Wall clock time and date at job start Mon Mar 30 2020 01:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33092 * 120.00093 * 2 1 4 4 C 1.50699 * 120.00130 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.46859 * 95.00075 * 4 3 2 6 6 C 1.46935 * 120.00081 * 180.02562 * 3 2 1 7 7 O 1.21554 * 120.00131 * 359.97438 * 6 3 2 8 8 O 1.34811 * 120.00455 * 179.97438 * 6 3 2 9 9 C 1.35901 * 117.00604 * 175.00993 * 8 6 3 10 10 C 1.38836 * 120.02523 * 255.02060 * 9 8 6 11 11 C 1.38185 * 120.07792 * 179.73767 * 10 9 8 12 12 C 1.38150 * 120.12717 * 0.51243 * 11 10 9 13 13 C 1.38895 * 120.04486 * 359.76510 * 12 11 10 14 14 O 1.35750 * 120.04344 * 179.97438 * 13 12 11 15 15 C 1.34834 * 117.00136 * 185.61760 * 14 13 12 16 16 H 1.08004 * 119.99865 * 354.92682 * 15 14 13 17 17 C 1.38650 * 119.99795 * 174.93538 * 15 14 13 18 18 N 1.31561 * 119.99356 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00236 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47117 * 89.99821 * 19 17 15 21 21 H 1.48503 * 109.46687 * 209.99927 * 19 17 15 22 22 H 1.48502 * 109.47048 * 329.99726 * 19 17 15 23 23 C 1.38588 * 120.02088 * 75.29017 * 9 8 6 24 24 H 1.08995 * 109.47270 * 179.72396 * 1 2 3 25 25 H 1.09002 * 109.46855 * 299.72334 * 1 2 3 26 26 H 1.08995 * 109.46900 * 59.72094 * 1 2 3 27 27 H 1.08009 * 120.00007 * 180.28033 * 2 1 3 28 28 H 1.09004 * 109.47215 * 215.00118 * 4 3 2 29 29 H 1.08998 * 109.47076 * 335.00322 * 4 3 2 30 30 H 1.08997 * 109.47062 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.47243 * 300.00026 * 5 4 3 32 32 H 1.09003 * 109.47538 * 60.00247 * 5 4 3 33 33 H 1.08004 * 119.95779 * 359.97438 * 10 9 8 34 34 H 1.08007 * 119.93424 * 180.22859 * 11 10 9 35 35 H 1.08005 * 119.98121 * 179.73866 * 12 11 10 36 36 H 0.97008 * 119.99557 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.05623 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1526 0.0000 4 6 1.4190 2.4577 -0.0006 5 6 1.2724 2.9625 1.4363 6 6 3.6418 1.1526 -0.0006 7 8 4.2496 0.0999 -0.0006 8 8 4.3160 2.3200 -0.0011 9 6 5.6692 2.2513 0.1037 10 6 6.2906 2.5769 1.3018 11 6 7.6661 2.5021 1.4112 12 6 8.4279 2.1135 0.3262 13 6 7.8120 1.7921 -0.8766 14 8 8.5607 1.4108 -1.9428 15 6 7.9129 1.2257 -3.1108 16 1 6.8361 1.3007 -3.1489 17 6 8.6291 0.9388 -4.2628 18 7 7.9969 0.7577 -5.4023 19 14 10.4914 0.8094 -4.1970 20 1 10.8801 -0.5935 -3.9038 21 1 11.0625 1.2182 -5.5054 22 1 11.0121 1.7007 -3.1294 23 6 6.4302 1.8614 -0.9869 24 1 -0.3633 -1.0276 -0.0050 25 1 -0.3633 0.5095 0.8925 26 1 -0.3633 0.5181 -0.8874 27 1 2.0470 -0.9354 -0.0046 28 1 1.9666 3.1932 -0.5900 29 1 0.4309 2.3066 -0.4352 30 1 0.7271 3.9063 1.4359 31 1 0.7248 2.2271 2.0257 32 1 2.2605 3.1137 1.8710 33 1 5.6980 2.8853 2.1504 34 1 8.1468 2.7524 2.3454 35 1 9.5031 2.0599 0.4131 36 1 8.4980 0.5573 -6.2084 37 1 5.9488 1.6115 -1.9209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841343951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:17 Heat of formation + Delta-G solvation = -88.320078 kcal Electronic energy + Delta-G solvation = -20822.120650 eV Core-core repulsion = 17530.265279 eV Total energy + Delta-G solvation = -3291.855371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.37964 -40.76268 -38.98128 -37.51187 -37.20823 -34.53703 -32.29669 -31.50135 -30.91506 -29.02415 -27.40564 -25.16754 -24.16251 -23.37717 -22.63867 -20.18253 -19.99253 -19.51546 -18.24785 -17.89209 -17.44197 -17.02592 -16.21803 -16.00173 -15.85391 -15.56783 -15.11970 -14.80834 -14.67750 -14.40939 -14.20652 -14.00579 -13.57925 -13.29899 -13.21933 -13.07814 -12.95628 -12.84410 -12.57699 -12.21211 -12.08244 -11.99408 -11.82320 -11.64891 -11.47094 -10.98688 -10.21579 -9.87498 -9.28988 -8.57798 -6.33704 -0.06600 0.11387 0.45563 1.28009 1.33870 1.49350 1.69839 1.76166 2.23476 2.65258 2.88568 3.02391 3.51051 3.75904 3.94111 4.10313 4.11048 4.23281 4.26725 4.43984 4.49859 4.54226 4.66809 4.70660 4.77120 4.83218 5.04802 5.10083 5.15966 5.21036 5.30793 5.31706 5.36374 5.40085 5.43463 5.56478 5.60327 5.76107 6.02912 6.66525 6.74227 7.42025 8.54276 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.004649 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.952572 B = 6020.856694 C = 6944.132494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.039 4.039 3 C -0.187 4.187 4 C -0.080 4.080 5 C -0.143 4.143 6 C 0.488 3.512 7 O -0.537 6.537 8 O -0.289 6.289 9 C 0.106 3.894 10 C -0.183 4.183 11 C -0.047 4.047 12 C -0.181 4.181 13 C 0.133 3.867 14 O -0.233 6.233 15 C -0.408 4.408 16 H 0.067 0.933 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.979 3.021 20 H -0.265 1.265 21 H -0.263 1.263 22 H -0.256 1.256 23 C -0.245 4.245 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.157 0.843 34 H 0.184 0.816 35 H 0.149 0.851 36 H 0.288 0.712 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 3.681 15.444 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.188 4.188 4 C -0.117 4.117 5 C -0.200 4.200 6 C 0.338 3.662 7 O -0.427 6.427 8 O -0.204 6.204 9 C 0.065 3.935 10 C -0.202 4.202 11 C -0.065 4.065 12 C -0.200 4.200 13 C 0.084 3.916 14 O -0.140 6.140 15 C -0.484 4.484 16 H 0.085 0.915 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.187 1.187 22 H -0.180 1.180 23 C -0.265 4.265 24 H 0.105 0.895 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.130 0.870 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.175 0.825 34 H 0.201 0.799 35 H 0.166 0.834 36 H 0.097 0.903 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.925 3.294 15.176 20.205 hybrid contribution 0.701 -0.452 -1.044 1.336 sum -12.225 2.841 14.133 18.901 Atomic orbital electron populations 1.21156 0.87572 1.05038 1.04554 1.24097 0.99210 0.96091 0.86381 1.20865 0.85872 0.99754 1.12302 1.20584 1.00272 0.91442 0.99386 1.21703 1.01651 1.01990 0.94660 1.22695 0.90986 0.80819 0.71733 1.90876 1.71299 1.33434 1.47124 1.84603 1.18011 1.34459 1.83323 1.18528 0.80119 1.00808 0.94070 1.21173 0.96111 1.07412 0.95487 1.21168 0.91899 0.94893 0.98502 1.20801 1.01660 1.06903 0.90639 1.19476 0.89462 0.93559 0.89131 1.83517 1.36156 1.77617 1.16704 1.20624 0.92772 1.50908 0.84134 0.91525 1.25406 1.05784 0.94908 0.92648 1.69747 1.39096 1.47257 1.00049 0.85112 0.76575 0.79708 0.78638 1.18936 1.18726 1.17985 1.21254 0.94874 1.10679 0.99701 0.89529 0.88120 0.88660 0.87034 0.91940 0.87469 0.90398 0.91333 0.94158 0.82543 0.79862 0.83360 0.90279 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.85 71.24 0.63 -0.77 16 2 C -0.04 -0.83 9.84 24.53 0.24 -0.59 16 3 C -0.19 -4.93 5.25 -18.74 -0.10 -5.03 16 4 C -0.08 -1.55 5.47 29.85 0.16 -1.38 16 5 C -0.14 -2.27 9.89 71.98 0.71 -1.56 16 6 C 0.49 18.55 7.74 70.10 0.54 19.10 16 7 O -0.54 -24.66 15.69 19.66 0.31 -24.35 16 8 O -0.29 -11.33 9.38 -0.68 -0.01 -11.34 16 9 C 0.11 4.51 5.19 22.50 0.12 4.63 16 10 C -0.18 -6.15 9.99 22.40 0.22 -5.93 16 11 C -0.05 -1.43 10.03 22.24 0.22 -1.21 16 12 C -0.18 -6.97 9.99 22.41 0.22 -6.75 16 13 C 0.13 6.70 6.65 22.56 0.15 6.85 16 14 O -0.23 -13.29 8.58 -22.78 -0.20 -13.48 16 15 C -0.41 -25.65 9.95 67.92 0.68 -24.98 16 16 H 0.07 4.54 5.44 -2.91 -0.02 4.53 16 17 C 0.01 0.68 5.49 84.83 0.47 1.15 16 18 N -0.92 -57.13 13.96 21.61 0.30 -56.82 16 19 Si 0.98 46.37 28.62 68.60 1.96 48.33 16 20 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 23 C -0.25 -12.54 8.59 22.49 0.19 -12.35 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.10 0.76 7.83 -2.39 -0.02 0.74 16 26 H 0.10 0.87 7.40 -2.39 -0.02 0.85 16 27 H 0.11 2.78 7.49 -2.91 -0.02 2.76 16 28 H 0.06 1.44 7.83 -2.38 -0.02 1.42 16 29 H 0.11 1.41 6.31 -2.39 -0.02 1.39 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.87 7.87 -2.38 -0.02 0.85 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.16 4.06 8.06 -2.91 -0.02 4.03 16 34 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.15 4.93 8.06 -2.91 -0.02 4.91 16 36 H 0.29 16.16 8.31 -92.70 -0.77 15.39 16 37 H 0.10 5.64 5.64 -2.91 -0.02 5.62 16 Total: -1.00 -79.26 323.20 7.91 -71.34 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.08 Total: 15.14 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 4.46 Total: -28.82 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.30 Total: -56.82 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: 0.11 Total: -49.17 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.96 Total: 48.33 kcal Total: -79.26 7.91 -71.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841343951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.975 kcal (2) G-P(sol) polarization free energy of solvation -79.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds