Wall clock time and date at job start Mon Mar 30 2020 01:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33088 * 120.00198 * 2 1 4 4 C 1.50704 * 119.99968 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46828 * 95.00094 * 4 3 2 6 6 C 1.46936 * 120.00182 * 0.02562 * 3 2 1 7 7 O 1.21547 * 120.00093 * 359.97438 * 6 3 2 8 8 O 1.34811 * 119.99941 * 179.72661 * 6 3 2 9 9 C 1.35910 * 117.00027 * 175.28357 * 8 6 3 10 10 C 1.38827 * 120.02718 * 255.01144 * 9 8 6 11 11 C 1.38181 * 120.08561 * 179.76410 * 10 9 8 12 12 C 1.38155 * 120.12371 * 0.51077 * 11 10 9 13 13 C 1.38902 * 120.04308 * 359.74260 * 12 11 10 14 14 O 1.35750 * 120.04470 * 179.97438 * 13 12 11 15 15 C 1.34825 * 117.00065 * 185.61984 * 14 13 12 16 16 H 1.07998 * 120.00506 * 354.93701 * 15 14 13 17 17 C 1.38653 * 119.99845 * 174.94103 * 15 14 13 18 18 N 1.31559 * 120.00355 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00208 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46994 * 59.99485 * 19 17 15 21 21 H 1.48498 * 109.47107 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46808 * 299.99978 * 19 17 15 23 23 C 1.38590 * 120.01770 * 75.28264 * 9 8 6 24 24 H 1.08999 * 109.46796 * 300.00543 * 1 2 3 25 25 H 1.09003 * 109.46689 * 60.00063 * 1 2 3 26 26 H 1.08991 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99678 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47308 * 215.00000 * 4 3 2 29 29 H 1.08998 * 109.47334 * 335.00227 * 4 3 2 30 30 H 1.08998 * 109.47054 * 59.99962 * 5 4 3 31 31 H 1.09001 * 109.46842 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47251 * 299.99777 * 5 4 3 33 33 H 1.08004 * 119.95463 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.94315 * 180.23273 * 11 10 9 35 35 H 1.07997 * 119.98064 * 179.71731 * 12 11 10 36 36 H 0.96991 * 120.00672 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.06616 * 359.96039 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1526 0.0000 4 6 3.6796 1.1525 0.0006 5 6 4.1901 1.2779 -1.4363 6 6 1.4379 2.4251 0.0006 7 8 0.2225 2.4252 0.0006 8 8 2.1121 3.5925 0.0061 9 6 1.3759 4.7307 -0.0932 10 6 1.3468 5.4372 -1.2879 11 6 0.5948 6.5918 -1.3917 12 6 -0.1219 7.0525 -0.3043 13 6 -0.0925 6.3527 0.8952 14 8 -0.7963 6.8056 1.9639 15 6 -0.6328 6.1464 3.1285 16 1 -0.0299 5.2509 3.1622 17 6 -1.2387 6.6180 4.2831 18 7 -1.9727 7.7090 4.2423 19 14 -1.0127 5.7042 5.8967 20 1 0.4309 5.6588 6.2419 21 1 -1.7566 6.4077 6.9723 22 1 -1.5324 4.3200 5.7585 23 6 0.6581 5.1897 0.9998 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.0470 -0.9354 0.0004 28 1 4.0427 1.9944 0.5900 29 1 4.0427 0.2212 0.4352 30 1 3.8269 2.2092 -1.8709 31 1 5.2801 1.2783 -1.4359 32 1 3.8270 0.4360 -2.0257 33 1 1.9093 5.0816 -2.1385 34 1 0.5709 7.1376 -2.3234 35 1 -0.7052 7.9577 -0.3866 36 1 -2.3963 8.0391 5.0500 37 1 0.6824 4.6435 1.9312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:15 Heat of formation + Delta-G solvation = -87.025490 kcal Electronic energy + Delta-G solvation = -21015.135243 eV Core-core repulsion = 17723.336010 eV Total energy + Delta-G solvation = -3291.799234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.33109 -40.64857 -38.97318 -37.43576 -36.70276 -34.36919 -32.83355 -31.43949 -30.68358 -28.49572 -27.46568 -25.42185 -23.56679 -23.47474 -22.80102 -20.75158 -20.13143 -19.39696 -17.97197 -17.49665 -16.93603 -16.88318 -16.10855 -16.00452 -15.72870 -15.57171 -15.32002 -14.77593 -14.66787 -14.31763 -14.09416 -13.79368 -13.69175 -13.36141 -13.13093 -13.03273 -12.99841 -12.77616 -12.53625 -12.21193 -12.09292 -11.88807 -11.78287 -11.59237 -11.18789 -10.87501 -10.20581 -9.82471 -9.18687 -8.55352 -6.25050 0.03069 0.18185 0.51957 1.28115 1.38517 1.44707 1.75371 1.83248 2.11182 2.71132 3.03001 3.35079 3.58854 3.72298 3.96455 4.14410 4.22831 4.28113 4.31539 4.49692 4.52364 4.53396 4.71629 4.74211 4.78559 4.90134 4.98565 5.02889 5.13397 5.15060 5.30391 5.37580 5.42388 5.43017 5.48876 5.53456 5.59865 5.91344 5.98667 6.75952 6.87995 7.62898 8.66743 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.005389 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.484086 B = 5194.532064 C = 6236.699727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.028 4.028 3 C -0.187 4.187 4 C -0.076 4.076 5 C -0.145 4.145 6 C 0.480 3.520 7 O -0.520 6.520 8 O -0.292 6.292 9 C 0.115 3.885 10 C -0.193 4.193 11 C -0.047 4.047 12 C -0.195 4.195 13 C 0.127 3.873 14 O -0.220 6.220 15 C -0.420 4.420 16 H 0.089 0.911 17 C -0.014 4.014 18 N -0.912 5.912 19 Si 1.014 2.986 20 H -0.257 1.257 21 H -0.262 1.262 22 H -0.262 1.262 23 C -0.248 4.248 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.185 0.815 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.154 0.846 34 H 0.177 0.823 35 H 0.132 0.868 36 H 0.276 0.724 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.584 -15.688 -10.248 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 C -0.188 4.188 4 C -0.113 4.113 5 C -0.202 4.202 6 C 0.330 3.670 7 O -0.410 6.410 8 O -0.207 6.207 9 C 0.074 3.926 10 C -0.211 4.211 11 C -0.064 4.064 12 C -0.214 4.214 13 C 0.076 3.924 14 O -0.126 6.126 15 C -0.496 4.496 16 H 0.106 0.894 17 C -0.213 4.213 18 N -0.549 5.549 19 Si 0.833 3.167 20 H -0.181 1.181 21 H -0.185 1.185 22 H -0.187 1.187 23 C -0.268 4.268 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.202 0.798 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.172 0.828 34 H 0.194 0.806 35 H 0.150 0.850 36 H 0.086 0.914 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.930 -15.342 -10.070 21.360 hybrid contribution -0.457 0.231 1.079 1.195 sum 10.473 -15.110 -8.991 20.466 Atomic orbital electron populations 1.21157 0.92884 1.02947 1.02215 1.24220 0.96557 0.97568 0.86228 1.20987 0.97951 0.87712 1.12163 1.20523 0.87582 1.04232 0.98981 1.21750 1.01728 1.01710 0.95049 1.22707 0.86490 0.85221 0.72619 1.90899 1.16309 1.87706 1.46090 1.84607 1.39288 1.13267 1.83561 1.18426 0.94264 0.86090 0.93817 1.21076 1.05166 0.98947 0.95956 1.21072 0.92755 0.94534 0.98070 1.20703 1.06623 1.02503 0.91571 1.19719 0.90607 0.92415 0.89658 1.83950 1.58455 1.53489 1.16706 1.21639 1.34245 1.09588 0.84132 0.89355 1.26531 0.95063 0.97279 1.02438 1.70143 1.31198 1.22653 1.30917 0.84732 0.79552 0.77825 0.74622 1.18125 1.18550 1.18665 1.21164 1.05161 1.00454 0.99983 0.92586 0.91761 0.89075 0.79840 0.91792 0.87590 0.94293 0.90703 0.91472 0.82814 0.80618 0.85034 0.91450 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.45 71.24 0.60 -2.42 16 2 C -0.03 -0.50 9.95 24.53 0.24 -0.25 16 3 C -0.19 -4.41 5.25 -18.74 -0.10 -4.51 16 4 C -0.08 -1.33 5.86 29.85 0.17 -1.16 16 5 C -0.15 -2.23 9.90 71.98 0.71 -1.51 16 6 C 0.48 16.79 7.71 70.10 0.54 17.33 16 7 O -0.52 -21.63 12.54 19.68 0.25 -21.38 16 8 O -0.29 -10.90 9.38 -0.79 -0.01 -10.91 16 9 C 0.12 4.84 5.19 22.49 0.12 4.96 16 10 C -0.19 -6.74 9.98 22.40 0.22 -6.51 16 11 C -0.05 -1.57 10.03 22.24 0.22 -1.35 16 12 C -0.19 -8.42 9.99 22.41 0.22 -8.19 16 13 C 0.13 6.74 6.65 22.56 0.15 6.89 16 14 O -0.22 -13.78 9.76 -22.69 -0.22 -14.00 16 15 C -0.42 -25.87 9.49 67.92 0.64 -25.23 16 16 H 0.09 5.22 5.20 -2.91 -0.02 5.20 16 17 C -0.01 -0.85 5.49 84.83 0.47 -0.38 16 18 N -0.91 -56.73 13.67 21.61 0.30 -56.43 16 19 Si 1.01 44.51 29.55 68.60 2.03 46.54 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 C -0.25 -12.41 8.59 22.49 0.19 -12.21 16 24 H 0.06 1.62 7.22 -2.39 -0.02 1.60 16 25 H 0.06 1.70 7.22 -2.39 -0.02 1.68 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.18 1.49 8.02 -2.91 -0.02 1.47 16 28 H 0.06 1.34 7.83 -2.39 -0.02 1.32 16 29 H 0.11 1.18 8.01 -2.39 -0.02 1.16 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 34 H 0.18 4.09 8.06 -2.91 -0.02 4.06 16 35 H 0.13 5.35 8.06 -2.91 -0.02 5.33 16 36 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.11 5.73 5.64 -2.91 -0.02 5.72 16 Total: -1.00 -78.46 322.94 7.83 -70.62 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 1.07 Total: 20.11 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 4.42 Total: -34.55 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.30 Total: -56.43 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: 0.02 Total: -46.29 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -78.46 7.83 -70.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.402 kcal (2) G-P(sol) polarization free energy of solvation -78.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds