Wall clock time and date at job start Mon Mar 30 2020 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48497 * 109.47390 * 270.00120 * 3 2 1 5 5 H 1.48502 * 109.47106 * 29.99678 * 3 2 1 6 6 H 1.48495 * 109.47235 * 149.99843 * 3 2 1 7 7 C 1.38654 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99901 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99296 * 179.97438 * 7 2 1 10 10 C 1.35755 * 116.99420 * 185.54605 * 9 7 2 11 11 C 1.38938 * 120.03971 * 185.88274 * 10 9 7 12 12 C 1.38106 * 120.04188 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.12522 * 0.04949 * 12 11 10 14 14 C 1.38786 * 120.07658 * 359.97438 * 13 12 11 15 15 O 1.35926 * 120.01757 * 180.02562 * 14 13 12 16 16 C 1.34261 * 117.00031 * 245.95958 * 15 14 13 17 17 O 1.20821 * 120.00488 * 355.08582 * 16 15 14 18 18 C 1.50706 * 119.99992 * 175.08242 * 16 15 14 19 19 C 1.53000 * 109.47314 * 179.97438 * 18 16 15 20 20 C 1.53779 * 113.61368 * 274.13961 * 19 18 16 21 21 C 1.53959 * 87.01661 * 220.04625 * 20 19 18 22 22 C 1.53784 * 113.61317 * 176.52721 * 19 18 16 23 23 C 1.38606 * 119.96055 * 359.97438 * 14 13 12 24 24 H 0.97004 * 119.99547 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.97561 * 359.97438 * 11 10 9 26 26 H 1.07994 * 119.94116 * 180.02562 * 12 11 10 27 27 H 1.07997 * 119.96114 * 179.97438 * 13 12 11 28 28 H 1.09001 * 109.46814 * 300.00323 * 18 16 15 29 29 H 1.08996 * 109.47121 * 59.99880 * 18 16 15 30 30 H 1.09002 * 112.84688 * 45.33962 * 19 18 16 31 31 H 1.08998 * 113.61706 * 334.56247 * 20 19 18 32 32 H 1.08997 * 113.61341 * 105.47033 * 20 19 18 33 33 H 1.09005 * 113.53742 * 270.81489 * 21 20 19 34 34 H 1.08996 * 113.66731 * 139.93331 * 21 20 19 35 35 H 1.08994 * 113.61520 * 254.52948 * 22 19 18 36 36 H 1.08997 * 113.61315 * 25.35650 * 22 19 18 37 37 H 1.08005 * 120.05987 * 179.72191 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4048 -0.1163 11 6 5.3552 -2.4929 -0.0015 12 6 5.9821 -3.7178 -0.1193 13 6 5.2373 -4.8588 -0.3527 14 6 3.8567 -4.7765 -0.4687 15 8 3.1255 -5.8992 -0.6976 16 6 2.4889 -5.9822 -1.8768 17 8 2.5081 -5.0465 -2.6409 18 6 1.7505 -7.2426 -2.2475 19 6 1.1184 -7.0753 -3.6307 20 6 -0.2652 -6.4049 -3.5987 21 6 -0.6888 -7.4112 -4.6842 22 6 0.4093 -8.3408 -4.1411 23 6 3.2240 -3.5490 -0.3500 24 1 -0.4850 0.8401 0.0004 25 1 5.9394 -1.6029 0.1800 26 1 7.0562 -3.7845 -0.0294 27 1 5.7303 -5.8152 -0.4448 28 1 2.4477 -8.0803 -2.2650 29 1 0.9692 -7.4355 -1.5123 30 1 1.8007 -6.6341 -4.3573 31 1 -0.7918 -6.5351 -2.6533 32 1 -0.2570 -5.3700 -3.9408 33 1 -0.5017 -7.0610 -5.6993 34 1 -1.6975 -7.8016 -4.5493 35 1 0.9611 -8.8664 -4.9203 36 1 0.0687 -9.0019 -3.3442 37 1 2.1502 -3.4825 -0.4445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841345582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:18 Heat of formation + Delta-G solvation = -62.463362 kcal Electronic energy + Delta-G solvation = -20831.200751 eV Core-core repulsion = 17540.466611 eV Total energy + Delta-G solvation = -3290.734140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97016 -39.22745 -38.61304 -36.93703 -35.77310 -32.40681 -31.11426 -29.58860 -29.11119 -25.69827 -25.40789 -24.53328 -22.43933 -21.48511 -20.43528 -19.47062 -18.11779 -18.00359 -16.98873 -16.20335 -16.11373 -15.31322 -15.29856 -14.80894 -14.47507 -14.01503 -13.82782 -13.59462 -13.26752 -13.03083 -12.54283 -12.47543 -12.26069 -11.97801 -11.74465 -11.59544 -11.28360 -11.11088 -10.83318 -10.77179 -10.49637 -10.40313 -10.32789 -10.26734 -10.13290 -9.53172 -8.90227 -8.20319 -7.49449 -6.44154 -4.11291 1.71792 2.11668 2.43296 3.08847 3.20793 3.25500 3.38830 4.21716 4.35927 4.46952 4.49709 4.59243 4.76010 4.77548 4.97813 5.05815 5.22421 5.33448 5.40452 5.51506 5.58828 5.64400 5.72776 5.77389 5.80112 5.88127 6.06966 6.07809 6.14058 6.28939 6.40169 6.41926 6.86777 6.96796 7.05947 7.08428 7.45600 7.72404 7.97080 8.18973 8.90169 9.49129 10.63336 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.005126 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.650186 B = 5460.922559 C = 6944.213861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.390 4.390 8 H 0.104 0.896 9 O -0.210 6.210 10 C 0.170 3.830 11 C -0.190 4.190 12 C -0.066 4.066 13 C -0.206 4.206 14 C 0.120 3.880 15 O -0.299 6.299 16 C 0.450 3.550 17 O -0.478 6.478 18 C -0.100 4.100 19 C -0.102 4.102 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.219 4.219 24 H 0.280 0.720 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -15.057 -4.996 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.465 4.465 8 H 0.122 0.878 9 O -0.115 6.115 10 C 0.117 3.883 11 C -0.209 4.209 12 C -0.085 4.085 13 C -0.225 4.225 14 C 0.079 3.921 15 O -0.214 6.214 16 C 0.293 3.707 17 O -0.362 6.362 18 C -0.137 4.137 19 C -0.120 4.120 20 C -0.176 4.176 21 C -0.179 4.179 22 C -0.171 4.171 23 C -0.239 4.239 24 H 0.090 0.910 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.135 0.865 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.396 -14.359 -5.206 15.646 hybrid contribution 0.069 0.752 0.028 0.755 sum 3.465 -13.607 -5.178 14.966 Atomic orbital electron populations 1.69655 1.05601 1.28574 1.47480 1.24479 0.95051 0.98878 0.95473 0.86165 0.80346 0.81266 0.79045 1.19807 1.20658 1.18246 1.20750 0.76736 0.96674 1.52370 0.87817 1.83605 1.22763 1.25266 1.79852 1.18877 0.91467 0.85227 0.92754 1.20308 0.91852 0.98321 1.10413 1.20476 0.98716 0.91131 0.98129 1.20483 0.91143 0.98939 1.11913 1.18281 0.89551 0.84130 1.00143 1.84527 1.58754 1.40902 1.37251 1.24070 0.77359 0.90226 0.79067 1.90739 1.56846 1.38726 1.49845 1.21436 1.00219 0.93313 0.98778 1.22471 0.96695 0.97779 0.95092 1.23028 0.95512 0.99658 0.99369 1.22817 0.98605 0.97489 0.98993 1.22957 0.97607 0.95969 1.00616 1.21339 1.01732 0.91468 1.09314 0.90969 0.85921 0.85817 0.86498 0.87644 0.87594 0.88066 0.90010 0.90757 0.90201 0.91415 0.91350 0.89888 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.96 55.48 0.77 -24.90 16 2 C 0.06 1.86 5.49 -17.51 -0.10 1.76 16 3 Si 0.91 21.92 28.62 -169.99 -4.86 17.05 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.39 -11.33 9.90 30.89 0.31 -11.02 16 8 H 0.10 3.14 5.53 -52.49 -0.29 2.84 16 9 O -0.21 -5.69 8.59 0.03 0.00 -5.69 16 10 C 0.17 4.08 6.64 -39.13 -0.26 3.82 16 11 C -0.19 -3.80 9.99 -39.37 -0.39 -4.19 16 12 C -0.07 -1.13 10.03 -39.63 -0.40 -1.53 16 13 C -0.21 -3.67 9.99 -39.38 -0.39 -4.06 16 14 C 0.12 2.45 5.46 -39.24 -0.21 2.24 16 15 O -0.30 -5.43 10.05 -23.62 -0.24 -5.67 16 16 C 0.45 7.59 7.77 36.01 0.28 7.87 16 17 O -0.48 -9.87 14.86 -18.74 -0.28 -10.15 16 18 C -0.10 -1.12 5.64 -27.88 -0.16 -1.28 16 19 C -0.10 -1.14 3.11 -89.81 -0.28 -1.42 16 20 C -0.14 -1.63 7.65 -25.83 -0.20 -1.83 16 21 C -0.14 -1.32 8.09 -25.82 -0.21 -1.53 16 22 C -0.13 -1.13 7.65 -25.91 -0.20 -1.33 16 23 C -0.22 -5.16 7.99 -39.25 -0.31 -5.47 16 24 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.11 1.03 7.87 -51.93 -0.41 0.62 16 30 H 0.10 1.27 7.73 -51.93 -0.40 0.87 16 31 H 0.08 0.93 7.92 -51.93 -0.41 0.51 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.14 3.51 5.72 -52.48 -0.30 3.21 16 LS Contribution 318.84 15.07 4.80 4.80 Total: -1.00 -32.07 318.84 -7.07 -39.15 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.75 Total: 3.39 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.52 Total: -17.98 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.77 Total: -24.90 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.52 Total: -21.51 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.86 Total: 17.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.07 -7.07 -39.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.318 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds