Wall clock time and date at job start Mon Mar 30 2020 01:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33092 * 120.00093 * 2 1 4 4 C 1.50699 * 120.00130 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.46859 * 95.00075 * 4 3 2 6 6 C 1.46935 * 120.00081 * 180.02562 * 3 2 1 7 7 O 1.21554 * 120.00131 * 359.97438 * 6 3 2 8 8 O 1.34811 * 120.00455 * 179.97438 * 6 3 2 9 9 C 1.35901 * 117.00604 * 175.00993 * 8 6 3 10 10 C 1.38836 * 120.02523 * 255.02060 * 9 8 6 11 11 C 1.38185 * 120.07792 * 179.73767 * 10 9 8 12 12 C 1.38150 * 120.12717 * 0.51243 * 11 10 9 13 13 C 1.38895 * 120.04486 * 359.76510 * 12 11 10 14 14 O 1.35750 * 120.04344 * 179.97438 * 13 12 11 15 15 C 1.34834 * 117.00136 * 185.61760 * 14 13 12 16 16 H 1.08004 * 119.99865 * 354.92682 * 15 14 13 17 17 C 1.38650 * 119.99795 * 174.93538 * 15 14 13 18 18 N 1.31561 * 119.99356 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00236 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47117 * 89.99821 * 19 17 15 21 21 H 1.48503 * 109.46687 * 209.99927 * 19 17 15 22 22 H 1.48502 * 109.47048 * 329.99726 * 19 17 15 23 23 C 1.38588 * 120.02088 * 75.29017 * 9 8 6 24 24 H 1.08995 * 109.47270 * 179.72396 * 1 2 3 25 25 H 1.09002 * 109.46855 * 299.72334 * 1 2 3 26 26 H 1.08995 * 109.46900 * 59.72094 * 1 2 3 27 27 H 1.08009 * 120.00007 * 180.28033 * 2 1 3 28 28 H 1.09004 * 109.47215 * 215.00118 * 4 3 2 29 29 H 1.08998 * 109.47076 * 335.00322 * 4 3 2 30 30 H 1.08997 * 109.47062 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.47243 * 300.00026 * 5 4 3 32 32 H 1.09003 * 109.47538 * 60.00247 * 5 4 3 33 33 H 1.08004 * 119.95779 * 359.97438 * 10 9 8 34 34 H 1.08007 * 119.93424 * 180.22859 * 11 10 9 35 35 H 1.08005 * 119.98121 * 179.73866 * 12 11 10 36 36 H 0.97008 * 119.99557 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.05623 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1526 0.0000 4 6 1.4190 2.4577 -0.0006 5 6 1.2724 2.9625 1.4363 6 6 3.6418 1.1526 -0.0006 7 8 4.2496 0.0999 -0.0006 8 8 4.3160 2.3200 -0.0011 9 6 5.6692 2.2513 0.1037 10 6 6.2906 2.5769 1.3018 11 6 7.6661 2.5021 1.4112 12 6 8.4279 2.1135 0.3262 13 6 7.8120 1.7921 -0.8766 14 8 8.5607 1.4108 -1.9428 15 6 7.9129 1.2257 -3.1108 16 1 6.8361 1.3007 -3.1489 17 6 8.6291 0.9388 -4.2628 18 7 7.9969 0.7577 -5.4023 19 14 10.4914 0.8094 -4.1970 20 1 10.8801 -0.5935 -3.9038 21 1 11.0625 1.2182 -5.5054 22 1 11.0121 1.7007 -3.1294 23 6 6.4302 1.8614 -0.9869 24 1 -0.3633 -1.0276 -0.0050 25 1 -0.3633 0.5095 0.8925 26 1 -0.3633 0.5181 -0.8874 27 1 2.0470 -0.9354 -0.0046 28 1 1.9666 3.1932 -0.5900 29 1 0.4309 2.3066 -0.4352 30 1 0.7271 3.9063 1.4359 31 1 0.7248 2.2271 2.0257 32 1 2.2605 3.1137 1.8710 33 1 5.6980 2.8853 2.1504 34 1 8.1468 2.7524 2.3454 35 1 9.5031 2.0599 0.4131 36 1 8.4980 0.5573 -6.2084 37 1 5.9488 1.6115 -1.9209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841343951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:18 Heat of formation + Delta-G solvation = -69.279518 kcal Electronic energy + Delta-G solvation = -20821.294990 eV Core-core repulsion = 17530.265279 eV Total energy + Delta-G solvation = -3291.029711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86233 -39.00794 -37.47722 -36.18629 -35.75912 -32.40621 -31.51863 -29.89506 -29.21053 -28.04314 -25.36076 -23.79237 -23.35296 -21.68248 -21.05639 -18.78315 -18.10364 -17.86367 -17.08187 -16.25721 -15.90739 -15.30483 -14.77799 -14.49374 -14.06389 -13.92171 -13.83874 -13.63263 -13.33435 -13.21521 -12.73293 -12.56080 -12.43743 -12.26637 -12.23562 -11.66022 -11.38884 -11.18514 -11.11735 -11.02424 -10.79062 -10.41592 -10.30598 -10.19644 -9.52532 -9.27584 -8.90673 -8.23441 -7.49969 -6.44021 -4.11668 1.10046 1.71420 2.11496 2.99526 3.14121 3.21826 3.25153 3.38620 4.21583 4.37479 4.62766 4.70647 4.80417 4.92773 5.00178 5.07376 5.21318 5.30979 5.35042 5.48676 5.50684 5.64728 5.71404 5.81446 5.83516 5.89031 6.08181 6.09780 6.19177 6.26549 6.38022 6.47118 6.84640 6.95699 7.02790 7.07795 7.44360 7.72925 7.97003 8.17316 8.90045 9.48821 10.63398 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.004649 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.952572 B = 6020.856694 C = 6944.132494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C -0.158 4.158 4 C -0.085 4.085 5 C -0.146 4.146 6 C 0.495 3.505 7 O -0.488 6.488 8 O -0.289 6.289 9 C 0.121 3.879 10 C -0.204 4.204 11 C -0.067 4.067 12 C -0.187 4.187 13 C 0.170 3.830 14 O -0.210 6.210 15 C -0.392 4.392 16 H 0.105 0.895 17 C 0.065 3.935 18 N -0.876 5.876 19 Si 0.907 3.093 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.258 1.258 23 C -0.218 4.218 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.280 0.720 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.786 2.810 12.254 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.084 4.084 3 C -0.159 4.159 4 C -0.123 4.123 5 C -0.203 4.203 6 C 0.341 3.659 7 O -0.375 6.375 8 O -0.204 6.204 9 C 0.080 3.920 10 C -0.223 4.223 11 C -0.085 4.085 12 C -0.206 4.206 13 C 0.117 3.883 14 O -0.115 6.115 15 C -0.467 4.467 16 H 0.123 0.877 17 C -0.139 4.139 18 N -0.514 5.514 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.182 1.182 23 C -0.237 4.237 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.318 2.394 11.948 17.327 hybrid contribution 0.769 -0.201 -0.320 0.857 sum -11.549 2.193 11.628 16.535 Atomic orbital electron populations 1.21007 0.91389 1.03283 1.02949 1.23714 0.96714 0.97610 0.90371 1.20720 0.88862 0.97418 1.08942 1.20543 0.99667 0.93618 0.98432 1.21700 1.02282 1.00654 0.95656 1.21630 0.89108 0.81872 0.73299 1.90910 1.70061 1.32185 1.44341 1.84585 1.18874 1.33760 1.83229 1.18229 0.79197 1.00800 0.93803 1.20569 0.95044 1.10724 0.95964 1.20483 0.92549 0.98015 0.97446 1.20321 0.99971 1.08491 0.91864 1.18848 0.89156 0.91971 0.88303 1.83585 1.36155 1.74925 1.16827 1.20771 0.93969 1.49576 0.82379 0.87748 1.24475 1.00454 0.95515 0.93415 1.69655 1.36975 1.45527 0.99193 0.86160 0.83234 0.79462 0.77931 1.19779 1.20695 1.18241 1.21342 0.94160 1.08341 0.99882 0.91124 0.90418 0.90228 0.85276 0.90039 0.90475 0.92187 0.92880 0.92199 0.86571 0.85809 0.85873 0.90954 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 8.85 36.01 0.32 -0.61 16 2 C -0.07 -0.73 9.84 -36.10 -0.36 -1.09 16 3 C -0.16 -2.09 5.25 -102.89 -0.54 -2.63 16 4 C -0.09 -0.89 5.47 -27.88 -0.15 -1.04 16 5 C -0.15 -1.33 9.89 37.16 0.37 -0.96 16 6 C 0.50 8.97 7.74 34.25 0.27 9.23 16 7 O -0.49 -10.51 15.69 -19.31 -0.30 -10.81 16 8 O -0.29 -5.46 9.38 -24.99 -0.23 -5.69 16 9 C 0.12 2.51 5.19 -39.23 -0.20 2.31 16 10 C -0.20 -3.70 9.99 -39.38 -0.39 -4.10 16 11 C -0.07 -1.15 10.03 -39.63 -0.40 -1.55 16 12 C -0.19 -3.77 9.99 -39.37 -0.39 -4.16 16 13 C 0.17 4.10 6.65 -39.13 -0.26 3.84 16 14 O -0.21 -5.70 8.58 0.04 0.00 -5.70 16 15 C -0.39 -11.40 9.95 30.88 0.31 -11.09 16 16 H 0.11 3.16 5.44 -52.48 -0.29 2.88 16 17 C 0.07 1.86 5.49 -17.52 -0.10 1.77 16 18 N -0.88 -25.72 13.96 55.48 0.77 -24.95 16 19 Si 0.91 21.88 28.62 -169.99 -4.86 17.02 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.22 -5.18 8.59 -39.24 -0.34 -5.51 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.47 7.83 -51.93 -0.41 0.06 16 26 H 0.08 0.52 7.40 -51.93 -0.38 0.13 16 27 H 0.13 1.57 7.49 -52.48 -0.39 1.18 16 28 H 0.08 0.94 7.83 -51.93 -0.41 0.53 16 29 H 0.08 0.62 6.31 -51.93 -0.33 0.30 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.42 7.87 -51.93 -0.41 0.02 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 36 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.14 3.53 5.64 -52.49 -0.30 3.23 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -32.44 323.20 -6.21 -38.65 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.58 Total: 2.22 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.87 Total: -15.61 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.77 Total: -24.95 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.54 Total: -22.20 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.86 Total: 17.02 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.44 -6.21 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.632 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds