 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.005310 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.432602 B = 5272.079083 C = 6900.155759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C 0.005 3.995 4 C -0.136 4.136 5 C -0.224 4.224 6 C 0.477 3.523 7 O -0.523 6.523 8 O -0.297 6.297 9 C 0.115 3.885 10 C -0.193 4.193 11 C -0.047 4.047 12 C -0.195 4.195 13 C 0.128 3.872 14 O -0.220 6.220 15 C -0.420 4.420 16 H 0.089 0.911 17 C -0.014 4.014 18 N -0.912 5.912 19 Si 1.013 2.987 20 H -0.257 1.257 21 H -0.261 1.261 22 H -0.263 1.263 23 C -0.249 4.249 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.168 0.832 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.132 0.868 36 H 0.276 0.724 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 -22.428 1.086 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C 0.004 3.996 4 C -0.192 4.192 5 C -0.242 4.242 6 C 0.327 3.673 7 O -0.413 6.413 8 O -0.213 6.213 9 C 0.074 3.926 10 C -0.212 4.212 11 C -0.064 4.064 12 C -0.214 4.214 13 C 0.077 3.923 14 O -0.126 6.126 15 C -0.496 4.496 16 H 0.106 0.894 17 C -0.213 4.213 18 N -0.549 5.549 19 Si 0.832 3.168 20 H -0.181 1.181 21 H -0.185 1.185 22 H -0.187 1.187 23 C -0.269 4.269 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.186 0.814 33 H 0.173 0.827 34 H 0.194 0.806 35 H 0.150 0.850 36 H 0.085 0.915 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.581 -21.803 0.692 21.821 hybrid contribution -0.779 0.792 -0.307 1.153 sum -1.360 -21.010 0.385 21.058 Atomic orbital electron populations 1.21766 0.93309 1.03381 1.02260 1.20893 0.97138 0.89182 1.05571 1.23079 0.86359 0.96402 0.93766 1.21228 1.03065 0.99737 0.95138 1.21814 1.09331 0.91343 1.01730 1.22764 0.77088 0.86780 0.80719 1.90882 1.49393 1.68717 1.32274 1.84595 1.67938 1.32934 1.35827 1.18416 0.91514 0.82680 0.99992 1.21126 0.91254 1.00691 1.08131 1.21079 1.00764 0.89592 0.94983 1.20714 0.91509 1.01150 1.08022 1.19693 0.93206 0.86052 0.93333 1.83952 1.28760 1.28376 1.71511 1.21644 0.87465 0.99007 1.41495 0.89352 1.26522 1.04989 0.93649 0.96126 1.70147 1.39829 1.01517 1.43436 0.84743 0.74282 0.78762 0.79025 1.18075 1.18509 1.18743 1.21176 1.01048 0.93652 1.11022 0.92699 0.89922 0.92760 0.88164 0.88393 0.90349 0.89313 0.92741 0.81444 0.82714 0.80587 0.84991 0.91452 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.09 -1.00 6.08 29.85 0.18 -0.82 16 3 C 0.00 0.09 5.36 -17.60 -0.09 0.00 16 4 C -0.14 -3.20 8.45 71.24 0.60 -2.60 16 5 C -0.22 -5.32 9.72 23.39 0.23 -5.09 16 6 C 0.48 16.75 7.64 70.10 0.54 17.28 16 7 O -0.52 -21.83 12.85 19.68 0.25 -21.58 16 8 O -0.30 -11.24 10.03 -0.74 -0.01 -11.24 16 9 C 0.12 4.87 5.12 22.50 0.12 4.98 16 10 C -0.19 -6.80 9.99 22.40 0.22 -6.57 16 11 C -0.05 -1.57 10.03 22.24 0.22 -1.35 16 12 C -0.19 -8.43 9.99 22.41 0.22 -8.20 16 13 C 0.13 6.81 6.64 22.56 0.15 6.96 16 14 O -0.22 -13.78 9.76 -22.76 -0.22 -14.00 16 15 C -0.42 -25.93 9.49 67.92 0.64 -25.28 16 16 H 0.09 5.23 5.20 -2.91 -0.02 5.22 16 17 C -0.01 -0.84 5.49 84.83 0.47 -0.37 16 18 N -0.91 -56.83 13.67 21.61 0.30 -56.53 16 19 Si 1.01 44.65 29.55 68.60 2.03 46.68 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 23 C -0.25 -12.51 8.73 22.49 0.20 -12.31 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.10 0.79 8.04 -2.39 -0.02 0.77 16 29 H 0.08 1.95 8.00 -2.39 -0.02 1.93 16 30 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 31 H 0.05 1.73 6.23 -2.39 -0.01 1.71 16 32 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 33 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.18 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.13 5.37 8.06 -2.91 -0.02 5.35 16 36 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.11 5.79 5.64 -2.91 -0.02 5.77 16 Total: -1.00 -78.18 324.12 7.83 -70.36 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 1.07 Total: 20.57 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 4.41 Total: -34.25 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.30 Total: -56.53 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: 0.02 Total: -46.83 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -78.18 7.83 -70.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.737 kcal (2) G-P(sol) polarization free energy of solvation -78.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds