Wall clock time and date at job start Mon Mar 30 2020 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48497 * 109.47390 * 270.00120 * 3 2 1 5 5 H 1.48502 * 109.47106 * 29.99678 * 3 2 1 6 6 H 1.48495 * 109.47235 * 149.99843 * 3 2 1 7 7 C 1.38654 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99901 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99296 * 179.97438 * 7 2 1 10 10 C 1.35755 * 116.99420 * 185.54605 * 9 7 2 11 11 C 1.38938 * 120.03971 * 185.88274 * 10 9 7 12 12 C 1.38106 * 120.04188 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.12522 * 0.04949 * 12 11 10 14 14 C 1.38786 * 120.07658 * 359.97438 * 13 12 11 15 15 O 1.35926 * 120.01757 * 180.02562 * 14 13 12 16 16 C 1.34261 * 117.00031 * 245.95958 * 15 14 13 17 17 O 1.20821 * 120.00488 * 355.08582 * 16 15 14 18 18 C 1.50706 * 119.99992 * 175.08242 * 16 15 14 19 19 C 1.53000 * 109.47314 * 179.97438 * 18 16 15 20 20 C 1.53779 * 113.61368 * 274.13961 * 19 18 16 21 21 C 1.53959 * 87.01661 * 220.04625 * 20 19 18 22 22 C 1.53784 * 113.61317 * 176.52721 * 19 18 16 23 23 C 1.38606 * 119.96055 * 359.97438 * 14 13 12 24 24 H 0.97004 * 119.99547 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.97561 * 359.97438 * 11 10 9 26 26 H 1.07994 * 119.94116 * 180.02562 * 12 11 10 27 27 H 1.07997 * 119.96114 * 179.97438 * 13 12 11 28 28 H 1.09001 * 109.46814 * 300.00323 * 18 16 15 29 29 H 1.08996 * 109.47121 * 59.99880 * 18 16 15 30 30 H 1.09002 * 112.84688 * 45.33962 * 19 18 16 31 31 H 1.08998 * 113.61706 * 334.56247 * 20 19 18 32 32 H 1.08997 * 113.61341 * 105.47033 * 20 19 18 33 33 H 1.09005 * 113.53742 * 270.81489 * 21 20 19 34 34 H 1.08996 * 113.66731 * 139.93331 * 21 20 19 35 35 H 1.08994 * 113.61520 * 254.52948 * 22 19 18 36 36 H 1.08997 * 113.61315 * 25.35650 * 22 19 18 37 37 H 1.08005 * 120.05987 * 179.72191 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3571 -1.2007 0.0000 10 6 3.9734 -2.4048 -0.1163 11 6 5.3552 -2.4929 -0.0015 12 6 5.9821 -3.7178 -0.1193 13 6 5.2373 -4.8588 -0.3527 14 6 3.8567 -4.7765 -0.4687 15 8 3.1255 -5.8992 -0.6976 16 6 2.4889 -5.9822 -1.8768 17 8 2.5081 -5.0465 -2.6409 18 6 1.7505 -7.2426 -2.2475 19 6 1.1184 -7.0753 -3.6307 20 6 -0.2652 -6.4049 -3.5987 21 6 -0.6888 -7.4112 -4.6842 22 6 0.4093 -8.3408 -4.1411 23 6 3.2240 -3.5490 -0.3500 24 1 -0.4850 0.8401 0.0004 25 1 5.9394 -1.6029 0.1800 26 1 7.0562 -3.7845 -0.0294 27 1 5.7303 -5.8152 -0.4448 28 1 2.4477 -8.0803 -2.2650 29 1 0.9692 -7.4355 -1.5123 30 1 1.8007 -6.6341 -4.3573 31 1 -0.7918 -6.5351 -2.6533 32 1 -0.2570 -5.3700 -3.9408 33 1 -0.5017 -7.0610 -5.6993 34 1 -1.6975 -7.8016 -4.5493 35 1 0.9611 -8.8664 -4.9203 36 1 0.0687 -9.0019 -3.3442 37 1 2.1502 -3.4825 -0.4445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841345582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:18 Heat of formation + Delta-G solvation = -81.010633 kcal Electronic energy + Delta-G solvation = -20832.005021 eV Core-core repulsion = 17540.466611 eV Total energy + Delta-G solvation = -3291.538410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.42761 -40.77859 -39.80098 -38.48439 -37.37569 -34.53186 -32.27067 -31.15987 -30.72465 -27.43442 -26.51866 -25.74826 -23.79976 -23.14980 -21.87678 -20.34138 -20.05604 -19.67652 -18.43512 -17.73402 -17.53079 -17.00352 -16.45858 -16.20672 -15.86119 -15.63642 -15.57731 -15.06213 -14.65226 -14.59334 -14.22081 -13.98334 -13.35020 -13.29629 -13.02956 -12.89544 -12.80989 -12.56945 -12.47009 -12.13989 -11.99607 -11.81392 -11.60822 -11.46819 -11.23802 -11.13293 -10.97845 -9.81713 -9.25643 -8.57797 -6.32838 0.11931 0.48596 1.07824 1.26985 1.32590 1.48684 1.73863 2.23064 2.65513 2.97018 2.98620 3.46540 3.63801 3.71033 3.85878 3.95783 3.98110 4.14222 4.26600 4.34098 4.42203 4.48948 4.57713 4.77903 4.81576 4.84720 4.89221 4.94090 5.07683 5.13771 5.23451 5.31014 5.32518 5.41303 5.51341 5.58807 5.62049 5.77961 6.05658 6.73920 6.74809 7.43592 8.54378 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015899 B = 0.005126 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.650186 B = 5460.922559 C = 6944.213861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.978 3.022 4 H -0.267 1.267 5 H -0.262 1.262 6 H -0.256 1.256 7 C -0.405 4.405 8 H 0.067 0.933 9 O -0.235 6.235 10 C 0.131 3.869 11 C -0.185 4.185 12 C -0.048 4.048 13 C -0.182 4.182 14 C 0.106 3.894 15 O -0.296 6.296 16 C 0.445 3.555 17 O -0.526 6.526 18 C -0.090 4.090 19 C -0.108 4.108 20 C -0.156 4.156 21 C -0.137 4.137 22 C -0.112 4.112 23 C -0.246 4.246 24 H 0.287 0.713 25 H 0.146 0.854 26 H 0.183 0.817 27 H 0.162 0.838 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.599 -17.431 -5.021 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.481 4.481 8 H 0.084 0.916 9 O -0.142 6.142 10 C 0.081 3.919 11 C -0.204 4.204 12 C -0.065 4.065 13 C -0.201 4.201 14 C 0.065 3.935 15 O -0.212 6.212 16 C 0.291 3.709 17 O -0.412 6.412 18 C -0.127 4.127 19 C -0.127 4.127 20 C -0.194 4.194 21 C -0.174 4.174 22 C -0.149 4.149 23 C -0.266 4.266 24 H 0.097 0.903 25 H 0.163 0.837 26 H 0.201 0.799 27 H 0.180 0.820 28 H 0.164 0.836 29 H 0.145 0.855 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.475 -16.792 -5.226 18.740 hybrid contribution -0.731 1.197 0.007 1.403 sum 5.744 -15.595 -5.220 17.419 Atomic orbital electron populations 1.69748 1.07127 1.29873 1.49427 1.25400 0.95989 1.02489 0.94976 0.85131 0.79012 0.76637 0.79376 1.19193 1.18630 1.17946 1.20592 0.78098 0.95844 1.53533 0.91551 1.83532 1.21125 1.26841 1.82717 1.19524 0.93373 0.84489 0.94516 1.20782 0.89891 1.00840 1.08914 1.21167 1.01413 0.89161 0.94775 1.21123 0.89630 1.01352 1.07954 1.18572 0.91143 0.83628 1.00174 1.84558 1.58870 1.39589 1.38170 1.25366 0.76345 0.91412 0.77817 1.90729 1.58512 1.40853 1.51134 1.21701 1.00831 0.91185 0.98960 1.22497 0.95727 0.99597 0.94834 1.23143 0.97247 0.98356 1.00657 1.22815 0.99981 0.96663 0.97938 1.22902 0.96041 0.94647 1.01309 1.21243 1.00014 0.93612 1.11682 0.90348 0.83665 0.79930 0.82032 0.83600 0.85549 0.90080 0.89761 0.94565 0.90340 0.89999 0.89647 0.87652 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.30 13.96 21.61 0.30 -57.00 16 2 C 0.01 0.61 5.49 84.83 0.47 1.08 16 3 Si 0.98 46.66 28.62 68.60 1.96 48.62 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.40 -25.40 9.90 67.92 0.67 -24.73 16 8 H 0.07 4.51 5.53 -2.91 -0.02 4.50 16 9 O -0.23 -13.40 8.59 -22.81 -0.20 -13.60 16 10 C 0.13 6.51 6.64 22.56 0.15 6.66 16 11 C -0.19 -7.05 9.99 22.41 0.22 -6.83 16 12 C -0.05 -1.40 10.03 22.24 0.22 -1.18 16 13 C -0.18 -5.78 9.99 22.40 0.22 -5.56 16 14 C 0.11 4.32 5.46 22.49 0.12 4.44 16 15 O -0.30 -10.67 10.05 4.54 0.05 -10.62 16 16 C 0.45 15.19 7.77 71.24 0.55 15.74 16 17 O -0.53 -23.02 14.86 21.98 0.33 -22.69 16 18 C -0.09 -1.87 5.64 29.85 0.17 -1.70 16 19 C -0.11 -2.34 3.11 -10.27 -0.03 -2.37 16 20 C -0.16 -3.88 7.65 31.18 0.24 -3.64 16 21 C -0.14 -2.40 8.09 31.18 0.25 -2.15 16 22 C -0.11 -1.56 7.65 31.12 0.24 -1.32 16 23 C -0.25 -12.31 7.99 22.48 0.18 -12.13 16 24 H 0.29 16.20 8.31 -92.70 -0.77 15.43 16 25 H 0.15 4.83 8.06 -2.91 -0.02 4.81 16 26 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 27 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.13 2.18 7.87 -2.39 -0.02 2.16 16 30 H 0.08 2.09 7.73 -2.39 -0.02 2.07 16 31 H 0.08 1.99 7.92 -2.39 -0.02 1.97 16 32 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.11 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.10 5.49 5.72 -2.91 -0.02 5.47 16 Total: -1.00 -78.77 318.84 7.20 -71.57 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.07 Total: 17.41 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 3.68 Total: -33.69 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.30 Total: -57.00 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: 0.18 Total: -46.91 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.96 Total: 48.62 kcal Total: -78.77 7.20 -71.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.438 kcal (2) G-P(sol) polarization free energy of solvation -78.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds