Wall clock time and date at job start Mon Mar 30 2020 01:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33088 * 120.00198 * 2 1 4 4 C 1.50704 * 119.99968 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46828 * 95.00094 * 4 3 2 6 6 C 1.46936 * 120.00182 * 0.02562 * 3 2 1 7 7 O 1.21547 * 120.00093 * 359.97438 * 6 3 2 8 8 O 1.34811 * 119.99941 * 179.72661 * 6 3 2 9 9 C 1.35910 * 117.00027 * 175.28357 * 8 6 3 10 10 C 1.38827 * 120.02718 * 255.01144 * 9 8 6 11 11 C 1.38181 * 120.08561 * 179.76410 * 10 9 8 12 12 C 1.38155 * 120.12371 * 0.51077 * 11 10 9 13 13 C 1.38902 * 120.04308 * 359.74260 * 12 11 10 14 14 O 1.35750 * 120.04470 * 179.97438 * 13 12 11 15 15 C 1.34825 * 117.00065 * 185.61984 * 14 13 12 16 16 H 1.07998 * 120.00506 * 354.93701 * 15 14 13 17 17 C 1.38653 * 119.99845 * 174.94103 * 15 14 13 18 18 N 1.31559 * 120.00355 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00208 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46994 * 59.99485 * 19 17 15 21 21 H 1.48498 * 109.47107 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46808 * 299.99978 * 19 17 15 23 23 C 1.38590 * 120.01770 * 75.28264 * 9 8 6 24 24 H 1.08999 * 109.46796 * 300.00543 * 1 2 3 25 25 H 1.09003 * 109.46689 * 60.00063 * 1 2 3 26 26 H 1.08991 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99678 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47308 * 215.00000 * 4 3 2 29 29 H 1.08998 * 109.47334 * 335.00227 * 4 3 2 30 30 H 1.08998 * 109.47054 * 59.99962 * 5 4 3 31 31 H 1.09001 * 109.46842 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47251 * 299.99777 * 5 4 3 33 33 H 1.08004 * 119.95463 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.94315 * 180.23273 * 11 10 9 35 35 H 1.07997 * 119.98064 * 179.71731 * 12 11 10 36 36 H 0.96991 * 120.00672 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.06616 * 359.96039 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1526 0.0000 4 6 3.6796 1.1525 0.0006 5 6 4.1901 1.2779 -1.4363 6 6 1.4379 2.4251 0.0006 7 8 0.2225 2.4252 0.0006 8 8 2.1121 3.5925 0.0061 9 6 1.3759 4.7307 -0.0932 10 6 1.3468 5.4372 -1.2879 11 6 0.5948 6.5918 -1.3917 12 6 -0.1219 7.0525 -0.3043 13 6 -0.0925 6.3527 0.8952 14 8 -0.7963 6.8056 1.9639 15 6 -0.6328 6.1464 3.1285 16 1 -0.0299 5.2509 3.1622 17 6 -1.2387 6.6180 4.2831 18 7 -1.9727 7.7090 4.2423 19 14 -1.0127 5.7042 5.8967 20 1 0.4309 5.6588 6.2419 21 1 -1.7566 6.4077 6.9723 22 1 -1.5324 4.3200 5.7585 23 6 0.6581 5.1897 0.9998 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.0470 -0.9354 0.0004 28 1 4.0427 1.9944 0.5900 29 1 4.0427 0.2212 0.4352 30 1 3.8269 2.2092 -1.8709 31 1 5.2801 1.2783 -1.4359 32 1 3.8270 0.4360 -2.0257 33 1 1.9093 5.0816 -2.1385 34 1 0.5709 7.1376 -2.3234 35 1 -0.7052 7.9577 -0.3866 36 1 -2.3963 8.0391 5.0500 37 1 0.6824 4.6435 1.9312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:16 Heat of formation + Delta-G solvation = -68.263062 kcal Electronic energy + Delta-G solvation = -21014.321643 eV Core-core repulsion = 17723.336010 eV Total energy + Delta-G solvation = -3290.985634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86313 -38.88513 -37.44719 -35.80583 -35.57490 -32.30353 -31.97184 -29.76926 -28.92884 -27.47419 -25.43664 -24.06674 -22.72794 -21.80729 -21.23008 -19.42998 -18.24915 -17.66990 -16.41149 -15.97230 -15.59920 -15.11835 -14.78813 -14.41033 -14.35372 -14.15588 -13.61348 -13.39210 -13.27458 -12.98156 -12.95829 -12.51574 -12.30386 -12.26894 -11.84934 -11.48292 -11.32169 -11.26541 -11.04669 -11.01953 -10.81517 -10.51001 -10.26047 -9.96362 -9.51229 -9.26606 -8.86513 -8.14323 -7.34214 -6.47591 -4.06971 1.13675 1.81362 2.22834 2.98748 3.12225 3.12753 3.16420 3.22916 3.95199 4.46822 4.57502 4.76593 4.99780 5.04770 5.15614 5.23682 5.25713 5.34312 5.53449 5.60631 5.75352 5.78525 5.80492 5.88443 5.94326 6.01519 6.12912 6.17491 6.23742 6.30698 6.50703 6.59232 6.92604 7.02230 7.10479 7.15354 7.34114 7.61804 7.96118 8.21628 8.97424 9.63907 10.69877 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.005389 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.484086 B = 5194.532064 C = 6236.699727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 C -0.164 4.164 4 C -0.081 4.081 5 C -0.147 4.147 6 C 0.489 3.511 7 O -0.482 6.482 8 O -0.292 6.292 9 C 0.122 3.878 10 C -0.212 4.212 11 C -0.065 4.065 12 C -0.188 4.188 13 C 0.163 3.837 14 O -0.171 6.171 15 C -0.393 4.393 16 H 0.090 0.910 17 C 0.042 3.958 18 N -0.860 5.860 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.269 1.269 23 C -0.229 4.229 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.271 0.729 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.448 -13.076 -8.575 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.078 4.078 3 C -0.165 4.165 4 C -0.118 4.118 5 C -0.204 4.204 6 C 0.336 3.664 7 O -0.369 6.369 8 O -0.207 6.207 9 C 0.082 3.918 10 C -0.231 4.231 11 C -0.084 4.084 12 C -0.207 4.207 13 C 0.109 3.891 14 O -0.073 6.073 15 C -0.469 4.469 16 H 0.107 0.893 17 C -0.163 4.163 18 N -0.495 5.495 19 Si 0.764 3.236 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.249 4.249 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.151 0.849 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.754 -12.714 -8.346 17.548 hybrid contribution 0.119 -0.458 0.879 0.999 sum 8.873 -13.173 -7.466 17.550 Atomic orbital electron populations 1.21155 0.91506 1.01533 1.04539 1.23761 0.97369 0.96471 0.90232 1.20797 0.96573 0.89761 1.09397 1.20482 0.89702 1.03248 0.98366 1.21746 1.00760 1.02230 0.95687 1.21646 0.86428 0.84529 0.73826 1.90906 1.14610 1.87429 1.43947 1.84583 1.39524 1.13302 1.83310 1.18206 0.94845 0.84924 0.93867 1.20493 1.06692 0.99942 0.96008 1.20478 0.95366 0.95134 0.97381 1.20322 1.06132 1.02294 0.91934 1.19128 0.89659 0.91118 0.89189 1.83993 1.55800 1.51859 1.15698 1.21267 1.33335 1.09038 0.83263 0.89251 1.25276 0.95828 0.96362 0.98798 1.70021 1.29360 1.20534 1.29562 0.85793 0.78899 0.79116 0.79749 1.19408 1.20110 1.19435 1.21207 1.03663 1.00465 0.99576 0.89622 0.89865 0.92491 0.84900 0.90039 0.90858 0.92184 0.92251 0.92872 0.86847 0.86034 0.85910 0.91860 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.45 36.01 0.30 -1.25 16 2 C -0.06 -0.63 9.95 -36.10 -0.36 -0.99 16 3 C -0.16 -2.09 5.25 -102.89 -0.54 -2.63 16 4 C -0.08 -0.82 5.86 -27.88 -0.16 -0.98 16 5 C -0.15 -1.35 9.90 37.16 0.37 -0.98 16 6 C 0.49 8.52 7.71 34.25 0.26 8.78 16 7 O -0.48 -9.68 12.54 -19.30 -0.24 -9.93 16 8 O -0.29 -5.44 9.38 -25.02 -0.23 -5.67 16 9 C 0.12 2.56 5.19 -39.23 -0.20 2.36 16 10 C -0.21 -3.98 9.98 -39.38 -0.39 -4.37 16 11 C -0.07 -1.19 10.03 -39.63 -0.40 -1.59 16 12 C -0.19 -4.03 9.99 -39.37 -0.39 -4.43 16 13 C 0.16 4.11 6.65 -39.13 -0.26 3.85 16 14 O -0.17 -4.97 9.76 0.06 0.00 -4.97 16 15 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 16 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 17 C 0.04 1.18 5.49 -17.51 -0.10 1.08 16 18 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 19 Si 0.94 20.96 29.55 -169.99 -5.02 15.93 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 23 C -0.23 -5.45 8.59 -39.24 -0.34 -5.78 16 24 H 0.09 1.21 7.22 -51.93 -0.37 0.84 16 25 H 0.08 1.11 7.22 -51.93 -0.38 0.74 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.13 0.95 8.02 -52.49 -0.42 0.53 16 28 H 0.08 0.91 7.83 -51.93 -0.41 0.51 16 29 H 0.07 0.58 8.01 -51.93 -0.42 0.16 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 34 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.13 3.21 5.64 -52.49 -0.30 2.91 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -32.37 322.94 -6.45 -38.82 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.66 Total: 3.57 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -1.91 Total: -17.96 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.76 Total: -24.66 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.48 Total: -20.57 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.37 -6.45 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.448 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds