Wall clock time and date at job start Mon Mar 30 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50698 * 120.00484 * 2 1 4 4 C 1.33094 * 119.99835 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00027 * 172.45798 * 4 2 1 6 6 C 1.46935 * 120.00260 * 352.46681 * 4 2 1 7 7 O 1.21548 * 119.99501 * 353.89698 * 6 4 2 8 8 O 1.34809 * 120.00238 * 173.90416 * 6 4 2 9 9 C 1.35906 * 117.00057 * 175.11128 * 8 6 4 10 10 C 1.38838 * 120.01903 * 257.75384 * 9 8 6 11 11 C 1.38183 * 120.08019 * 179.97438 * 10 9 8 12 12 C 1.38159 * 120.12325 * 359.78842 * 11 10 9 13 13 C 1.38894 * 120.04424 * 0.46202 * 12 11 10 14 14 O 1.35753 * 120.04498 * 179.79237 * 13 12 11 15 15 C 1.34828 * 117.00406 * 174.12075 * 14 13 12 16 16 H 1.08000 * 119.99938 * 5.08115 * 15 14 13 17 17 C 1.38645 * 119.99909 * 185.08134 * 15 14 13 18 18 N 1.31559 * 119.99792 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00356 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46882 * 89.99604 * 19 17 15 21 21 H 1.48502 * 109.47158 * 209.99804 * 19 17 15 22 22 H 1.48498 * 109.46658 * 329.99757 * 19 17 15 23 23 C 1.38581 * 120.02297 * 77.73191 * 9 8 6 24 24 H 1.08997 * 109.46931 * 263.46133 * 1 2 3 25 25 H 1.08996 * 109.47068 * 23.45744 * 1 2 3 26 26 H 1.08995 * 109.46907 * 143.45871 * 1 2 3 27 27 H 1.09002 * 109.47042 * 273.10936 * 3 2 1 28 28 H 1.09004 * 109.46950 * 33.10592 * 3 2 1 29 29 H 1.08995 * 109.47721 * 153.10575 * 3 2 1 30 30 H 1.08997 * 109.47422 * 185.37037 * 5 4 2 31 31 H 1.09006 * 109.47560 * 305.37397 * 5 4 2 32 32 H 1.09000 * 109.47122 * 65.37441 * 5 4 2 33 33 H 1.08000 * 119.96252 * 359.97433 * 10 9 8 34 34 H 1.07998 * 119.94027 * 180.02562 * 11 10 9 35 35 H 1.08003 * 119.97913 * 180.23141 * 12 11 10 36 36 H 0.96999 * 120.00398 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.06253 * 0.04064 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1724 -1.1526 0.0005 5 6 3.6696 -1.1584 -0.1708 6 6 1.4473 -2.4196 0.1679 7 8 0.2575 -2.4105 0.4165 8 8 2.1015 -3.5919 0.0460 9 6 1.3964 -4.7227 0.3129 10 6 1.5668 -5.3776 1.5252 11 6 0.8501 -6.5271 1.7981 12 6 -0.0412 -7.0258 0.8677 13 6 -0.2118 -6.3777 -0.3489 14 8 -1.0844 -6.8702 -1.2648 15 6 -1.2932 -6.1291 -2.3716 16 1 -0.7160 -5.2315 -2.5373 17 6 -2.2488 -6.5195 -3.2972 18 7 -2.4529 -5.7962 -4.3769 19 14 -3.2477 -8.0717 -3.0104 20 1 -4.4791 -7.7348 -2.2517 21 1 -3.6198 -8.6696 -4.3178 22 1 -2.4383 -9.0447 -2.2336 23 6 0.5066 -5.2225 -0.6246 24 1 -0.3633 -0.1170 1.0210 25 1 -0.3633 0.9427 -0.4091 26 1 -0.3633 -0.8256 -0.6118 27 1 2.3940 1.6475 -1.0262 28 1 1.6968 2.0501 0.5613 29 1 3.2359 1.1615 0.4648 30 1 4.0235 -2.1870 -0.2398 31 1 3.9332 -0.6215 -1.0821 32 1 4.1352 -0.6708 0.6857 33 1 2.2603 -4.9882 2.2558 34 1 0.9841 -7.0345 2.7420 35 1 -0.6028 -7.9224 1.0850 36 1 -3.1217 -6.0690 -5.0243 37 1 0.3730 -4.7146 -1.5683 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841345672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:34 Heat of formation + Delta-G solvation = -65.367093 kcal Electronic energy + Delta-G solvation = -20951.155508 eV Core-core repulsion = 17660.295453 eV Total energy + Delta-G solvation = -3290.860055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86276 -39.04376 -37.66962 -36.10299 -35.60653 -32.40271 -30.90839 -29.65237 -29.10498 -28.10109 -25.44448 -25.12667 -23.41094 -21.64644 -20.91331 -18.63463 -18.08526 -17.87699 -16.39574 -15.97167 -15.70972 -15.29772 -14.74374 -14.53587 -14.11822 -14.01967 -13.67717 -13.63685 -13.24191 -12.90021 -12.63030 -12.53995 -12.35526 -12.24808 -12.10506 -11.95769 -11.51513 -11.47558 -11.31766 -11.09464 -10.78923 -10.35335 -10.25561 -9.89945 -9.51515 -8.94081 -8.90010 -8.22304 -7.49303 -6.43563 -4.11195 1.14018 1.72651 2.12392 3.02477 3.17859 3.21154 3.26296 3.39078 4.21941 4.38765 4.68627 4.70775 4.79030 4.98205 5.07047 5.09960 5.27920 5.48005 5.52481 5.54722 5.60334 5.68293 5.73281 5.81302 5.87713 5.89474 6.08642 6.10605 6.24202 6.39573 6.39839 6.61567 6.89348 6.96735 7.04616 7.09440 7.46217 7.73695 7.97749 8.23007 8.90621 9.49459 10.63898 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018889 B = 0.004971 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.976434 B = 5631.500900 C = 6642.355626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.032 4.032 3 C -0.125 4.125 4 C -0.177 4.177 5 C -0.108 4.108 6 C 0.492 3.508 7 O -0.482 6.482 8 O -0.293 6.293 9 C 0.123 3.877 10 C -0.204 4.204 11 C -0.067 4.067 12 C -0.187 4.187 13 C 0.170 3.830 14 O -0.211 6.211 15 C -0.391 4.391 16 H 0.105 0.895 17 C 0.065 3.935 18 N -0.876 5.876 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.218 4.218 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.280 0.720 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.943 9.838 9.516 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.033 4.033 3 C -0.181 4.181 4 C -0.178 4.178 5 C -0.165 4.165 6 C 0.339 3.661 7 O -0.370 6.370 8 O -0.209 6.209 9 C 0.082 3.918 10 C -0.223 4.223 11 C -0.085 4.085 12 C -0.206 4.206 13 C 0.117 3.883 14 O -0.115 6.115 15 C -0.467 4.467 16 H 0.123 0.877 17 C -0.139 4.139 18 N -0.514 5.514 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.237 4.237 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.300 9.641 9.338 16.329 hybrid contribution -0.514 -0.543 -0.178 0.769 sum 8.786 9.098 9.160 15.616 Atomic orbital electron populations 1.21203 0.90553 1.02938 1.03825 1.22514 0.96884 0.93941 0.89939 1.21008 1.00227 0.93783 1.03074 1.20473 0.96903 0.89173 1.11285 1.20704 0.90176 1.03919 1.01660 1.21583 0.85815 0.84291 0.74421 1.90889 1.15640 1.87342 1.43117 1.84564 1.42904 1.13417 1.80022 1.18215 0.94335 0.85343 0.93927 1.20606 1.05715 0.99989 0.96034 1.20483 0.94836 0.95051 0.98146 1.20319 1.04241 1.03170 0.92915 1.18844 0.89491 0.91018 0.88950 1.83587 1.54320 1.45436 1.28202 1.20763 1.22163 1.08260 0.95478 0.87749 1.24469 0.96285 0.98831 0.94267 1.69649 1.33509 1.38313 1.09906 0.86168 0.80373 0.82442 0.77849 1.19782 1.20683 1.18265 1.21332 1.00328 1.00287 1.01763 0.90037 0.92118 0.89175 0.90067 0.90712 0.90714 0.90506 0.91244 0.91333 0.86618 0.85857 0.85901 0.90967 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.45 36.01 0.30 -1.38 16 2 C -0.03 -0.38 6.10 -101.14 -0.62 -1.00 16 3 C -0.12 -0.96 9.50 36.00 0.34 -0.62 16 4 C -0.18 -2.42 5.98 -102.89 -0.62 -3.03 16 5 C -0.11 -1.13 8.78 36.00 0.32 -0.81 16 6 C 0.49 8.92 7.60 34.25 0.26 9.18 16 7 O -0.48 -10.05 12.86 -19.30 -0.25 -10.30 16 8 O -0.29 -5.58 9.01 -25.00 -0.23 -5.81 16 9 C 0.12 2.55 5.12 -39.23 -0.20 2.35 16 10 C -0.20 -3.73 9.99 -39.38 -0.39 -4.12 16 11 C -0.07 -1.16 10.03 -39.63 -0.40 -1.56 16 12 C -0.19 -3.76 9.99 -39.37 -0.39 -4.16 16 13 C 0.17 4.08 6.65 -39.13 -0.26 3.82 16 14 O -0.21 -5.69 8.58 0.04 0.00 -5.69 16 15 C -0.39 -11.36 9.95 30.88 0.31 -11.05 16 16 H 0.11 3.15 5.44 -52.49 -0.29 2.87 16 17 C 0.07 1.86 5.49 -17.52 -0.10 1.76 16 18 N -0.88 -25.70 13.96 55.48 0.77 -24.93 16 19 Si 0.91 21.86 28.62 -169.99 -4.86 17.00 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.22 -5.14 8.73 -39.25 -0.34 -5.49 16 24 H 0.08 1.08 7.99 -51.93 -0.41 0.67 16 25 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.09 1.48 6.25 -51.93 -0.32 1.15 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.49 6.58 -51.93 -0.34 0.15 16 30 H 0.08 0.88 7.18 -51.93 -0.37 0.51 16 31 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 36 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.14 3.49 5.64 -52.49 -0.30 3.20 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -31.99 318.15 -6.06 -38.05 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.51 Total: 2.97 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.79 Total: -16.10 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.77 Total: -24.93 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.47 Total: -21.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.99 -6.06 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.313 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds