Wall clock time and date at job start Mon Mar 30 2020 01:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50698 * 120.00484 * 2 1 4 4 C 1.33094 * 119.99835 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00027 * 172.45798 * 4 2 1 6 6 C 1.46935 * 120.00260 * 352.46681 * 4 2 1 7 7 O 1.21548 * 119.99501 * 353.89698 * 6 4 2 8 8 O 1.34809 * 120.00238 * 173.90416 * 6 4 2 9 9 C 1.35906 * 117.00057 * 175.11128 * 8 6 4 10 10 C 1.38838 * 120.01903 * 257.75384 * 9 8 6 11 11 C 1.38183 * 120.08019 * 179.97438 * 10 9 8 12 12 C 1.38159 * 120.12325 * 359.78842 * 11 10 9 13 13 C 1.38894 * 120.04424 * 0.46202 * 12 11 10 14 14 O 1.35753 * 120.04498 * 179.79237 * 13 12 11 15 15 C 1.34828 * 117.00406 * 174.12075 * 14 13 12 16 16 H 1.08000 * 119.99938 * 5.08115 * 15 14 13 17 17 C 1.38645 * 119.99909 * 185.08134 * 15 14 13 18 18 N 1.31559 * 119.99792 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00356 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46882 * 89.99604 * 19 17 15 21 21 H 1.48502 * 109.47158 * 209.99804 * 19 17 15 22 22 H 1.48498 * 109.46658 * 329.99757 * 19 17 15 23 23 C 1.38581 * 120.02297 * 77.73191 * 9 8 6 24 24 H 1.08997 * 109.46931 * 263.46133 * 1 2 3 25 25 H 1.08996 * 109.47068 * 23.45744 * 1 2 3 26 26 H 1.08995 * 109.46907 * 143.45871 * 1 2 3 27 27 H 1.09002 * 109.47042 * 273.10936 * 3 2 1 28 28 H 1.09004 * 109.46950 * 33.10592 * 3 2 1 29 29 H 1.08995 * 109.47721 * 153.10575 * 3 2 1 30 30 H 1.08997 * 109.47422 * 185.37037 * 5 4 2 31 31 H 1.09006 * 109.47560 * 305.37397 * 5 4 2 32 32 H 1.09000 * 109.47122 * 65.37441 * 5 4 2 33 33 H 1.08000 * 119.96252 * 359.97433 * 10 9 8 34 34 H 1.07998 * 119.94027 * 180.02562 * 11 10 9 35 35 H 1.08003 * 119.97913 * 180.23141 * 12 11 10 36 36 H 0.96999 * 120.00398 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.06253 * 0.04064 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1724 -1.1526 0.0005 5 6 3.6696 -1.1584 -0.1708 6 6 1.4473 -2.4196 0.1679 7 8 0.2575 -2.4105 0.4165 8 8 2.1015 -3.5919 0.0460 9 6 1.3964 -4.7227 0.3129 10 6 1.5668 -5.3776 1.5252 11 6 0.8501 -6.5271 1.7981 12 6 -0.0412 -7.0258 0.8677 13 6 -0.2118 -6.3777 -0.3489 14 8 -1.0844 -6.8702 -1.2648 15 6 -1.2932 -6.1291 -2.3716 16 1 -0.7160 -5.2315 -2.5373 17 6 -2.2488 -6.5195 -3.2972 18 7 -2.4529 -5.7962 -4.3769 19 14 -3.2477 -8.0717 -3.0104 20 1 -4.4791 -7.7348 -2.2517 21 1 -3.6198 -8.6696 -4.3178 22 1 -2.4383 -9.0447 -2.2336 23 6 0.5066 -5.2225 -0.6246 24 1 -0.3633 -0.1170 1.0210 25 1 -0.3633 0.9427 -0.4091 26 1 -0.3633 -0.8256 -0.6118 27 1 2.3940 1.6475 -1.0262 28 1 1.6968 2.0501 0.5613 29 1 3.2359 1.1615 0.4648 30 1 4.0235 -2.1870 -0.2398 31 1 3.9332 -0.6215 -1.0821 32 1 4.1352 -0.6708 0.6857 33 1 2.2603 -4.9882 2.2558 34 1 0.9841 -7.0345 2.7420 35 1 -0.6028 -7.9224 1.0850 36 1 -3.1217 -6.0690 -5.0243 37 1 0.3730 -4.7146 -1.5683 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841345672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:33 Heat of formation + Delta-G solvation = -84.173308 kcal Electronic energy + Delta-G solvation = -20951.971006 eV Core-core repulsion = 17660.295453 eV Total energy + Delta-G solvation = -3291.675554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.36035 -40.77842 -39.14522 -37.60577 -36.95739 -34.53395 -32.03591 -31.20953 -30.74429 -28.94631 -27.42413 -26.29680 -24.77109 -23.35005 -22.47397 -20.10307 -19.91546 -19.53317 -18.04328 -17.49297 -17.02024 -16.94479 -16.27617 -15.88694 -15.77323 -15.54476 -15.09365 -15.01585 -14.80061 -14.35552 -14.18530 -13.77058 -13.52984 -13.30439 -13.17907 -13.10551 -12.94413 -12.87928 -12.73606 -12.58652 -12.32574 -12.10774 -11.95112 -11.60118 -11.24687 -10.97599 -9.91899 -9.86113 -9.28137 -8.57438 -6.33224 -0.02300 0.12386 0.46447 1.27852 1.33453 1.49565 1.73415 1.78642 2.23634 2.66209 2.90572 3.02391 3.57067 3.74898 3.94934 3.99144 4.11942 4.24156 4.27601 4.46104 4.57184 4.58232 4.70228 4.75551 4.77889 4.87020 4.90128 4.96542 5.11150 5.17211 5.22026 5.31299 5.34844 5.40517 5.49336 5.60905 5.65313 5.78035 6.04476 6.73967 6.74868 7.42706 8.54686 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018889 B = 0.004971 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.976434 B = 5631.500900 C = 6642.355626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.011 4.011 3 C -0.121 4.121 4 C -0.205 4.205 5 C -0.101 4.101 6 C 0.481 3.519 7 O -0.523 6.523 8 O -0.295 6.295 9 C 0.109 3.891 10 C -0.184 4.184 11 C -0.047 4.047 12 C -0.181 4.181 13 C 0.133 3.867 14 O -0.233 6.233 15 C -0.407 4.407 16 H 0.067 0.933 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.263 1.263 22 H -0.257 1.257 23 C -0.244 4.244 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.183 0.817 35 H 0.148 0.852 36 H 0.287 0.713 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.509 10.103 12.492 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.012 4.012 3 C -0.177 4.177 4 C -0.206 4.206 5 C -0.157 4.157 6 C 0.331 3.669 7 O -0.413 6.413 8 O -0.211 6.211 9 C 0.068 3.932 10 C -0.203 4.203 11 C -0.065 4.065 12 C -0.200 4.200 13 C 0.084 3.916 14 O -0.140 6.140 15 C -0.483 4.483 16 H 0.085 0.915 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.799 3.201 20 H -0.189 1.189 21 H -0.187 1.187 22 H -0.180 1.180 23 C -0.264 4.264 24 H 0.095 0.905 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.173 0.827 34 H 0.200 0.800 35 H 0.166 0.834 36 H 0.097 0.903 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.916 9.925 12.341 19.234 hybrid contribution -0.831 -0.434 -0.881 1.287 sum 10.084 9.492 11.460 17.975 Atomic orbital electron populations 1.21180 0.92126 1.02705 1.02862 1.22947 0.96161 0.95484 0.86621 1.21151 1.00708 0.91204 1.04626 1.20721 0.98635 0.87188 1.14028 1.20733 0.87596 1.03622 1.03749 1.22627 0.85799 0.85083 0.73394 1.90871 1.17373 1.87686 1.45406 1.84581 1.42685 1.13491 1.80321 1.18494 0.93953 0.86327 0.94442 1.21197 1.04915 0.99297 0.94897 1.21157 0.92150 0.93943 0.99255 1.20795 1.04482 1.03430 0.91323 1.19466 0.89719 0.92153 0.90284 1.83520 1.56434 1.45722 1.28335 1.20613 1.22663 1.07923 0.97138 0.91535 1.25400 0.97218 1.02428 0.93723 1.69742 1.34881 1.40482 1.11088 0.85118 0.78526 0.77903 0.78519 1.18902 1.18733 1.18048 1.21244 1.02671 1.01073 1.01422 0.90507 0.89126 0.93480 0.88286 0.88863 0.88744 0.92080 0.89495 0.88518 0.82671 0.79971 0.83399 0.90304 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 8.45 71.24 0.60 -2.92 16 2 C -0.01 -0.25 6.10 -17.60 -0.11 -0.36 16 3 C -0.12 -1.40 9.50 71.24 0.68 -0.73 16 4 C -0.20 -5.51 5.98 -18.74 -0.11 -5.62 16 5 C -0.10 -1.90 8.78 71.24 0.63 -1.28 16 6 C 0.48 18.25 7.60 70.10 0.53 18.78 16 7 O -0.52 -23.34 12.86 19.68 0.25 -23.08 16 8 O -0.30 -11.64 9.01 -0.72 -0.01 -11.64 16 9 C 0.11 4.64 5.12 22.50 0.12 4.76 16 10 C -0.18 -6.22 9.99 22.40 0.22 -6.00 16 11 C -0.05 -1.45 10.03 22.24 0.22 -1.23 16 12 C -0.18 -6.98 9.99 22.41 0.22 -6.76 16 13 C 0.13 6.68 6.65 22.56 0.15 6.83 16 14 O -0.23 -13.26 8.58 -22.76 -0.20 -13.46 16 15 C -0.41 -25.56 9.95 67.92 0.68 -24.89 16 16 H 0.07 4.54 5.44 -2.91 -0.02 4.52 16 17 C 0.01 0.66 5.49 84.83 0.47 1.13 16 18 N -0.92 -57.20 13.96 21.61 0.30 -56.90 16 19 Si 0.98 46.40 28.62 68.60 1.96 48.36 16 20 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 23 C -0.24 -12.44 8.73 22.49 0.20 -12.24 16 24 H 0.08 2.10 7.99 -2.39 -0.02 2.08 16 25 H 0.09 1.80 8.08 -2.39 -0.02 1.78 16 26 H 0.05 1.68 6.25 -2.39 -0.01 1.67 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 0.80 6.58 -2.39 -0.02 0.78 16 30 H 0.06 1.34 7.18 -2.39 -0.02 1.33 16 31 H 0.09 1.32 8.07 -2.38 -0.02 1.30 16 32 H 0.10 1.26 7.45 -2.39 -0.02 1.24 16 33 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.15 4.92 8.06 -2.91 -0.02 4.90 16 36 H 0.29 16.17 8.31 -92.71 -0.77 15.40 16 37 H 0.10 5.63 5.64 -2.91 -0.02 5.61 16 Total: -1.00 -78.60 318.15 7.89 -70.71 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 1.09 Total: 16.54 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 4.49 Total: -30.52 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.30 Total: -56.90 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: 0.05 Total: -48.18 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.96 Total: 48.36 kcal Total: -78.60 7.89 -70.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.464 kcal (2) G-P(sol) polarization free energy of solvation -78.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds